Rroxscaffold_2G00101640

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012129
Physical Location & Seq
Forward (+)
23552284 .. 23555724
3441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00101640.1

Sequence Viewer

Length: 1065 bp
ATGGAAGATTTCTCCGAGCAGAGTGGATTTGATGACAACCAAATCGGTTATGATGGGGAGGAGGAACAATTTCAAGAACAGCCGCAAGAGCAGCAATTCGATTCCGGGCGTGAGTTTGAGCCGAACCATAACGTAGATAGTGAAGGCAATGAGTTTAGGGAGTCTTCATTCAGGGCTGATTCGGCTGCGGGACAAACATACTGGGAGGCCAAGGGGTTTGGATTCGTAACATTTTCTGATCCAGTGGCTGCTGATGCAGTTTTGGAGGAAGAACATGTCATAGATGGCAGAGTGGTGGAGGTGAAGAGGACCGTTCCCAGGGAGGATATGGGATTTAAGGGGGGATCAAAAAGAAAGAAGATTTTTGTTGGTGGGATACCAACGTCTTTGAATGATGAGGAATTGGGTGAATATTTCTCTACATTTGGTAGCATTGTTGAACACCAGATTATGGTAGATCACAAAACTGGGAGGTCTAGAGGATTTGGATTTGTCACTTTTGAGAATGAAGATGCTCTTGACAAGGTATTCTCAGAAGGAAAAATACATGAACTTGGAGGCAAACAGGTGGAAATAAAAAGGGCTGAACCTAAAAGGCCTGGTGGTGATTTTAGTGGTAGTGCTGCAAGGTCGTATGGTGGCTTAGGTGGCCCTGCAGCTGGATATGGTGGATATAATTCTGGAGGTCGTTTCAACGGAAAAATGGGCAGGGGCTATGGCGGACCTGGTGGTTATGGCGCTGCCTATGGGAATTACAACAATTATGCTGGAAATTATGCTGCGAACTATGCAGGTTTCTATGGTGGCTATGGTGGATATGGATATGGTTTTGGGTATGGCGGACCTATGTATGGCAATGCTGGATATGGAGCGGGTGGTTATGGCATGCCTGGTGGTTATGGTGCTCCTACTGGTTATGGTGGTGGTAAAGGGTATGGAAGTGGTTCTGCTGGTCGGGGTCAAGGTAGGGGTCGGGGGCGTGGTGGTAGTAGTTATGATGCTGGTAGAGGATATGATAGGAGCGGTGATTCTACAACTGGAAGATATCATCCTTATCAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 ko03040 map03015 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

354

Amino Acids

37.64

Weight (kDa)

