Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006290

Physical Location & Seq

Genomic Coordinates Forward (+)

40406877 .. 40408067

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0329100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGTCAGACTATCTTCCAAATGAAGTTCTAATAGATATACTTGTGAGACTACCTGTGAAGTCACTGCTGAGATTCAGGTGTGTTTCGAGGATATGGAACTCTCTCATTTCTAGCCCTGCATTCATCAACACCCATCTCAACCAAGCTCTTCTTCAACAAACCAACCAGGAAATGCTTCTCTTTCGATACTACTATTCCATAGATTATGTAATGGAAGATGACCATGGAATCCACATGACAGTCAATGACAGGCGTGAAGAACGCTTCTCTTTGCACATAGATGATGAATCCTTTCCCCACAATCCCTACTTGAAACTTGATTTCCCATATAGATGTGGGGGCTACTATAAACATTACTTCCAAATAGTGGCCTCAGTGAATGGGATAGTCTGCCTGGCCGACCCAAATCGCTGTATTCTGTGGAACCCTTCGGTGAACAGAGTCATGGAGCTCCCGTTTGCATTTCAATATCCAGATCGTTCTGTCATGCATCATCTTGGATTTGGCTGTGACCGAGTCACGAATGACTACAAGCTGGTAAGACTAGTCTATTTTGGAAGAAAAGACCATTATGTGGTTCCACCTGTGGTTGAGATTTTCACTCTTAGCACAAATTCATGGCGACAACTTGCAGCTCCTGGTCCTATGTATGTCACTGTACAGCATTCATCATCATCACAGTCCTTTGCATCTGGTGCATTCCACTGGGTTGCGAATGCTCCACCAGAAGAGGGCGCTTTCTGCAATCTGATTCTAGCATTTGATATGGCTAATGAGGTTTTCCATGAACTTCCTCTGCCCAGCTGTTTAGCAGCAAAATCAAACTTGAATATGACTCTTGCGGTGTTGAACGGATTACTTTCTCTGGTCCCTCGGAATAATGGTCCGGTCGATGACGAGTCTTACTCAGACTCAGTGTGGATCATGAAAGAATACGGCATGGCAGAATCTTGGACTAAGCTATTCAGTATTGATATTCAGGGAGGAGCAATAAGGAGGGTGCTATCGTTCACAAAGAATGGTGAAGTTATATTACTTAACAATTCAAATGAACTGGTCTCATATGAATCCAATACCCAACAAACTAGGGATCTTGAATACAGTGTAGGCAAGAGATTCTCAAAAAAAGTGTATTCTCTGGATACTTACATGGAGAGCCTTGTTCTGTTGAATGTAGCTGATGTCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04212 map04212

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

396

Amino Acids

45.38

Weight (kDa)

