ATP-dependent RNA helicase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G16070 |
| fragaria_vesca | FvH4_6g31461 |
| malus_domestica | MD09G1210900.v1.1 MD17G1193700.v1.1 |
| prunus_persica | Prupe.3G069200_v2.0.a1 |
| pyrus_communis | pycom09g12850 |
| rosa_chinensis | RchiOBHm_Chr2g0138311 |
| rosa_laevigata | RLG00000019733 |
| rosa_multiflora | Rmu_sc0002475.1_g000007 |
| rosa_roxburghii | Rroxscaffold_2G00106340 |
| rosa_rugosa | Rorug02G0351100 Rorug02G0351200 |
| rosa_samantha | Rh2AG398800 Rh2BG408800 Rh2BG410200 Rh2CG385600 Rh2DG419100 |
| rosa_wichuraiana | Rw2G032500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 34 |
| AfaI | GTAC | 1 cut(s) | 114 |
| AgsI | TTSAA | 2 cut(s) | 97, 230 |
| AluBI | AGCT | 3 cut(s) | 100, 170, 175 |
| AluI | AGCT | 3 cut(s) | 100, 170, 175 |
| Alw26I | GTCTC | 2 cut(s) | 58, 271 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 157 |
| AspS9I | GGNCC | 1 cut(s) | 234 |
| AsuHPI | GGTGA | 1 cut(s) | 176 |
| AvaII | GGWCC | 1 cut(s) | 234 |
| BauI | CACGAG | 1 cut(s) | 60 |
| BceAI | ACGGC | 1 cut(s) | 21 |
| BcoDI | GTCTC | 2 cut(s) | 58, 271 |
| BlpI | GCTNAGC | 2 cut(s) | 158, 171 |
| Bme18I | GGWCC | 1 cut(s) | 234 |
| BmgT120I | GGNCC | 1 cut(s) | 234 |
| BmrI | ACTGGG | 1 cut(s) | 23 |
| BmsI | GCATC | 1 cut(s) | 144 |
| BmuI | ACTGGG | 1 cut(s) | 23 |
| BpmI | CTGGAG | 1 cut(s) | 238 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 158, 171 |
| Bse1I | ACTGG | 1 cut(s) | 29 |
| BseMII | CTCAG | 2 cut(s) | 149, 162 |
| BseNI | ACTGG | 1 cut(s) | 29 |
| BslFI | GGGAC | 1 cut(s) | 26 |
| BsmAI | GTCTC | 2 cut(s) | 58, 271 |
| BsmBI | CGTCTC | 1 cut(s) | 271 |
| BsmFI | GGGAC | 1 cut(s) | 26 |
| Bsp1407I | TGTACA | 1 cut(s) | 112 |
| Bsp143I | GATC | 1 cut(s) | 21 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 158, 171 |
| BspACI | CCGC | 1 cut(s) | 34 |
| BspCNI | CTCAG | 2 cut(s) | 150, 163 |
| BsrGI | TGTACA | 1 cut(s) | 112 |
| BsrI | ACTGG | 1 cut(s) | 29 |
| BssMI | GATC | 1 cut(s) | 21 |
| BssSI | CACGAG | 1 cut(s) | 60 |
| Bst2BI | CACGAG | 1 cut(s) | 60 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 278 |
| BstAUI | TGTACA | 1 cut(s) | 112 |
| BstC8I | GCNNGC | 2 cut(s) | 48, 73 |
| BstDEI | CTNAG | 2 cut(s) | 158, 171 |
| BstKTI | GATC | 1 cut(s) | 24 |
| BstMAI | GTCTC | 2 cut(s) | 58, 271 |
| BstMBI | GATC | 1 cut(s) | 21 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 278 |
| Cac8I | GCNNGC | 2 cut(s) | 48, 73 |
| CaiI | CAGNNNCTG | 1 cut(s) | 157 |
| Cfr13I | GGNCC | 1 cut(s) | 234 |
