FvH4_6g31461

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012833
Physical Location & Seq
Reverse (-)
24585391 .. 24586286
896 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31461.t1

Sequence Viewer

Length: 711 bp
ATGAGCAGAGCAGAAATGGTCCTAAAAGAAACAATGCACAAAAGCAAGGAGTTCTATGAGAAAACTATTCAAAACCTCAAAAGCTTCATCTGTGGAGGATACAAGAAACTACCCAAATCCCTTTCCTTGAATCCTTGCATTTGTGGGAGTGACCTGAAATATCACCCAACAGATGAGTTCTACACTGAATATTATGATGAGTGGGAGTCTACTATAGATAAGGTGAAGAAGAGAGACAGTACATCAAAAGAAACAATCAAGGATGAGGATCCATGTACTGAAAGCTTCATCATGTTCCCAAAGCAAAGTCCTAAGAAGAACAAACAAGAAGGGGGATTGTTAAGAGACAAGAAGCCTAGTGGAAAGTCGACTCGTGATCTTGGAAAGGGAAAAGATCAGTCATCATTCCAAAGCATGCATGGTAATACAGGGAGCAATGTTTTGGCAAAAAGGATGAAGGAGTTTGAAATGGTGGATACAGCTGATGTGGAACAGGTGTTGGATGTTGAAGAGGCACTTCACTACTACTCTCGCCTCAAAAGTCCGGTGTACCTTGACATTGTTGACAAGTTTTTCTTGGATATGTACTCAGATTTCTCAGTCCCACCAGCACCATCGATCGGCATCAACAATTCAAAGCAGAGACTTGGCTCCCGGAGATTTGGCTCCCAGAGACAGGGGTCCCGGAGACTTGGCTCCATTAGGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEAD_2 Helicase_C_2

Protein Analysis

237

Amino Acids

27.09

Weight (kDa)

9.05

Isoelectric Point (pI)