5.1

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_7 PF16367 119 - 181 4.4e-06 RNA recognition motif
RRM_1 PF00076 121 - 189 6.7e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17640 AT1G17640 AT1G17640
fragaria_vesca FvH4_6g33670
malus_domestica MD09G1191800.v1.1
prunus_persica Prupe.3G048000_v2.0.a1
pyrus_communis pycom07g10230 pycom09g10830
rosa_chinensis RchiOBHm_Chr2g0143581
rosa_laevigata RLG00000020048
rosa_multiflora Rmu_ssc0000231.1_g000013
rosa_roxburghii Rroxscaffold_2G00101640
rosa_rugosa Rorug02G0384000 Rorug02G0384000
rosa_samantha Rh2AG435900 Rh2BG443500 Rh2CG422000 Rh2DG453900
rosa_wichuraiana Rw2G035520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 782
AccB7I CCANNNNNTGG 1 cut(s) 451
AccBSI CCGCTC 2 cut(s) 872, 1023
AciI CCGC 6 cut(s) 83, 188, 720, 840, 872, 1023
AclWI GGATC 2 cut(s) 233, 352
AfiI CCNNNNNNNGG 4 cut(s) 318, 451, 659, 851
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 4 cut(s) 74, 391, 440, 694
AjnI CCWGG 4 cut(s) 317, 598, 724, 889
AluBI AGCT 1 cut(s) 659
AluI AGCT 1 cut(s) 659
Alw21I GWGCWC 1 cut(s) 907
AlwI GGATC 2 cut(s) 233, 352
AlwNI CAGNNNCTG 1 cut(s) 248
AoxI GGCC 3 cut(s) 207, 596, 649
ApeKI GCWGC 7 cut(s) 91, 185, 248, 623, 656, 740, 779
Asp700I GAANNNNTTC 2 cut(s) 69, 943
AspLEI GCGC 1 cut(s) 740
AspS9I GGNCC 4 cut(s) 309, 650, 722, 842
AsuC2I CCSGG 1 cut(s) 106
AsuHPI GGTGA 4 cut(s) 313, 419, 617, 1037
AvaII GGWCC 3 cut(s) 309, 722, 842
BaeI ACNNNNGTAYC 2 cut(s) 368, 401
BarI GAAGNNNNNNTAC 2 cut(s) 528, 560
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 907
BbvI GCAGC 7 cut(s) 103, 172, 235, 610, 668, 727, 766
BccI CCATC 2 cut(s) 47, 278
BciT130I CCWGG 4 cut(s) 319, 600, 726, 891
BciVI GTATCC 1 cut(s) 369
BcnI CCSGG 1 cut(s) 106
BfaI CTAG 1 cut(s) 477
BfmI CTRYAG 1 cut(s) 654
BfoI RGCGCY 1 cut(s) 741
BfuAI ACCTGC 1 cut(s) 782
BfuI GTATCC 1 cut(s) 369
BisI GCNGC 8 cut(s) 83, 92, 186, 249, 624, 657, 741, 780
BlsI GCNGC 8 cut(s) 84, 93, 187, 250, 625, 658, 742, 781
Bme1390I CCNGG 5 cut(s) 106, 319, 600, 726, 891
Bme18I GGWCC 3 cut(s) 309, 722, 842
BmgT120I GGNCC 4 cut(s) 309, 650, 722, 842
BmrFI CCNGG 5 cut(s) 106, 319, 600, 726, 891
BmrI ACTGGG 2 cut(s) 211, 477
BmsI GCATC 3 cut(s) 244, 502, 988
BmuI ACTGGG 2 cut(s) 211, 477
BpiI GAAGAC 1 cut(s) 156
BpmI CTGGAG 1 cut(s) 702
Bpu10I CCTNAGC 1 cut(s) 643
BpuMI CCSGG 1 cut(s) 106
BsaJI CCNNGG 3 cut(s) 210, 317, 318
Bsc4I CCNNNNNNNGG 4 cut(s) 318, 451, 659, 851
Bse1I ACTGG 5 cut(s) 206, 242, 472, 916, 1042
Bse3DI GCAATG 2 cut(s) 154, 862
BseBI CCWGG 4 cut(s) 319, 600, 726, 891
BseDI CCNNGG 3 cut(s) 210, 317, 318
BseGI GGATG 1 cut(s) 1048
BseLI CCNNNNNNNGG 4 cut(s) 318, 451, 659, 851
BseMI GCAATG 2 cut(s) 154, 862
BseMII CTCAG 1 cut(s) 546
BseNI ACTGG 5 cut(s) 206, 242, 472, 916, 1042
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 7 cut(s) 103, 172, 235, 610, 668, 727, 766
BshFI GGCC 3 cut(s) 209, 598, 651
BsiHKAI GWGCWC 1 cut(s) 907
BsiSI CCGG 1 cut(s) 105