| Csp6I | GTAC | 1 cut(s) | 113 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 128, 163 |
| CviAII | CATG | 1 cut(s) | 278 |
| CviJI | RGCY | 7 cut(s) | 46, 71, 100, 126, 170, 175, 254 |
| CviKI_1 | RGCY | 7 cut(s) | 46, 71, 100, 126, 170, 175, 254 |
| CviQI | GTAC | 1 cut(s) | 113 |
| DdeI | CTNAG | 2 cut(s) | 158, 171 |
| DpnI | GATC | 1 cut(s) | 23 |
| DpnII | GATC | 1 cut(s) | 21 |
| EciI | GGCGGA | 1 cut(s) | 23 |
| Eco47I | GGWCC | 1 cut(s) | 234 |
| Esp3I | CGTCTC | 1 cut(s) | 271 |
| FaeI | CATG | 1 cut(s) | 281 |
| FaiI | YATR | 2 cut(s) | 246, 279 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 1 cut(s) | 26 |
| FatI | CATG | 1 cut(s) | 277 |
| GsuI | CTGGAG | 1 cut(s) | 238 |
| Hin1II | CATG | 1 cut(s) | 281 |
| HindIII | AAGCTT | 1 cut(s) | 98 |
| HphI | GGTGA | 1 cut(s) | 176 |
| Hpy166II | GTNNAC | 1 cut(s) | 203 |
| Hpy188III | TCNNGA | 3 cut(s) | 104, 131, 217 |
| Hpy8I | GTNNAC | 1 cut(s) | 203 |
| Hpy99I | CGWCG | 1 cut(s) | 110 |
| HpyAV | CCTTC | 2 cut(s) | 223, 271 |
| HpyCH4IV | ACGT | 1 cut(s) | 199 |
| HpyCH4V | TGCA | 2 cut(s) | 139, 272 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 278 |
| HpyF3I | CTNAG | 2 cut(s) | 158, 171 |
| HpySE526I | ACGT | 1 cut(s) | 199 |
| Hsp92II | CATG | 1 cut(s) | 281 |
| Kzo9I | GATC | 1 cut(s) | 21 |
| LpnPI | CCDG | 4 cut(s) | 28, 42, 72, 202 |
| LweI | GCATC | 1 cut(s) | 144 |
| MaeII | ACGT | 1 cut(s) | 199 |
| MalI | GATC | 1 cut(s) | 23 |
| MboI | GATC | 1 cut(s) | 21 |
| MboII | GAAGA | 1 cut(s) | 16 |
| MmeI | TCCRAC | 1 cut(s) | 261 |
| MnlI | CCTC | 1 cut(s) | 265 |
| MseI | TTAA | 1 cut(s) | 66 |
| MslI | CAYNNNNRTG | 1 cut(s) | 108 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 278 |
| NdeII | GATC | 1 cut(s) | 21 |
| NlaIII | CATG | 1 cut(s) | 281 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 205 |
| PspPI | GGNCC | 1 cut(s) | 234 |
| PstNI | CAGNNNCTG | 1 cut(s) | 157 |
| RsaI | GTAC | 1 cut(s) | 114 |
| RsaNI | GTAC | 1 cut(s) | 113 |
| RseI | CAYNNNNRTG | 1 cut(s) | 108 |
| SaqAI | TTAA | 1 cut(s) | 66 |
| Sau3AI | GATC | 1 cut(s) | 21 |
| Sau96I | GGNCC | 1 cut(s) | 234 |
| SetI | ASST | 4 cut(s) | 102, 172, 177, 202 |
| SfaNI | GCATC | 1 cut(s) | 144 |
| SinI | GGWCC | 1 cut(s) | 234 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 108 |
| SsiI | CCGC | 1 cut(s) | 34 |
| TaiI | ACGT | 1 cut(s) | 202 |
| TatI | WGTACW | 1 cut(s) | 112 |
| Tru1I | TTAA | 1 cut(s) | 66 |
| Tru9I | TTAA | 1 cut(s) | 66 |
| VpaK11BI | GGWCC | 1 cut(s) | 234 |