5.74

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	4 - 40	2.6e-09	F-box-like
F-box	PF00646	5 - 41	3.4e-10	F-box domain
FBA_3	PF08268	87 - 368	8e-20	F-box associated beta propeller domain
FBA_1	PF07734	121 - 378	7.3e-21	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52640
fragaria_vesca	FvH4_6g30140 FvH4_6g30140 FvH4_6g30140 FvH4_6g30140 FvH4_6g30140
malus_domestica	MD17G1208000.v1.1
prunus_persica	Prupe.3G082300_v2.0.a1 Prupe.3G082300_v2.0.a1
pyrus_communis	pycom17g21050
rosa_chinensis	RchiOBHm_Chr2g0136191 RchiOBHm_Chr2g0136301 RchiOBHm_Chr2g0136351
rosa_laevigata	RLG00000019513 RLG00000019521
rosa_multiflora	Rmu_sc0001998.1_g000030 Rmu_sc0002070.1_g000029
rosa_roxburghii	Rroxscaffold_2G00108380
rosa_rugosa	Rorug02G0328900 Rorug02G0329100 Rorug02G0329200
rosa_samantha	Rh2AG380400 Rh2AG380700 Rh2BG387500 Rh2CG366500 Rh2DG403700
rosa_wichuraiana	Rw2G031130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1189
AccB7I	CCANNNNNTGG	2 cut(s)	367, 574
AciI	CCGC	1 cut(s)	842
AclWI	GGATC	2 cut(s)	929, 1098
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	613
AfaI	GTAC	1 cut(s)	660
AfiI	CCNNNNNNNGG	3 cut(s)	367, 574, 731
AgsI	TTSAA	8 cut(s)	155, 313, 467, 829, 850, 1047, 1097, 1171
AhlI	ACTAGT	1 cut(s)	544
AjnI	CCWGG	3 cut(s)	165, 393, 637
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
AluBI	AGCT	7 cut(s)	146, 451, 535, 635, 804, 961, 1178
AluI	AGCT	7 cut(s)	146, 451, 535, 635, 804, 961, 1178
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	2 cut(s)	40, 1063
AlwI	GGATC	2 cut(s)	929, 1098
AlwNI	CAGNNNCTG	1 cut(s)	638
AoxI	GGCC	2 cut(s)	369, 396
ApeKI	GCWGC	2 cut(s)	632, 812
ApoI	RAATTY	1 cut(s)	613
Asp700I	GAANNNNTTC	2 cut(s)	174, 291
AspLEI	GCGC	1 cut(s)	737
AspS9I	GGNCC	3 cut(s)	641, 868, 884
AsuHPI	GGTGA	2 cut(s)	445, 1034
AvaII	GGWCC	3 cut(s)	641, 868, 884
BanII	GRGCYC	1 cut(s)	453
BarI	GAAGNNNNNNTAC	2 cut(s)	1017, 1049
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	644, 824
BccI	CCATC	1 cut(s)	141
BceAI	ACGGC	1 cut(s)	952
BciT130I	CCWGG	3 cut(s)	167, 395, 639
BciVI	GTATCC	1 cut(s)	1135
BcoDI	GTCTC	2 cut(s)	40, 1063
BcuI	ACTAGT	1 cut(s)	544
BfaI	CTAG	4 cut(s)	111, 545, 755, 1086
BfoI	RGCGCY	1 cut(s)	738
BfuI	GTATCC	1 cut(s)	1135
BisI	GCNGC	2 cut(s)	633, 813
BlsI	GCNGC	2 cut(s)	634, 814
Bme1390I	CCNGG	3 cut(s)	167, 395, 639
Bme18I	GGWCC	3 cut(s)	641, 868, 884
BmgT120I	GGNCC	3 cut(s)	641, 868, 884
BmiI	GGNNCC	3 cut(s)	425, 579, 870
BmrFI	CCNGG	3 cut(s)	167, 395, 639
BmrI	ACTGGG	1 cut(s)	715
BmsI	GCATC	2 cut(s)	499, 698
