Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002475.1

Orthogroup ID

OG0012833

Physical Location & Seq

Genomic Coordinates Forward (+)

36482 .. 37159

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002475.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atggtcctaaaagaaaccatgcacaaaagcaaggtcttctatgacaaaactcttcaaaacctcaaaagcttcttctgtggaggatacaaaaaactacccaaatccctttccttgaatccttgcttttgtgggagtgacctgaaatattacccaagagatgagttttacactgattattatgatgagtgggagcctactatagatgaggtgaagaagagagatagtacatcaaaagaaacaatcaaggatgaggatccatgtagtgacagcttcatgatgtttccaaagcaaagtcctaagaagaacaaacaagaagggggattgttaagggataagaagtctagtggaggctctcgtgatcttggaaaaggaaaggaccagttatcattccagaacatgaatggtaatagagggagcaatgttttagcgaaaagaatgaaggagtttgaaatggtggatgcaggtgatgtggagcaggtgttggatgtagaagaggcacttcactactactctcgcctcaaaagtccggtgtaccttgacattgttgacaagtttttcttagatatgtactcagatttctccgtcccaccagcaccatcgatcagcatcaacaattcaaagcagagagttggctcccggagacttggctcccgaagacttggctccattaggttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD_2 Helicase_C_2

Protein Analysis

225

Amino Acids

25.89

Weight (kDa)