57.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012833)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16070
fragaria_vesca FvH4_6g31461
malus_domestica MD09G1210900.v1.1 MD17G1193700.v1.1
prunus_persica Prupe.3G069200_v2.0.a1
pyrus_communis pycom09g12850
rosa_chinensis RchiOBHm_Chr2g0138311
rosa_laevigata RLG00000019733
rosa_multiflora Rmu_sc0002475.1_g000007
rosa_roxburghii Rroxscaffold_2G00106340
rosa_rugosa Rorug02G0351100 Rorug02G0351200
rosa_samantha Rh2AG398800 Rh2BG408800 Rh2BG410200 Rh2CG385600 Rh2DG419100
rosa_wichuraiana Rw2G032500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 209, 368
AclWI GGATC 2 cut(s) 263, 276
AfaI GTAC 4 cut(s) 241, 277, 551, 587
AfiI CCNNNNNNNGG 2 cut(s) 620, 676
AgsI TTSAA 5 cut(s) 71, 130, 467, 509, 636
AluBI AGCT 3 cut(s) 84, 285, 482
AluI AGCT 3 cut(s) 84, 285, 482
Alw26I GTCTC 5 cut(s) 228, 339, 637, 667, 682
AlwI GGATC 2 cut(s) 263, 276
AspS9I GGNCC 2 cut(s) 19, 681
AsuC2I CCSGG 2 cut(s) 655, 685
AsuHPI GGTGA 2 cut(s) 155, 235
AvaII GGWCC 2 cut(s) 19, 681
BamHI GGATCC 1 cut(s) 268
BauI CACGAG 1 cut(s) 372
BccI CCATC 1 cut(s) 622
BciVI GTATCC 2 cut(s) 92, 469
BcnI CCSGG 2 cut(s) 655, 685
BcoDI GTCTC 5 cut(s) 228, 339, 637, 667, 682
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 213
BfuI GTATCC 2 cut(s) 92, 469
Bme1390I CCNGG 2 cut(s) 655, 685
Bme18I GGWCC 2 cut(s) 19, 681
BmgT120I GGNCC 2 cut(s) 19, 681
BmiI GGNNCC 6 cut(s) 270, 652, 667, 682, 683, 697
BmrFI CCNGG 2 cut(s) 655, 685
BmsI GCATC 1 cut(s) 633
BoxI GACNNNNGTC 1 cut(s) 679
BpuMI CCSGG 2 cut(s) 655, 685
Bsa29I ATCGAT 1 cut(s) 617
BsaBI GATNNNNATC 2 cut(s) 267, 623
BsaWI WCCGGW 1 cut(s) 544
Bsc4I CCNNNNNNNGG 2 cut(s) 620, 676
Bse3DI GCAATG 1 cut(s) 442
Bse8I GATNNNNATC 2 cut(s) 267, 623
BseCI ATCGAT 1 cut(s) 617
BseGI GGATG 3 cut(s) 268, 459, 508
BseJI GATNNNNATC 2 cut(s) 267, 623
BseLI CCNNNNNNNGG 2 cut(s) 620, 676
BseMI GCAATG 1 cut(s) 442
BseMII CTCAG 2 cut(s) 603, 612
Bsh1285I CGRYCG 1 cut(s) 621
BshVI ATCGAT 1 cut(s) 617
BsiEI CGRYCG 1 cut(s) 621
BsiSI CCGG 3 cut(s) 545, 655, 685
BslFI GGGAC 2 cut(s) 587, 667
BslI CCNNNNNNNGG 2 cut(s) 620, 676
BsmAI GTCTC 5 cut(s) 228, 339, 637, 667, 682
BsmFI GGGAC 2 cut(s) 587, 667
Bsp143I GATC 4 cut(s) 268, 376, 394, 618
BspCNI CTCAG 2 cut(s) 602, 611
BspDI ATCGAT 1 cut(s) 617
BspLI GGNNCC 6 cut(s) 270, 652, 667, 682, 683, 697
BspPI GGATC 2 cut(s) 263, 276
BsrDI GCAATG 1 cut(s) 442
BssMI GATC 4 cut(s) 268, 376, 394, 618
BssSI CACGAG 1 cut(s) 372
Bst2BI CACGAG 1 cut(s) 372
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 2 cut(s) 224, 504
BstC8I GCNNGC 1 cut(s) 416
BstDEI CTNAG 3 cut(s) 312, 589, 598
BstF5I GGATG 3 cut(s) 268, 459, 508
BstKTI GATC 4 cut(s) 271, 379, 397, 621
BstMAI GTCTC 5 cut(s) 228, 339, 637, 667, 682
BstMBI GATC 4 cut(s) 268, 376, 394, 618
BstMCI CGRYCG 1 cut(s) 621
BstNSI RCATGY 1 cut(s) 418
BstPAI GACNNNNGTC 1 cut(s) 679
BstSCI CCNGG 2 cut(s) 653, 683
BstSFI CTRYAG 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
Bsu15I ATCGAT 1 cut(s) 617
BsuI GTATCC 2 cut(s) 92, 469
BsuTUI ATCGAT 1 cut(s) 617
BtsCI GGATG 3 cut(s) 268, 459, 508
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 416
Cfr13I GGNCC 2 cut(s) 19, 681
ClaI ATCGAT 1 cut(s) 617
Csp6I GTAC 4 cut(s) 240, 276, 550, 586
CviAII CATG 4 cut(s) 273, 292, 415, 419
CviJI RGCY 7 cut(s) 84, 285, 355, 482, 651, 666, 696
CviKI_1 RGCY 7 cut(s) 84, 285, 355, 482, 651, 666, 696
CviQI GTAC 4 cut(s) 240, 276, 550, 586
DdeI CTNAG 3 cut(s) 312, 589, 598
