Rorug02G0351200

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012833
Physical Location & Seq
Reverse (-)
44144012 .. 44144847
836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0351200.1

Sequence Viewer

Length: 384 bp
ATGTCTACAATTATAATACTTTTGGTTGTCAAGGTGGACAAAGTTTATCTTGGTACACCTACAAAAATAGCTATTCTGGACCATGAAAGAAAGAGAACATTTGTCTTGCGCAAGGATGGACTTCCAGATGCTATTGTTTGGAATCCATGGGAGAAGAAAGCAAAGGCAATTCCTGATTTTGGGGATGATGAATACAAGCATATGCTCTGTGTACAGGCTGCTTGCGTGGAGACGCCTATTACTTTGAAACCCGGTGAAGAATGGAGAGGAAGGCAAGAACTGTCTGCTGTTCCTTCCAGTTATTGCAGTGGACAACTTGACCCACAGAAGGTACCGCATGGCGGTTATGTGATTTGCCTTTTCATGTATACCTTGTACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEAD_2 Helicase_C_2

Protein Analysis

127

Amino Acids

14.42

Weight (kDa)

8.32

Isoelectric Point (pI)

28.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 11 - 94 5.9e-18 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012833)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G16070
fragaria_vesca FvH4_6g31461
malus_domestica MD09G1210900.v1.1 MD17G1193700.v1.1
prunus_persica Prupe.3G069200_v2.0.a1
pyrus_communis pycom09g12850
rosa_chinensis RchiOBHm_Chr2g0138311
rosa_laevigata RLG00000019733
rosa_multiflora Rmu_sc0002475.1_g000007
rosa_roxburghii Rroxscaffold_2G00106340
rosa_rugosa Rorug02G0351100 Rorug02G0351200
rosa_samantha Rh2AG398800 Rh2BG408800 Rh2BG410200 Rh2CG385600 Rh2DG419100
rosa_wichuraiana Rw2G032500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 14
Acc16I TGCGCA 1 cut(s) 110
Acc65I GGTACC 1 cut(s) 331
AccB1I GGYRCC 1 cut(s) 331
AccI GTMKAC 2 cut(s) 5, 368
AciI CCGC 2 cut(s) 335, 342
AcyI GRCGYC 1 cut(s) 233
AfaI GTAC 4 cut(s) 55, 213, 333, 377
AfiI CCNNNNNNNGG 3 cut(s) 179, 328, 341
AgsI TTSAA 1 cut(s) 247
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 218
Asp718I GGTACC 1 cut(s) 331
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 79
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 331
BbvI GCAGC 1 cut(s) 205
BccI CCATC 1 cut(s) 110
BcnI CCSGG 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 224
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 333
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 1 cut(s) 118
BpuMI CCSGG 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 146
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 328, 341
Bse1I ACTGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 146
BseGI GGATG 2 cut(s) 121, 190
BseLI CCNNNNNNNGG 3 cut(s) 179, 328, 341
BseNI ACTGG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 205
BshNI GGYRCC 1 cut(s) 331
BsiSI CCGG 1 cut(s) 252
BslI CCNNNNNNNGG 3 cut(s) 179, 328, 341
BsmAI GTCTC 1 cut(s) 224
BsmBI CGTCTC 1 cut(s) 224
Bsp1407I TGTACA 2 cut(s) 211, 375
Bsp19I CCATGG 1 cut(s) 146
BspACI CCGC 2 cut(s) 335, 342
BspLI GGNNCC 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 331
BsrGI TGTACA 2 cut(s) 211, 375
BsrI ACTGG 1 cut(s) 297
BssECI CCNNGG 1 cut(s) 146
BssNAI GTATAC 1 cut(s) 369
BssNI GRCGYC 1 cut(s) 233
BssT1I CCWWGG 1 cut(s) 146
Bst1107I GTATAC 1 cut(s) 369
Bst4CI ACNGT 1 cut(s) 282
BstACI GRCGYC 1 cut(s) 233
