FvH4_6g33670

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012129
Physical Location & Seq
Reverse (-)
26689623 .. 26693013
3391 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33670.t1

Sequence Viewer

Length: 1188 bp
ATGGAAGATTTCTCGGAGCAGAGTCGATTCGATGACAACCAAATCGGGTATGATGGGGAGGAACAATTTCAAGAACAATATGAACAGCCGCAGGAGCAGCAATTTGATTCCGGCCGTGAGTTTGAGGGCAACCATAACAACAGCAACAACAACGTAGATAGTGAAGGCAATGAGTTTAGGGATTCTTCCTTCAGTAGTCGTGCCGATGCCGCCGCAGGGAAACTATTCGTAGGAGGCGTTTCGTGGGAGACCACTGAAGATACCTTTACCAATTACTTCAGCAAATATGGAGAAATAGCAGATTCTGTTATAATGTTAGACAAACATACTGGGAGGCCAAGGGGGTTTGGATTCATAACGTTTGCTGATTCAGTGGCTGCTGATGCAGTTTTGGAGGAAGAACATGTCATAGATGGCAGAGTGGTGGAGGTGAAGAGAACTGTTCCCAGGGAGGATATCGGATTTAAGGGGGGATCAAAAAGAAAGAAAATTTTTGTTGGTGGGATACCAACATCATTGTCTGATGAGGAATTGGGTGACTATTTCTCTACATTTGGTAGCATTGTTGAGCACCAGATTATGGTAGATCATAAAACTGGGAGGTCTAGAGGTTTTGGGTTTGTCACTTTTGAGAATGAAGACTCTCTTGACAAGGTATTCTCAGAAGGAAAAATACATGAACTTGGAGGCAAACAGGTGGAAATAAAAAGGGCTGAACCTAAAAGGCCTGGTGACTTTAGCGGTAGTGCTGCAAGGTCATATGGTGTCTTAGGCGGCGCTGCAGCTGGATATGGTGGATATAATTCTGGAGGTCGTTTCAACGGAAAAATGGGCAGGGGCTATGGTGGACCTGGTGGATATGGTGCTGCCTATGGGAATTACAACAATTATGCTGGAAACTATGCTGCGAACTATGCAGGTTTTTATGGTGGTTATGGTGGATATGGATATGGTTTTGGGTTTGGTGGACCCATGTATGGCAATGCCGGATATGGAGCGAGCGGTTATGGCATGCCTGGTGGTTATGGCGCTCCTACTGGTTATGGTGGTGGTAAAGGGTATGGAAGTGGCTCTGCTGATCGGGGTGGTAGGGGTCGGGGTCGTGGTGGTAGCAGTTACAATGCTGGTAGAGGATATGGTAGGAGTGGTGATTCTACAACCGGAAGATATCATCCTTATCAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 ko03040 map03015 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

396

Amino Acids

42.23

Weight (kDa)

5.26

Isoelectric Point (pI)