DpnI GATC 4 cut(s) 270, 378, 396, 620
DpnII GATC 4 cut(s) 268, 376, 394, 618
Eam1104I CTCTTC 2 cut(s) 224, 504
EarI CTCTTC 2 cut(s) 224, 504
Eco47I GGWCC 2 cut(s) 19, 681
EcoO109I RGGNCCY 1 cut(s) 681
EcoT22I ATGCAT 1 cut(s) 420
FaeI CATG 4 cut(s) 276, 295, 418, 422
FaiI YATR 8 cut(s) 57, 195, 215, 274, 293, 416, 420, 584
FalI AAGNNNNNCTT 4 cut(s) 501, 533, 560, 592
FaqI GGGAC 2 cut(s) 587, 667
FatI CATG 4 cut(s) 272, 291, 414, 418
FblI GTMKAC 2 cut(s) 209, 368
FokI GGATG 3 cut(s) 275, 466, 515
FspBI CTAG 1 cut(s) 357
HapII CCGG 3 cut(s) 545, 655, 685
Hin1II CATG 4 cut(s) 276, 295, 418, 422
HincII GTYRAC 2 cut(s) 369, 565
HindII GTYRAC 2 cut(s) 369, 565
HindIII AAGCTT 2 cut(s) 82, 283
HinfI GANTC 3 cut(s) 130, 206, 370
HpaII CCGG 3 cut(s) 545, 655, 685
HphI GGTGA 2 cut(s) 155, 235
Hpy166II GTNNAC 4 cut(s) 210, 369, 550, 565
Hpy188I TCNGA 1 cut(s) 592
Hpy188III TCNNGA 1 cut(s) 374
Hpy8I GTNNAC 4 cut(s) 210, 369, 550, 565
HpyAV CCTTC 2 cut(s) 323, 451
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 3 cut(s) 37, 138, 418
HpyF3I CTNAG 3 cut(s) 312, 589, 598
Hsp92II CATG 4 cut(s) 276, 295, 418, 422
KflI GGGWCCC 1 cut(s) 681
Kzo9I GATC 4 cut(s) 268, 376, 394, 618
LmnI GCTCC 4 cut(s) 432, 656, 671, 701
LpnPI CCDG 9 cut(s) 167, 414, 479, 558, 621, 662, 668, 683, 698
LweI GCATC 1 cut(s) 633
MaeI CTAG 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 149
MalI GATC 4 cut(s) 270, 378, 396, 620
MboI GATC 4 cut(s) 268, 376, 394, 618
MboII GAAGA 4 cut(s) 238, 241, 328, 521
MflI RGATCY 1 cut(s) 268
MluCI AATT 1 cut(s) 631
MlyI GAGTC 2 cut(s) 215, 364
MmeI TCCRAC 1 cut(s) 480
MnlI CCTC 5 cut(s) 86, 89, 259, 505, 545
Mph1103I ATGCAT 1 cut(s) 420
MseI TTAA 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 3 cut(s) 545, 655, 685
MspR9I CCNGG 2 cut(s) 655, 685
NciI CCSGG 2 cut(s) 655, 685
NdeII GATC 4 cut(s) 268, 376, 394, 618
NlaIII CATG 4 cut(s) 276, 295, 418, 422
NlaIV GGNNCC 6 cut(s) 270, 652, 667, 682, 683, 697
NmuCI GTSAC 1 cut(s) 149
NsiI ATGCAT 1 cut(s) 420
NspI RCATGY 1 cut(s) 418
PaeI GCATGC 1 cut(s) 418
PfeI GAWTC 1 cut(s) 130
PfoI TCCNGGA 2 cut(s) 653, 683
Ple19I CGATCG 1 cut(s) 621
PleI GAGTC 2 cut(s) 214, 364
PpsI GAGTC 2 cut(s) 214, 364
PpuMI RGGWCCY 1 cut(s) 681
PshAI GACNNNNGTC 1 cut(s) 679
Psp5II RGGWCCY 1 cut(s) 681
PspN4I GGNNCC 6 cut(s) 270, 652, 667, 682, 683, 697
PspPI GGNCC 2 cut(s) 19, 681
PspPPI RGGWCCY 1 cut(s) 681
PsuI RGATCY 1 cut(s) 268
PvuI CGATCG 1 cut(s) 621
PvuII CAGCTG 1 cut(s) 482
RsaI GTAC 4 cut(s) 241, 277, 551, 587
RsaNI GTAC 4 cut(s) 240, 276, 550, 586
SalI GTCGAC 1 cut(s) 367
SaqAI TTAA 1 cut(s) 341
Sau3AI GATC 4 cut(s) 268, 376, 394, 618
Sau96I GGNCC 2 cut(s) 19, 681
SchI GAGTC 2 cut(s) 215, 364
ScrFI CCNGG 2 cut(s) 655, 685
SetI ASST 9 cut(s) 78, 86, 156, 225, 287, 484, 498, 555, 707
SfaNI GCATC 1 cut(s) 633
SfcI CTRYAG 1 cut(s) 213
SinI GGWCC 2 cut(s) 19, 681
SphI GCATGC 1 cut(s) 418
Sse9I AATT 1 cut(s) 631
SspI AATATT 1 cut(s) 191
SspMI CTAG 1 cut(s) 357
StyD4I CCNGG 2 cut(s) 653, 683
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 2 cut(s) 368, 617
TasI AATT 1 cut(s) 631
TatI WGTACW 3 cut(s) 239, 275, 585
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 3 cut(s) 76, 277, 470
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 2 cut(s) 19, 681
XceI RCATGY 1 cut(s) 418
XcmI CCANNNNNNNNNTGG 1 cut(s) 416
XmiI GTMKAC 2 cut(s) 209, 368
XspI CTAG 1 cut(s) 357
Zsp2I ATGCAT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.