BmuI	ACTGGG	1 cut(s)	715
BplI	GAGNNNNNCTC	2 cut(s)	890, 922
BsaI	GGTCTC	1 cut(s)	1063
BsaJI	CCNNGG	2 cut(s)	223, 872
BsaWI	WCCGGW	1 cut(s)	886
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	3 cut(s)	367, 574, 731
Bse1I	ACTGG	2 cut(s)	710, 1059
BseBI	CCWGG	3 cut(s)	167, 395, 639
BseDI	CCNNGG	2 cut(s)	223, 872
BseLI	CCNNNNNNNGG	3 cut(s)	367, 574, 731
BseMII	CTCAG	4 cut(s)	59, 387, 921, 927
BseNI	ACTGG	2 cut(s)	710, 1059
BseRI	GAGGAG	1 cut(s)	999
BseXI	GCAGC	2 cut(s)	644, 824
BseYI	CCCAGC	1 cut(s)	800
Bsh1285I	CGRYCG	1 cut(s)	891
BshFI	GGCC	2 cut(s)	371, 398
BsiEI	CGRYCG	1 cut(s)	891
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	887
BslFI	GGGAC	1 cut(s)	854
BslI	CCNNNNNNNGG	3 cut(s)	367, 574, 731
BsmAI	GTCTC	2 cut(s)	40, 1063
BsmFI	GGGAC	1 cut(s)	854
BsmI	GAATGC	4 cut(s)	119, 664, 698, 721
BsnI	GGCC	2 cut(s)	371, 398
Bso31I	GGTCTC	1 cut(s)	1063
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp1407I	TGTACA	1 cut(s)	658
Bsp143I	GATC	3 cut(s)	475, 921, 1090
Bsp19I	CCATGG	1 cut(s)	223
BspACI	CCGC	1 cut(s)	842
BspANI	GGCC	2 cut(s)	371, 398
BspCNI	CTCAG	4 cut(s)	60, 386, 920, 926
BspHI	TCATGA	1 cut(s)	924
BspLI	GGNNCC	3 cut(s)	425, 579, 870
BspPI	GGATC	2 cut(s)	929, 1098
BspQI	GCTCTTC	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	1063
BsrGI	TGTACA	1 cut(s)	658
BsrI	ACTGG	2 cut(s)	710, 1059
BssECI	CCNNGG	2 cut(s)	223, 872
BssMI	GATC	3 cut(s)	475, 921, 1090
BssT1I	CCWWGG	1 cut(s)	223
Bst2UI	CCWGG	3 cut(s)	167, 395, 639
Bst4CI	ACNGT	4 cut(s)	241, 658, 681, 1103
Bst6I	CTCTTC	2 cut(s)	153, 723
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstAUI	TGTACA	1 cut(s)	658
BstDEI	CTNAG	6 cut(s)	68, 373, 605, 907, 913, 957
BstDSI	CCRYGG	1 cut(s)	223
BstH2I	RGCGCY	1 cut(s)	738
BstHHI	GCGC	1 cut(s)	737
BstKTI	GATC	3 cut(s)	478, 924, 1093
BstMAI	GTCTC	2 cut(s)	40, 1063
BstMBI	GATC	3 cut(s)	475, 921, 1090
BstMCI	CGRYCG	1 cut(s)	891
BstMWI	GCNNNNNNNGC	2 cut(s)	695, 741
BstNI	CCWGG	3 cut(s)	167, 395, 639
BstSCI	CCNGG	3 cut(s)	165, 393, 637
BstV1I	GCAGC	2 cut(s)	644, 824
BstX2I	RGATCY	1 cut(s)	1090
BstYI	RGATCY	1 cut(s)	1090
BsuI	GTATCC	1 cut(s)	1135
BsuRI	GGCC	2 cut(s)	371, 398
BtgI	CCRYGG	1 cut(s)	223
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	6 cut(s)	62, 381, 654, 703, 921, 1108
CaiI	CAGNNNCTG	1 cut(s)	638
CciI	TCATGA	1 cut(s)	924
CfoI	GCGC	1 cut(s)	737
Cfr13I	GGNCC	3 cut(s)	641, 868, 884
Csp6I	GTAC	1 cut(s)	659
CviAII	CATG	9 cut(s)	224, 235, 445, 487, 618, 785, 925, 940, 1150
CviQI	GTAC	1 cut(s)	659
DdeI	CTNAG	6 cut(s)	68, 373, 605, 907, 913, 957