32.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 75 - 140 4.7e-14 RNA recognition motif
RRM_7 PF16367 162 - 224 2.4e-06 RNA recognition motif
RRM_1 PF00076 164 - 232 4e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17640 AT1G17640 AT1G17640
fragaria_vesca FvH4_6g33670
malus_domestica MD09G1191800.v1.1
prunus_persica Prupe.3G048000_v2.0.a1
pyrus_communis pycom07g10230 pycom09g10830
rosa_chinensis RchiOBHm_Chr2g0143581
rosa_laevigata RLG00000020048
rosa_multiflora Rmu_ssc0000231.1_g000013
rosa_roxburghii Rroxscaffold_2G00101640
rosa_rugosa Rorug02G0384000 Rorug02G0384000
rosa_samantha Rh2AG435900 Rh2BG443500 Rh2CG422000 Rh2DG453900
rosa_wichuraiana Rw2G035520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 311
Acc36I ACCTGC 1 cut(s) 908
AccB7I CCANNNNNTGG 1 cut(s) 580
AccBSI CCGCTC 1 cut(s) 1002
AciI CCGC 6 cut(s) 89, 210, 213, 741, 774, 1002
AclI AACGTT 1 cut(s) 359
AclWI GGATC 1 cut(s) 481
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 1 cut(s) 489
AcuI CTGAAG 3 cut(s) 175, 262, 276
AfiI CCNNNNNNNGG 3 cut(s) 216, 580, 977
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 2 cut(s) 71, 820
AjnI CCWGG 4 cut(s) 446, 727, 850, 1015
AluBI AGCT 1 cut(s) 785
AluI AGCT 1 cut(s) 785
Alw21I GWGCWC 1 cut(s) 573
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 1 cut(s) 481
AlwNI CAGNNNCTG 2 cut(s) 305, 377
AoxI GGCC 3 cut(s) 112, 335, 725
ApeKI GCWGC 7 cut(s) 97, 377, 749, 779, 782, 866, 905
ApoI RAATTY 1 cut(s) 489
Asp700I GAANNNNTTC 2 cut(s) 66, 224
AspLEI GCGC 2 cut(s) 779, 1031
AspS9I GGNCC 2 cut(s) 848, 968
AsuHPI GGTGA 4 cut(s) 442, 548, 743, 1160
AvaII GGWCC 2 cut(s) 848, 968
BarI GAAGNNNNNNTAC 2 cut(s) 657, 689
BbsI GAAGAC 1 cut(s) 645
Bbv12I GWGCWC 1 cut(s) 573
BbvI GCAGC 7 cut(s) 109, 364, 736, 766, 794, 853, 892
BccI CCATC 2 cut(s) 47, 407
BceAI ACGGC 1 cut(s) 99
BciT130I CCWGG 4 cut(s) 448, 729, 852, 1017
BciVI GTATCC 1 cut(s) 498
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 1 cut(s) 606
BfmI CTRYAG 1 cut(s) 780
BfoI RGCGCY 2 cut(s) 780, 1032
BfuAI ACCTGC 1 cut(s) 908
BfuI GTATCC 1 cut(s) 498
Bme1390I CCNGG 4 cut(s) 448, 729, 852, 1017
Bme18I GGWCC 2 cut(s) 848, 968
BmgT120I GGNCC 2 cut(s) 848, 968
BmiI GGNNCC 1 cut(s) 970
BmrFI CCNGG 4 cut(s) 448, 729, 852, 1017
BmrI ACTGGG 2 cut(s) 339, 606
BmsI GCATC 2 cut(s) 196, 373
BmuI ACTGGG 2 cut(s) 339, 606
BpiI GAAGAC 1 cut(s) 645
BpmI CTGGAG 1 cut(s) 828
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 3 cut(s) 338, 446, 447
BsaWI WCCGGW 1 cut(s) 1160
Bsc4I CCNNNNNNNGG 3 cut(s) 216, 580, 977
Bse1I ACTGG 3 cut(s) 334, 601, 1042
Bse3DI GCAATG 2 cut(s) 175, 988
BseBI CCWGG 4 cut(s) 448, 729, 852, 1017
BseDI CCNNGG 3 cut(s) 338, 446, 447
BseGI GGATG 1 cut(s) 1171
BseLI CCNNNNNNNGG 3 cut(s) 216, 580, 977
BseMI GCAATG 2 cut(s) 175, 988
BseMII CTCAG 1 cut(s) 675
BseNI ACTGG 3 cut(s) 334, 601, 1042
BseX3I CGGCCG 1 cut(s) 112
BseXI GCAGC 7 cut(s) 109, 364, 736, 766, 794, 853, 892
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 3 cut(s) 114, 337, 727
BsiEI CGRYCG 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 573
BsiSI CCGG 3 cut(s) 111, 987, 1161
BslI CCNNNNNNNGG 3 cut(s) 216, 580, 977
BsmAI GTCTC 1 cut(s) 242
BsnI GGCC 3 cut(s) 114, 337, 727