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 4 cut(s) 318, 451, 659, 851
BsmFI GGGAC 1 cut(s) 204
BsnI GGCC 3 cut(s) 209, 598, 651
Bsp1286I GDGCHC 1 cut(s) 907
Bsp143I GATC 3 cut(s) 238, 344, 457
BspACI CCGC 6 cut(s) 83, 188, 720, 840, 872, 1023
BspANI GGCC 3 cut(s) 209, 598, 651
BspCNI CTCAG 1 cut(s) 545
BspMAI CTGCAG 1 cut(s) 658
BspMI ACCTGC 1 cut(s) 782
BspPI GGATC 2 cut(s) 233, 352
BsrBI CCGCTC 2 cut(s) 872, 1023
BsrDI GCAATG 2 cut(s) 154, 862
BsrI ACTGG 5 cut(s) 206, 242, 472, 916, 1042
BssECI CCNNGG 3 cut(s) 210, 317, 318
BssMI GATC 3 cut(s) 238, 344, 457
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 4 cut(s) 319, 600, 726, 891
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 887
BstDEI CTNAG 2 cut(s) 532, 643
BstF5I GGATG 1 cut(s) 1048
BstH2I RGCGCY 1 cut(s) 741
BstHHI GCGC 1 cut(s) 740
BstKTI GATC 3 cut(s) 241, 347, 460
BstMBI GATC 3 cut(s) 238, 344, 457
BstMWI GCNNNNNNNGC 6 cut(s) 88, 91, 182, 254, 648, 788
BstNI CCWGG 4 cut(s) 319, 600, 726, 891
BstNSI RCATGY 2 cut(s) 278, 889
BstSCI CCNGG 5 cut(s) 104, 317, 598, 724, 889
BstSFI CTRYAG 1 cut(s) 654
BstV1I GCAGC 7 cut(s) 103, 172, 235, 610, 668, 727, 766
BstV2I GAAGAC 1 cut(s) 156
BsuI GTATCC 1 cut(s) 369
BsuRI GGCC 3 cut(s) 209, 598, 651
BtsCI GGATG 1 cut(s) 1048
BtsIMutI CAGTG 1 cut(s) 249
BveI ACCTGC 1 cut(s) 782
Cac8I GCNNGC 1 cut(s) 887
CaiI CAGNNNCTG 1 cut(s) 248
CfoI GCGC 1 cut(s) 740
Cfr13I GGNCC 4 cut(s) 309, 650, 722, 842
CsiI ACCWGGT 1 cut(s) 724
CviAII CATG 3 cut(s) 275, 548, 886
DdeI CTNAG 2 cut(s) 532, 643
DpnI GATC 3 cut(s) 240, 346, 459
DpnII GATC 3 cut(s) 238, 344, 457
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
EciI GGCGGA 2 cut(s) 735, 855
Eco130I CCWWGG 1 cut(s) 210
Eco147I AGGCCT 1 cut(s) 598
Eco32I GATATC 1 cut(s) 1046
Eco47I GGWCC 3 cut(s) 309, 722, 842
EcoRII CCWGG 4 cut(s) 317, 598, 724, 889
EcoRV GATATC 1 cut(s) 1046
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 3 cut(s) 278, 551, 889
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FaqI GGGAC 1 cut(s) 204
FatI CATG 3 cut(s) 274, 547, 885
FauI CCCGC 2 cut(s) 181, 865
Fnu4HI GCNGC 8 cut(s) 83, 92, 186, 249, 624, 657, 741, 780
FokI GGATG 1 cut(s) 1035
Fsp4HI GCNGC 8 cut(s) 83, 92, 186, 249, 624, 657, 741, 780
FspBI CTAG 1 cut(s) 477
GlaI GCGC 1 cut(s) 739
GluI GCNGC 8 cut(s) 83, 92, 186, 249, 624, 657, 741, 780
GsuI CTGGAG 1 cut(s) 702
HaeII RGCGCY 1 cut(s) 741
HaeIII GGCC 3 cut(s) 209, 598, 651
HapII CCGG 1 cut(s) 105
HhaI GCGC 1 cut(s) 740
Hin1II CATG 3 cut(s) 278, 551, 889
Hin6I GCGC 1 cut(s) 738
HinP1I GCGC 1 cut(s) 738
HinfI GANTC 5 cut(s) 101, 161, 179, 222, 1028
HpaII CCGG 1 cut(s) 105
HphI GGTGA 4 cut(s) 313, 419, 617, 1037
Hpy188I TCNGA 3 cut(s) 16, 238, 535
Hpy188III TCNNGA 4 cut(s) 74, 477, 518, 681
HpyAV CCTTC 2 cut(s) 137, 530
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 2 cut(s) 132, 383
HpyCH4V TGCA 4 cut(s) 257, 626, 656, 791
HpyF10VI GCNNNNNNNGC 6 cut(s) 88, 91, 182, 254, 648, 788
HpyF3I CTNAG 2 cut(s) 532, 643
HpySE526I ACGT 2 cut(s) 132, 383
