Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0012833

Physical Location & Seq

Genomic Coordinates Forward (+)

20571007 .. 20571627

Gene Structure 621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1210900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGTGCTAGAAAACACCATTGCCAAAAGCAAAAAACTCATTCGAAAAACTCTCGGGAACCTCAAGTCCTTCTTCTGTGGAGGGTACAAGAAACTGCCCAAAACCATTTCCTTCAATCCCTTCTATTGTGGGAGAGACCTGAAGTATCAGCACCCAACAGATAACTTGTACGCCGATTTTTATGATGAGTGGGAGTCCACTCTGGGTAATGTGACGAAGATAGATAGCGCGCCAGAAGAACCAACAAAGGAAGAAGACCAATGTAGCCCTAAGAAGATCAAACAAGAAGGGGGATTAATGCAGATGAAGCAGACTGGGAGTTCTCATCTACAAAAAGGAGAAGCTCGGGCATCTTCACAGAACGCAAATGCAGAAAGCTATACTTTAGCAAGAAGGATGAAGGAGTTTGAAATGGTGGATTCAGGTGATGTGGAACAAGTGCTGGATGTAGAAGAGGCGCTTCACTACTACTCCCGCCTCAAAAGTCCGGCCTACCTTGACATTGTGGACAAGTTCTTCTTGGATATGTACGCAGACTTCTCCATTCCACCAGCGCCTATCAGCGTCAACAATTCAAAGCGGAGACTGGGCTCGCAGAGACTTGGCTCGATGAGGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

23.46

Weight (kDa)