Bso31I GGTCTC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 573
Bsp143I GATC 3 cut(s) 473, 586, 1078
BspACI CCGC 6 cut(s) 89, 210, 213, 741, 774, 1002
BspANI GGCC 3 cut(s) 114, 337, 727
BspCNI CTCAG 1 cut(s) 674
BspLI GGNNCC 1 cut(s) 970
BspMAI CTGCAG 1 cut(s) 784
BspMI ACCTGC 1 cut(s) 908
BspPI GGATC 1 cut(s) 481
BspTNI GGTCTC 1 cut(s) 242
BsrBI CCGCTC 1 cut(s) 1002
BsrDI GCAATG 2 cut(s) 175, 988
BsrI ACTGG 3 cut(s) 334, 601, 1042
BssECI CCNNGG 3 cut(s) 338, 446, 447
BssMI GATC 3 cut(s) 473, 586, 1078
BssT1I CCWWGG 1 cut(s) 338
Bst2UI CCWGG 4 cut(s) 448, 729, 852, 1017
Bst4CI ACNGT 1 cut(s) 442
Bst6I CTCTTC 1 cut(s) 428
BstC8I GCNNGC 2 cut(s) 1000, 1013
BstDEI CTNAG 2 cut(s) 661, 769
BstF5I GGATG 1 cut(s) 1171
BstH2I RGCGCY 2 cut(s) 780, 1032
BstHHI GCGC 2 cut(s) 779, 1031
BstKTI GATC 3 cut(s) 476, 589, 1081
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 3 cut(s) 473, 586, 1078
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 6 cut(s) 94, 97, 209, 383, 914, 1008
BstNI CCWGG 4 cut(s) 448, 729, 852, 1017
BstNSI RCATGY 2 cut(s) 407, 1015
BstSCI CCNGG 4 cut(s) 446, 727, 850, 1015
BstSFI CTRYAG 1 cut(s) 780
BstV1I GCAGC 7 cut(s) 109, 364, 736, 766, 794, 853, 892
BstV2I GAAGAC 1 cut(s) 645
BstZI CGGCCG 1 cut(s) 112
BsuI GTATCC 1 cut(s) 498
BsuRI GGCC 3 cut(s) 114, 337, 727
BtsCI GGATG 1 cut(s) 1171
BtsIMutI CAGTG 2 cut(s) 252, 378
BveI ACCTGC 1 cut(s) 908
Cac8I GCNNGC 2 cut(s) 1000, 1013
CaiI CAGNNNCTG 2 cut(s) 305, 377
CfoI GCGC 2 cut(s) 779, 1031
Cfr13I GGNCC 2 cut(s) 848, 968
CsiI ACCWGGT 1 cut(s) 850
CviAII CATG 4 cut(s) 404, 677, 973, 1012
CviJI RGCY 9 cut(s) 88, 114, 337, 377, 713, 727, 785, 840, 1071
CviKI_1 RGCY 9 cut(s) 88, 114, 337, 377, 713, 727, 785, 840, 1071
DdeI CTNAG 2 cut(s) 661, 769
DpnI GATC 3 cut(s) 475, 588, 1080
DpnII GATC 3 cut(s) 473, 586, 1078
EaeI YGGCCR 1 cut(s) 112
EagI CGGCCG 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
EclXI CGGCCG 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 338
Eco147I AGGCCT 1 cut(s) 727
Eco31I GGTCTC 1 cut(s) 242
Eco32I GATATC 2 cut(s) 457, 1169
Eco47I GGWCC 2 cut(s) 848, 968
Eco52I CGGCCG 1 cut(s) 112
Eco57I CTGAAG 3 cut(s) 175, 262, 276
EcoRII CCWGG 4 cut(s) 446, 727, 850, 1015
EcoRV GATATC 2 cut(s) 457, 1169
EcoT14I CCWWGG 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 4 cut(s) 407, 680, 976, 1015
FalI AAGNNNNNCTT 2 cut(s) 630, 662
FatI CATG 4 cut(s) 403, 676, 972, 1011
FauNDI CATATG 1 cut(s) 760
FokI GGATG 1 cut(s) 1158
FspBI CTAG 1 cut(s) 606
GlaI GCGC 2 cut(s) 778, 1030
GsuI CTGGAG 1 cut(s) 828
HaeII RGCGCY 2 cut(s) 780, 1032
HaeIII GGCC 3 cut(s) 114, 337, 727
HapII CCGG 3 cut(s) 111, 987, 1161
HhaI GCGC 2 cut(s) 779, 1031
Hin1II CATG 4 cut(s) 407, 680, 976, 1015
Hin6I GCGC 2 cut(s) 777, 1029
HinP1I GCGC 2 cut(s) 777, 1029
HinfI GANTC 9 cut(s) 22, 27, 107, 182, 302, 351, 368, 641, 1151
HpaII CCGG 3 cut(s) 111, 987, 1161
HphI GGTGA 4 cut(s) 442, 548, 743, 1160
Hpy166II GTNNAC 2 cut(s) 848, 968
Hpy188I TCNGA 4 cut(s) 16, 461, 523, 664
Hpy188III TCNNGA 4 cut(s) 71, 606, 647, 807
Hpy8I GTNNAC 2 cut(s) 848, 968
HpyAV CCTTC 3 cut(s) 158, 199, 659
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4IV ACGT 2 cut(s) 153, 359
HpyCH4V TGCA 4 cut(s) 386, 752, 782, 917