Hsp92II CATG 3 cut(s) 278, 551, 889
HspAI GCGC 1 cut(s) 738
Kzo9I GATC 3 cut(s) 238, 344, 457
LmnI GCTCC 3 cut(s) 869, 910, 1020
Lsp1109I GCAGC 7 cut(s) 103, 172, 235, 610, 668, 727, 766
LweI GCATC 3 cut(s) 244, 502, 988
MabI ACCWGGT 1 cut(s) 724
MaeI CTAG 1 cut(s) 477
MaeII ACGT 2 cut(s) 132, 383
MaeIII GTNAC 2 cut(s) 226, 493
MalI GATC 3 cut(s) 240, 346, 459
MbiI CCGCTC 2 cut(s) 872, 1023
MboI GATC 3 cut(s) 238, 344, 457
MboII GAAGA 7 cut(s) 17, 156, 281, 316, 370, 521, 1053
MhlI GDGCHC 1 cut(s) 907
MluCI AATT 8 cut(s) 68, 95, 401, 676, 751, 760, 772, 1060
MlyI GAGTC 1 cut(s) 170
MroXI GAANNNNTTC 2 cut(s) 69, 943
MseI TTAA 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 659
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 5 cut(s) 106, 319, 600, 726, 891
MvaI CCWGG 4 cut(s) 319, 600, 726, 891
MwoI GCNNNNNNNGC 6 cut(s) 88, 91, 182, 254, 648, 788
NciI CCSGG 1 cut(s) 106
NdeII GATC 3 cut(s) 238, 344, 457
NlaIII CATG 3 cut(s) 278, 551, 889
NmuCI GTSAC 1 cut(s) 493
NspI RCATGY 2 cut(s) 278, 889
PaeI GCATGC 1 cut(s) 889
PasI CCCWGGG 1 cut(s) 318
PceI AGGCCT 1 cut(s) 598
PciI ACATGT 1 cut(s) 274
PdmI GAANNNNTTC 2 cut(s) 69, 943
PfeI GAWTC 4 cut(s) 101, 179, 222, 1028
PflMI CCANNNNNTGG 1 cut(s) 451
PkrI GCNGC 8 cut(s) 84, 93, 187, 250, 625, 658, 742, 781
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
PscI ACATGT 1 cut(s) 274
Psp6I CCWGG 4 cut(s) 317, 598, 724, 889
PspGI CCWGG 4 cut(s) 317, 598, 724, 889
PspPI GGNCC 4 cut(s) 309, 650, 722, 842
PstI CTGCAG 1 cut(s) 658
PstNI CAGNNNCTG 1 cut(s) 248
PvuII CAGCTG 1 cut(s) 659
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 8 cut(s) 83, 92, 186, 249, 624, 657, 741, 780
Sau3AI GATC 3 cut(s) 238, 344, 457
Sau96I GGNCC 4 cut(s) 309, 650, 722, 842
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 5 cut(s) 106, 319, 600, 726, 891
SduI GDGCHC 1 cut(s) 907
SexAI ACCWGGT 1 cut(s) 724
SfaNI GCATC 3 cut(s) 244, 502, 988
SfcI CTRYAG 1 cut(s) 654
SinI GGWCC 3 cut(s) 309, 722, 842
SphI GCATGC 1 cut(s) 889
Sse9I AATT 8 cut(s) 68, 95, 401, 676, 751, 760, 772, 1060
SseBI AGGCCT 1 cut(s) 598
SsiI CCGC 6 cut(s) 83, 188, 720, 840, 872, 1023
SspI AATATT 1 cut(s) 413
SspMI CTAG 1 cut(s) 477
StuI AGGCCT 1 cut(s) 598
StyD4I CCNGG 5 cut(s) 104, 317, 598, 724, 889
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 2 cut(s) 135, 386
TaqI TCGA 1 cut(s) 99
TasI AATT 8 cut(s) 68, 95, 401, 676, 751, 760, 772, 1060
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 4 cut(s) 101, 179, 222, 1028
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 1 cut(s) 493
TseI GCWGC 7 cut(s) 91, 185, 248, 623, 656, 740, 779
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 3 cut(s) 156, 522, 564
TspGWI ACGGA 1 cut(s) 711
TspRI CASTG 1 cut(s) 249
Van91I CCANNNNNTGG 1 cut(s) 451
VpaK11BI GGWCC 3 cut(s) 309, 722, 842
XbaI TCTAGA 1 cut(s) 476
XceI RCATGY 2 cut(s) 278, 889
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
XmnI GAANNNNTTC 2 cut(s) 69, 943
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.