DpnI	GATC	3 cut(s)	477, 923, 1092
DpnII	GATC	3 cut(s)	475, 921, 1090
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	153, 723
EarI	CTCTTC	2 cut(s)	153, 723
Ecl136II	GAGCTC	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	1063
Eco47I	GGWCC	3 cut(s)	641, 868, 884
Eco53kI	GAGCTC	1 cut(s)	451
EcoICRI	GAGCTC	1 cut(s)	451
EcoRII	CCWGG	3 cut(s)	165, 393, 637
EcoT14I	CCWWGG	1 cut(s)	223
EcoT22I	ATGCAT	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	9 cut(s)	227, 238, 448, 490, 621, 788, 928, 943, 1153
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FaqI	GGGAC	1 cut(s)	854
FatI	CATG	9 cut(s)	223, 234, 444, 486, 617, 784, 924, 939, 1149
FauNDI	CATATG	1 cut(s)	1063
Fnu4HI	GCNGC	2 cut(s)	633, 813
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	2 cut(s)	633, 813
FspBI	CTAG	4 cut(s)	111, 545, 755, 1086
GlaI	GCGC	1 cut(s)	736
GluI	GCNGC	2 cut(s)	633, 813
GsaI	CCCAGC	1 cut(s)	804
HaeII	RGCGCY	1 cut(s)	738
HaeIII	GGCC	2 cut(s)	371, 398
HapII	CCGG	1 cut(s)	887
HhaI	GCGC	1 cut(s)	737
Hin1II	CATG	9 cut(s)	227, 238, 448, 490, 621, 788, 928, 943, 1153
Hin6I	GCGC	1 cut(s)	735
HinP1I	GCGC	1 cut(s)	735
HpaII	CCGG	1 cut(s)	887
HphI	GGTGA	2 cut(s)	445, 1034
Hpy166II	GTNNAC	2 cut(s)	436, 1011
Hpy188I	TCNGA	4 cut(s)	7, 750, 876, 910
Hpy188III	TCNNGA	5 cut(s)	473, 520, 925, 1094, 1139
Hpy8I	GTNNAC	2 cut(s)	436, 1011
HpyAV	CCTTC	1 cut(s)	438
HpyCH4III	ACNGT	4 cut(s)	241, 658, 681, 1103
HpyCH4V	TGCA	8 cut(s)	119, 274, 461, 490, 632, 689, 698, 744
HpyF10VI	GCNNNNNNNGC	2 cut(s)	695, 741
HpyF3I	CTNAG	6 cut(s)	68, 373, 605, 907, 913, 957
Hsp92II	CATG	9 cut(s)	227, 238, 448, 490, 621, 788, 928, 943, 1153
HspAI	GCGC	1 cut(s)	735
Kzo9I	GATC	3 cut(s)	475, 921, 1090
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	5 cut(s)	448, 456, 640, 724, 986
Lsp1109I	GCAGC	2 cut(s)	644, 824
LweI	GCATC	2 cut(s)	499, 698
MaeI	CTAG	4 cut(s)	111, 545, 755, 1086
MaeIII	GTNAC	4 cut(s)	60, 509, 517, 652
MalI	GATC	3 cut(s)	477, 923, 1092
MboI	GATC	3 cut(s)	475, 921, 1090
MboII	GAAGA	7 cut(s)	5, 140, 143, 227, 269, 570, 740
MflI	RGATCY	1 cut(s)	1090
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	2 cut(s)	613, 1042
MlyI	GAGTC	5 cut(s)	450, 525, 829, 905, 908
MnlI	CCTC	8 cut(s)	81, 382, 724, 769, 804, 882, 977, 990
Mph1103I	ATGCAT	1 cut(s)	492
MroXI	GAANNNNTTC	2 cut(s)	174, 291
MseI	TTAA	1 cut(s)	1038
MslI	CAYNNNNRTG	2 cut(s)	279, 331
MspA1I	CMGCKG	1 cut(s)	804
MspI	CCGG	1 cut(s)	887
MspR9I	CCNGG	3 cut(s)	167, 395, 639
Mva1269I	GAATGC	4 cut(s)	119, 664, 698, 721
MvaI	CCWGG	3 cut(s)	167, 395, 639