HpyF10VI GCNNNNNNNGC 6 cut(s) 94, 97, 209, 383, 914, 1008
HpyF3I CTNAG 2 cut(s) 661, 769
HpySE526I ACGT 2 cut(s) 153, 359
Hsp92II CATG 4 cut(s) 407, 680, 976, 1015
HspAI GCGC 2 cut(s) 777, 1029
Kzo9I GATC 3 cut(s) 473, 586, 1078
LmnI GCTCC 4 cut(s) 16, 94, 995, 1036
Lsp1109I GCAGC 7 cut(s) 109, 364, 736, 766, 794, 853, 892
LweI GCATC 2 cut(s) 196, 373
MabI ACCWGGT 1 cut(s) 850
MaeI CTAG 1 cut(s) 606
MaeII ACGT 2 cut(s) 153, 359
MaeIII GTNAC 4 cut(s) 536, 622, 731, 1115
MalI GATC 3 cut(s) 475, 588, 1080
MbiI CCGCTC 1 cut(s) 1002
MboI GATC 3 cut(s) 473, 586, 1078
MboII GAAGA 7 cut(s) 17, 177, 269, 410, 445, 650, 1176
MhlI GDGCHC 1 cut(s) 573
MluCI AATT 9 cut(s) 65, 101, 271, 489, 530, 802, 877, 886, 1183
MlyI GAGTC 2 cut(s) 31, 635
MroXI GAANNNNTTC 2 cut(s) 66, 224
MseI TTAA 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 785
MspI CCGG 3 cut(s) 111, 987, 1161
MspR9I CCNGG 4 cut(s) 448, 729, 852, 1017
MvaI CCWGG 4 cut(s) 448, 729, 852, 1017
MwoI GCNNNNNNNGC 6 cut(s) 94, 97, 209, 383, 914, 1008
NdeI CATATG 1 cut(s) 760
NdeII GATC 3 cut(s) 473, 586, 1078
NlaIII CATG 4 cut(s) 407, 680, 976, 1015
NlaIV GGNNCC 1 cut(s) 970
NmuCI GTSAC 3 cut(s) 536, 622, 731
NspI RCATGY 2 cut(s) 407, 1015
PaeI GCATGC 1 cut(s) 1015
PasI CCCWGGG 1 cut(s) 447
PceI AGGCCT 1 cut(s) 727
PciI ACATGT 1 cut(s) 403
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PdmI GAANNNNTTC 2 cut(s) 66, 224
PfeI GAWTC 7 cut(s) 27, 107, 182, 302, 351, 368, 1151
PflMI CCANNNNNTGG 1 cut(s) 580
PleI GAGTC 2 cut(s) 30, 635
PpsI GAGTC 2 cut(s) 30, 635
PscI ACATGT 1 cut(s) 403
PsiI TTATAA 1 cut(s) 311
Psp1406I AACGTT 1 cut(s) 359
Psp6I CCWGG 4 cut(s) 446, 727, 850, 1015
PspGI CCWGG 4 cut(s) 446, 727, 850, 1015
PspN4I GGNNCC 1 cut(s) 970
PspPI GGNCC 2 cut(s) 848, 968
PstI CTGCAG 1 cut(s) 784
PstNI CAGNNNCTG 2 cut(s) 305, 377
PvuII CAGCTG 1 cut(s) 785
SaqAI TTAA 1 cut(s) 465
Sau3AI GATC 3 cut(s) 473, 586, 1078
Sau96I GGNCC 2 cut(s) 848, 968
SchI GAGTC 2 cut(s) 31, 635
ScrFI CCNGG 4 cut(s) 448, 729, 852, 1017
SduI GDGCHC 1 cut(s) 573
SexAI ACCWGGT 1 cut(s) 850
SfaNI GCATC 2 cut(s) 196, 373
SfcI CTRYAG 1 cut(s) 780
SinI GGWCC 2 cut(s) 848, 968
SphI GCATGC 1 cut(s) 1015
Sse9I AATT 9 cut(s) 65, 101, 271, 489, 530, 802, 877, 886, 1183
SseBI AGGCCT 1 cut(s) 727
SsiI CCGC 6 cut(s) 89, 210, 213, 741, 774, 1002
SspMI CTAG 1 cut(s) 606
StuI AGGCCT 1 cut(s) 727
StyD4I CCNGG 4 cut(s) 446, 727, 850, 1015
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 1 cut(s) 442
TaiI ACGT 2 cut(s) 156, 362
TaqI TCGA 2 cut(s) 25, 30
TasI AATT 9 cut(s) 65, 101, 271, 489, 530, 802, 877, 886, 1183
TauI GCSGC 4 cut(s) 91, 212, 215, 777
TfiI GAWTC 7 cut(s) 27, 107, 182, 302, 351, 368, 1151
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 2 cut(s) 259, 378
TseFI GTSAC 3 cut(s) 536, 622, 731
TseI GCWGC 7 cut(s) 97, 377, 749, 779, 782, 866, 905
Tsp45I GTSAC 3 cut(s) 536, 622, 731
TspDTI ATGAA 4 cut(s) 96, 343, 651, 693
TspGWI ACGGA 1 cut(s) 837
TspRI CASTG 2 cut(s) 259, 378
Van91I CCANNNNNTGG 1 cut(s) 580
VpaK11BI GGWCC 2 cut(s) 848, 968
XapI RAATTY 1 cut(s) 489
XbaI TCTAGA 1 cut(s) 605
XceI RCATGY 2 cut(s) 407, 1015
XmnI GAANNNNTTC 2 cut(s) 66, 224
XspI CTAG 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.