8.96

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16070
fragaria_vesca	FvH4_6g31461
malus_domestica	MD09G1210900.v1.1 MD17G1193700.v1.1
prunus_persica	Prupe.3G069200_v2.0.a1
pyrus_communis	pycom09g12850
rosa_chinensis	RchiOBHm_Chr2g0138311
rosa_laevigata	RLG00000019733
rosa_multiflora	Rmu_sc0002475.1_g000007
rosa_roxburghii	Rroxscaffold_2G00106340
rosa_rugosa	Rorug02G0351100 Rorug02G0351200
rosa_samantha	Rh2AG398800 Rh2BG408800 Rh2BG410200 Rh2CG385600 Rh2DG419100
rosa_wichuraiana	Rw2G032500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	452, 466
Acc36I	ACCTGC	2 cut(s)	452, 466
AclWI	GGATC	2 cut(s)	248, 261
AfaI	GTAC	3 cut(s)	226, 533, 569
AgsI	TTSAA	4 cut(s)	56, 115, 449, 618
AluBI	AGCT	2 cut(s)	69, 270
AluI	AGCT	2 cut(s)	69, 270
Alw26I	GTCTC	1 cut(s)	634
AlwI	GGATC	2 cut(s)	248, 261
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
AspS9I	GGNCC	2 cut(s)	4, 376
AsuC2I	CCSGG	1 cut(s)	637
AsuHPI	GGTGA	2 cut(s)	220, 476
AvaII	GGWCC	2 cut(s)	4, 376
BamHI	GGATCC	1 cut(s)	253
BauI	CACGAG	1 cut(s)	354
BbsI	GAAGAC	2 cut(s)	28, 661
BccI	CCATC	1 cut(s)	604
BciVI	GTATCC	1 cut(s)	77
BcnI	CCSGG	1 cut(s)	637
BcoDI	GTCTC	1 cut(s)	634
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	198
BfuAI	ACCTGC	2 cut(s)	452, 466
BfuI	GTATCC	1 cut(s)	77
Bme1390I	CCNGG	1 cut(s)	637
Bme18I	GGWCC	2 cut(s)	4, 376
BmgT120I	GGNCC	2 cut(s)	4, 376
BmiI	GGNNCC	5 cut(s)	192, 255, 634, 649, 664
BmrFI	CCNGG	1 cut(s)	637
BmsI	GCATC	2 cut(s)	448, 615
BpiI	GAAGAC	2 cut(s)	28, 661
BpuMI	CCSGG	1 cut(s)	637
Bsa29I	ATCGAT	1 cut(s)	599
BsaBI	GATNNNNATC	2 cut(s)	252, 605
BsaWI	WCCGGW	1 cut(s)	526
BsaXI	ACNNNNNCTCC	2 cut(s)	464, 494
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	1 cut(s)	424
Bse8I	GATNNNNATC	2 cut(s)	252, 605
BseCI	ATCGAT	1 cut(s)	599
BseGI	GGATG	3 cut(s)	253, 463, 490
BseJI	GATNNNNATC	2 cut(s)	252, 605
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	1 cut(s)	379
BshVI	ATCGAT	1 cut(s)	599
BsiSI	CCGG	2 cut(s)	527, 637
BslFI	GGGAC	1 cut(s)	569
BsmAI	GTCTC	1 cut(s)	634
BsmFI	GGGAC	1 cut(s)	569
Bsp143I	GATC	3 cut(s)	253, 358, 600
BspCNI	CTCAG	1 cut(s)	584
BspDI	ATCGAT	1 cut(s)	599
BspHI	TCATGA	1 cut(s)	273
BspLI	GGNNCC	5 cut(s)	192, 255, 634, 649, 664
BspMI	ACCTGC	2 cut(s)	452, 466
BspPI	GGATC	2 cut(s)	248, 261
BsrDI	GCAATG	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	379
BssMI	GATC	3 cut(s)	253, 358, 600
BssSI	CACGAG	1 cut(s)	354
Bst2BI	CACGAG	1 cut(s)	354
Bst6I	CTCTTC	3 cut(s)	57, 209, 486
BstDEI	CTNAG	3 cut(s)	297, 559, 571
BstF5I	GGATG	3 cut(s)	253, 463, 490
BstKTI	GATC	3 cut(s)	256, 361, 603
BstMAI	GTCTC	1 cut(s)	634
BstMBI	GATC	3 cut(s)	253, 358, 600
BstSCI	CCNGG	1 cut(s)	635
BstSFI	CTRYAG	1 cut(s)	198
BstV2I	GAAGAC	2 cut(s)	28, 661
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
Bsu15I	ATCGAT	1 cut(s)	599
BsuI	GTATCC	1 cut(s)	77
BsuTUI	ATCGAT	1 cut(s)	599
BtsCI	GGATG	3 cut(s)	253, 463, 490
BtsIMutI	CAGTG	1 cut(s)	168
BveI	ACCTGC	2 cut(s)	452, 466
CciI	TCATGA	1 cut(s)	273
Cfr13I	GGNCC	2 cut(s)	4, 376
ClaI	ATCGAT	1 cut(s)	599
Csp6I	GTAC	3 cut(s)	225, 532, 568
CviAII	CATG	4 cut(s)	19, 258, 274, 397
CviJI	RGCY	7 cut(s)	69, 193, 270, 351, 633, 648, 663
CviKI_1	RGCY	7 cut(s)	69, 193, 270, 351, 633, 648, 663
CviQI	GTAC	3 cut(s)	225, 532, 568
DdeI	CTNAG	3 cut(s)	297, 559, 571
DpnI	GATC	3 cut(s)	255, 360, 602
DpnII	GATC	3 cut(s)	253, 358, 600
Eam1104I	CTCTTC	3 cut(s)	57, 209, 486
EarI	CTCTTC	3 cut(s)	57, 209, 486
Eco47I	GGWCC	2 cut(s)	4, 376
FaeI	CATG	4 cut(s)	22, 261, 277, 400
FaiI	YATR	8 cut(s)	20, 42, 180, 200, 259, 275, 398, 566
FalI	AAGNNNNNCTT	4 cut(s)	483, 515, 542, 574
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	4 cut(s)	18, 257, 273, 396
FokI	GGATG	3 cut(s)	260, 470, 497
FspBI	CTAG	1 cut(s)	342
HapII	CCGG	2 cut(s)	527, 637
Hin1II	CATG	4 cut(s)	22, 261, 277, 400
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	1 cut(s)	67
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	2 cut(s)	527, 637
HphI	GGTGA	2 cut(s)	220, 476
Hpy166II	GTNNAC	2 cut(s)	532, 547
Hpy188I	TCNGA	1 cut(s)	574
Hpy188III	TCNNGA	4 cut(s)	274, 356, 391, 651
Hpy8I	GTNNAC	2 cut(s)	532, 547
HpyAV	CCTTC	2 cut(s)	308, 433
HpyCH4V	TGCA	2 cut(s)	22, 461
HpyF3I	CTNAG	3 cut(s)	297, 559, 571
Hsp92II	CATG	4 cut(s)	22, 261, 277, 400
Kzo9I	GATC	3 cut(s)	253, 358, 600
LmnI	GCTCC	6 cut(s)	190, 414, 472, 638, 653, 668
LpnPI	CCDG	8 cut(s)	152, 392, 404, 447, 461, 540, 603, 650
LweI	GCATC	2 cut(s)	448, 615
MaeI	CTAG	1 cut(s)	342
MaeIII	GTNAC	2 cut(s)	134, 263
MalI	GATC	3 cut(s)	255, 360, 602
MboI	GATC	3 cut(s)	253, 358, 600
MboII	GAAGA	8 cut(s)	28, 44, 64, 223, 226, 313, 503, 666
MflI	RGATCY	1 cut(s)	253
MluCI	AATT	1 cut(s)	613
MmeI	TCCRAC	1 cut(s)	462
MnlI	CCTC	8 cut(s)	71, 74, 199, 244, 341, 404, 487, 527
MseI	TTAA	1 cut(s)	326
MspI	CCGG	2 cut(s)	527, 637
MspR9I	CCNGG	1 cut(s)	637
NciI	CCSGG	1 cut(s)	637
NdeII	GATC	3 cut(s)	253, 358, 600
NlaIII	CATG	4 cut(s)	22, 261, 277, 400
NlaIV	GGNNCC	5 cut(s)	192, 255, 634, 649, 664
NmuCI	GTSAC	2 cut(s)	134, 263
PagI	TCATGA	1 cut(s)	273
PaqCI	CACCTGC	2 cut(s)	452, 466
PfeI	GAWTC	1 cut(s)	115
PfoI	TCCNGGA	1 cut(s)	635
PspN4I	GGNNCC	5 cut(s)	192, 255, 634, 649, 664
PspPI	GGNCC	2 cut(s)	4, 376
PsuI	RGATCY	1 cut(s)	253
RsaI	GTAC	3 cut(s)	226, 533, 569
RsaNI	GTAC	3 cut(s)	225, 532, 568
SaqAI	TTAA	1 cut(s)	326
Sau3AI	GATC	3 cut(s)	253, 358, 600
Sau96I	GGNCC	2 cut(s)	4, 376
ScrFI	CCNGG	1 cut(s)	637
SfaNI	GCATC	2 cut(s)	448, 615
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	2 cut(s)	4, 376
Sse9I	AATT	1 cut(s)	613
SspI	AATATT	1 cut(s)	146
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	635
TaqI	TCGA	1 cut(s)	599
TasI	AATT	1 cut(s)	613
TatI	WGTACW	2 cut(s)	224, 567
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	2 cut(s)	134, 263
Tsp45I	GTSAC	2 cut(s)	134, 263
TspDTI	ATGAA	3 cut(s)	262, 413, 452
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	4, 376
XcmI	CCANNNNNNNNNTGG	1 cut(s)	398
XspI	CTAG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.