8.29

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16070
fragaria_vesca	FvH4_6g31461
malus_domestica	MD09G1210900.v1.1 MD17G1193700.v1.1
prunus_persica	Prupe.3G069200_v2.0.a1
pyrus_communis	pycom09g12850
rosa_chinensis	RchiOBHm_Chr2g0138311
rosa_laevigata	RLG00000019733
rosa_multiflora	Rmu_sc0002475.1_g000007
rosa_roxburghii	Rroxscaffold_2G00106340
rosa_rugosa	Rorug02G0351100 Rorug02G0351200
rosa_samantha	Rh2AG398800 Rh2BG408800 Rh2BG410200 Rh2CG385600 Rh2DG419100
rosa_wichuraiana	Rw2G032500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	230
AciI	CCGC	2 cut(s)	475, 580
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	3 cut(s)	86, 170, 530
AgsI	TTSAA	3 cut(s)	115, 410, 576
AloI	GAACNNNNNNTCC	2 cut(s)	50, 82
AluBI	AGCT	2 cut(s)	344, 378
AluI	AGCT	2 cut(s)	344, 378
Alw26I	GTCTC	3 cut(s)	129, 577, 592
Ama87I	CYCGRG	2 cut(s)	53, 345
AoxI	GGCC	1 cut(s)	489
AseI	ATTAAT	1 cut(s)	296
AspLEI	GCGC	4 cut(s)	230, 232, 460, 556
AsuHPI	GGTGA	1 cut(s)	437
AsuII	TTCGAA	1 cut(s)	43
AvaI	CYCGRG	2 cut(s)	53, 345
BanII	GRGCYC	1 cut(s)	593
BarI	GAAGNNNNNNTAC	2 cut(s)	521, 553
BbsI	GAAGAC	1 cut(s)	261
BcoDI	GTCTC	3 cut(s)	129, 577, 592
BfaI	CTAG	1 cut(s)	8
BfoI	RGCGCY	2 cut(s)	461, 557
BmeT110I	CYCGRG	2 cut(s)	53, 345
BmiI	GGNNCC	1 cut(s)	59
BmrI	ACTGGG	2 cut(s)	324, 596
BmsI	GCATC	1 cut(s)	359
BmuI	ACTGGG	2 cut(s)	324, 596
BpiI	GAAGAC	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bse1I	ACTGG	2 cut(s)	319, 591
Bse3DI	GCAATG	1 cut(s)	18
BseGI	GGATG	2 cut(s)	402, 451
BseMI	GCAATG	1 cut(s)	18
BseNI	ACTGG	2 cut(s)	319, 591
BsePI	GCGCGC	1 cut(s)	228
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	491
BsiHKCI	CYCGRG	2 cut(s)	53, 345
BsiSI	CCGG	1 cut(s)	488
BsmAI	GTCTC	3 cut(s)	129, 577, 592
BsnI	GGCC	1 cut(s)	491
Bso31I	GGTCTC	1 cut(s)	129
BsoBI	CYCGRG	2 cut(s)	53, 345
Bsp119I	TTCGAA	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	2 cut(s)	475, 580
BspANI	GGCC	1 cut(s)	491
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	59
BspT104I	TTCGAA	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	2 cut(s)	319, 591
BssHII	GCGCGC	1 cut(s)	228
BssMI	GATC	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	447
BstBI	TTCGAA	1 cut(s)	43
BstC8I	GCNNGC	2 cut(s)	230, 593
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	402, 451
BstFNI	CGCG	1 cut(s)	230
BstH2I	RGCGCY	2 cut(s)	461, 557
BstHHI	GCGC	4 cut(s)	230, 232, 460, 556
BstKTI	GATC	1 cut(s)	279
BstMAI	GTCTC	3 cut(s)	129, 577, 592
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	1 cut(s)	307
BstUI	CGCG	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	261
BsuRI	GGCC	1 cut(s)	491
BtsCI	GGATG	2 cut(s)	402, 451
Cac8I	GCNNGC	2 cut(s)	230, 593
CfoI	GCGC	4 cut(s)	230, 232, 460, 556
CseI	GACGC	1 cut(s)	553
Csp6I	GTAC	3 cut(s)	85, 169, 529
CviJI	RGCY	6 cut(s)	267, 344, 378, 491, 591, 606
CviKI_1	RGCY	6 cut(s)	267, 344, 378, 491, 591, 606
CviQI	GTAC	3 cut(s)	85, 169, 529
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	593
Eco31I	GGTCTC	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	161
Eco88I	CYCGRG	2 cut(s)	53, 345
EcoT38I	GRGCYC	1 cut(s)	593
FaiI	YATR	3 cut(s)	183, 381, 527
FalI	AAGNNNNNCTT	8 cut(s)	56, 88, 367, 399, 444, 476, 503, 535
FauI	CCCGC	1 cut(s)	482
FokI	GGATG	2 cut(s)	409, 458
FriOI	GRGCYC	1 cut(s)	593
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	4 cut(s)	229, 231, 459, 555
HaeII	RGCGCY	2 cut(s)	461, 557
HaeIII	GGCC	1 cut(s)	491
HapII	CCGG	1 cut(s)	488
HgaI	GACGC	1 cut(s)	553
HhaI	GCGC	4 cut(s)	230, 232, 460, 556
Hin6I	GCGC	4 cut(s)	228, 230, 458, 554
HinP1I	GCGC	4 cut(s)	228, 230, 458, 554
HincII	GTYRAC	1 cut(s)	568
HindII	GTYRAC	1 cut(s)	568
HinfI	GANTC	2 cut(s)	194, 419
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	3 cut(s)	198, 508, 568
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	3 cut(s)	198, 508, 568
HpyAV	CCTTC	6 cut(s)	79, 121, 130, 281, 387, 394
HpyCH4V	TGCA	2 cut(s)	301, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	307
HpyF3I	CTNAG	1 cut(s)	270
HspAI	GCGC	4 cut(s)	228, 230, 458, 554
Kzo9I	GATC	1 cut(s)	276
LpnPI	CCDG	9 cut(s)	152, 188, 246, 300, 408, 428, 501, 564, 572
LweI	GCATC	1 cut(s)	359
MaeI	CTAG	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	9 cut(s)	64, 229, 248, 263, 266, 286, 345, 464, 508
MhlI	GDGCHC	1 cut(s)	593
MluCI	AATT	1 cut(s)	571
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	5 cut(s)	71, 74, 448, 488, 606
MseI	TTAA	1 cut(s)	296
MspI	CCGG	1 cut(s)	488
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	307
NdeII	GATC	1 cut(s)	276
NlaIV	GGNNCC	1 cut(s)	59
NmuCI	GTSAC	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	43
PauI	GCGCGC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	419
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PshBI	ATTAAT	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	59
PteI	GCGCGC	1 cut(s)	228
RsaI	GTAC	3 cut(s)	86, 170, 530
RsaNI	GTAC	3 cut(s)	85, 169, 529
SaqAI	TTAA	1 cut(s)	296
Sau3AI	GATC	1 cut(s)	276
SchI	GAGTC	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	593
SetI	ASST	7 cut(s)	63, 141, 346, 380, 427, 498, 617
SfaNI	GCATC	1 cut(s)	359
SfuI	TTCGAA	1 cut(s)	43
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	571
SsiI	CCGC	2 cut(s)	475, 580
SspMI	CTAG	1 cut(s)	8
TaqI	TCGA	2 cut(s)	43, 608
TasI	AATT	1 cut(s)	571
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	2 cut(s)	320, 413
VspI	ATTAAT	1 cut(s)	296
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.