BstAUI TGTACA 2 cut(s) 211, 375
BstC8I GCNNGC 1 cut(s) 223
BstDSI CCRYGG 1 cut(s) 146
BstF5I GGATG 2 cut(s) 121, 190
BstHHI GCGC 1 cut(s) 111
BstMAI GTCTC 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 205
BstZ17I GTATAC 1 cut(s) 369
BtgI CCRYGG 1 cut(s) 146
BtsCI GGATG 2 cut(s) 121, 190
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 223
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 79
CseI GACGC 1 cut(s) 241
Csp6I GTAC 4 cut(s) 54, 212, 332, 376
CviAII CATG 4 cut(s) 83, 147, 338, 364
CviJI RGCY 2 cut(s) 71, 218
CviKI_1 RGCY 2 cut(s) 71, 218
CviQI GTAC 4 cut(s) 54, 212, 332, 376
Eco130I CCWWGG 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 146
ErhI CCWWGG 1 cut(s) 146
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 4 cut(s) 86, 150, 341, 367
FaiI YATR 9 cut(s) 14, 84, 148, 201, 203, 339, 348, 365, 369
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FatI CATG 4 cut(s) 82, 146, 337, 363
FauNDI CATATG 1 cut(s) 201
FblI GTMKAC 2 cut(s) 5, 368
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 2 cut(s) 128, 197
Fsp4HI GCNGC 1 cut(s) 219
FspI TGCGCA 1 cut(s) 110
GlaI GCGC 1 cut(s) 110
GluI GCNGC 1 cut(s) 219
HapII CCGG 1 cut(s) 252
HgaI GACGC 1 cut(s) 241
HhaI GCGC 1 cut(s) 111
Hin1I GRCGYC 1 cut(s) 233
Hin1II CATG 4 cut(s) 86, 150, 341, 367
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HinfI GANTC 1 cut(s) 142
HpaII CCGG 1 cut(s) 252
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 6 cut(s) 6, 37, 56, 212, 311, 369
Hpy188III TCNNGA 3 cut(s) 77, 125, 173
Hpy8I GTNNAC 6 cut(s) 6, 37, 56, 212, 311, 369
HpyAV CCTTC 3 cut(s) 264, 303, 322
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4V TGCA 1 cut(s) 306
Hsp92I GRCGYC 1 cut(s) 233
Hsp92II CATG 4 cut(s) 86, 150, 341, 367
HspAI GCGC 1 cut(s) 109
KpnI GGTACC 1 cut(s) 335
LpnPI CCDG 6 cut(s) 62, 138, 186, 200, 265, 310
Lsp1109I GCAGC 1 cut(s) 205
LweI GCATC 1 cut(s) 118
MboII GAAGA 2 cut(s) 166, 269
MluCI AATT 2 cut(s) 9, 168
MnlI CCTC 1 cut(s) 260
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 1 cut(s) 252
NciI CCSGG 1 cut(s) 252
NcoI CCATGG 1 cut(s) 146
NdeI CATATG 1 cut(s) 201
NlaIII CATG 4 cut(s) 86, 150, 341, 367
NlaIV GGNNCC 1 cut(s) 333
NsbI TGCGCA 1 cut(s) 110
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 1 cut(s) 220
PsiI TTATAA 1 cut(s) 14
PspN4I GGNNCC 1 cut(s) 333
PspPI GGNCC 1 cut(s) 79
RsaI GTAC 4 cut(s) 55, 213, 333, 377
RsaNI GTAC 4 cut(s) 54, 212, 332, 376
SatI GCNGC 1 cut(s) 219
Sau96I GGNCC 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 252
SetI ASST 5 cut(s) 36, 61, 73, 333, 374
SfaNI GCATC 1 cut(s) 118
SinI GGWCC 1 cut(s) 79
Sse9I AATT 2 cut(s) 9, 168
SsiI CCGC 2 cut(s) 335, 342
StyD4I CCNGG 1 cut(s) 250
StyI CCWWGG 1 cut(s) 146
TaaI ACNGT 1 cut(s) 282
TasI AATT 2 cut(s) 9, 168
TatI WGTACW 2 cut(s) 211, 375
TfiI GAWTC 1 cut(s) 142
TscAI CASTG 1 cut(s) 313
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 3 cut(s) 99, 204, 352
TspRI CASTG 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 79
XmiI GTMKAC 2 cut(s) 5, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.