MwoI	GCNNNNNNNGC	2 cut(s)	695, 741
NcoI	CCATGG	1 cut(s)	223
NdeI	CATATG	1 cut(s)	1063
NdeII	GATC	3 cut(s)	475, 921, 1090
NlaIII	CATG	9 cut(s)	227, 238, 448, 490, 621, 788, 928, 943, 1153
NlaIV	GGNNCC	3 cut(s)	425, 579, 870
NmuCI	GTSAC	4 cut(s)	60, 509, 517, 652
NsiI	ATGCAT	1 cut(s)	492
PagI	TCATGA	1 cut(s)	924
PciSI	GCTCTTC	1 cut(s)	153
PctI	GAATGC	4 cut(s)	119, 664, 698, 721
PdmI	GAANNNNTTC	2 cut(s)	174, 291
PfeI	GAWTC	7 cut(s)	72, 228, 287, 751, 947, 1067, 1116
PflFI	GACNNNGTC	1 cut(s)	515
PflMI	CCANNNNNTGG	2 cut(s)	367, 574
PkrI	GCNGC	2 cut(s)	634, 814
PleI	GAGTC	5 cut(s)	449, 524, 829, 905, 907
PpsI	GAGTC	5 cut(s)	449, 524, 829, 905, 907
PsiI	TTATAA	1 cut(s)	1189
Psp124BI	GAGCTC	1 cut(s)	453
Psp6I	CCWGG	3 cut(s)	165, 393, 637
PspFI	CCCAGC	1 cut(s)	800
PspGI	CCWGG	3 cut(s)	165, 393, 637
PspN4I	GGNNCC	3 cut(s)	425, 579, 870
PspPI	GGNCC	3 cut(s)	641, 868, 884
PstNI	CAGNNNCTG	1 cut(s)	638
PsuI	RGATCY	1 cut(s)	1090
PsyI	GACNNNGTC	1 cut(s)	515
PvuII	CAGCTG	1 cut(s)	804
RsaI	GTAC	1 cut(s)	660
RsaNI	GTAC	1 cut(s)	659
RseI	CAYNNNNRTG	2 cut(s)	279, 331
SacI	GAGCTC	1 cut(s)	453
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	1038
SatI	GCNGC	2 cut(s)	633, 813
Sau3AI	GATC	3 cut(s)	475, 921, 1090
Sau96I	GGNCC	3 cut(s)	641, 868, 884
SchI	GAGTC	5 cut(s)	450, 525, 829, 905, 908
ScrFI	CCNGG	3 cut(s)	167, 395, 639
SduI	GDGCHC	1 cut(s)	453
SfaNI	GCATC	2 cut(s)	499, 698
SinI	GGWCC	3 cut(s)	641, 868, 884
SmiMI	CAYNNNNRTG	2 cut(s)	279, 331
SpeI	ACTAGT	1 cut(s)	544
Sse9I	AATT	2 cut(s)	613, 1042
SsiI	CCGC	1 cut(s)	842
SspMI	CTAG	4 cut(s)	111, 545, 755, 1086
SstI	GAGCTC	1 cut(s)	453
StyD4I	CCNGG	3 cut(s)	165, 393, 637
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	4 cut(s)	241, 658, 681, 1103
TaqI	TCGA	3 cut(s)	86, 184, 891
TaqII	GACCGA	1 cut(s)	528
TasI	AATT	2 cut(s)	613, 1042
TatI	WGTACW	1 cut(s)	658
TfiI	GAWTC	7 cut(s)	72, 228, 287, 751, 947, 1067, 1116
Tru1I	TTAA	1 cut(s)	1038
Tru9I	TTAA	1 cut(s)	1038
TscAI	CASTG	6 cut(s)	69, 381, 661, 710, 921, 1108
TseFI	GTSAC	4 cut(s)	60, 509, 517, 652
TseI	GCWGC	2 cut(s)	632, 812
Tsp45I	GTSAC	4 cut(s)	60, 509, 517, 652
TspDTI	ATGAA	9 cut(s)	36, 112, 300, 606, 657, 801, 941, 1065, 1080
TspGWI	ACGGA	1 cut(s)	867
TspRI	CASTG	6 cut(s)	69, 381, 661, 710, 921, 1108
Tth111I	GACNNNGTC	1 cut(s)	515
Van91I	CCANNNNNTGG	2 cut(s)	367, 574
VpaK11BI	GGWCC	3 cut(s)	641, 868, 884
XapI	RAATTY	1 cut(s)	613
XmnI	GAANNNNTTC	2 cut(s)	174, 291
XspI	CTAG	4 cut(s)	111, 545, 755, 1086
Zsp2I	ATGCAT	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.