pycom07g10230

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0012129
Physical Location & Seq
Reverse (-)
10062394 .. 10063090
697 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g10230.2

Sequence Viewer

Length: 609 bp
ATGCTAGATCATAACACCGGGAGGTCTAGAGGATTTGGGTTTGTCACTTTTGAGAACGAAGATGCTCTTGACAAGATATTTTCTGAGGGAAAAATACATGAACTTGGAGGCAAACAGGTGGAAATTAAGAAGGCTGAACCTAAAAGGGGTGGTGGCAATTTCAGTGGCAGTGCTGCCAAGTCATATGGTGACCTAGGTGGTGCTGCAGCTGGTTATGGTGCATATAATTCTGGAAGTCGGCACAATGGAAAAATTGGCATGGGATTTGGTGGGGTTGGGTATGGCCCTTACTGTGGCTACAACAATTACGGTGGAAATTATGCTGGAGTTTATGCAGGTTTCTACGGGGGCTATGGTGGAAATTATGGTGGATATGGATATGGATTCGGTTGTGGTGGACCCATGTATGGCAATGCTGGATATCCAGCCGGTGGTTATGGCATGCCTGGTGGTTATGGTGGCAATACTGCCTATGCGGGTGGTAAAGGGTATGGAACTGGTGCTGCTGGTTGTGGTGTTAATAGTGGTGGAGGCAGTTATGGTTCTGGTAGAGGATACGATAGGAGTGGTGGTTCTACGATAGGAAGATATCATCCATATCAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 ko03040 map03015 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

203

Amino Acids

20.27

Weight (kDa)

8.94

Isoelectric Point (pI)

23.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17640 AT1G17640 AT1G17640
fragaria_vesca FvH4_6g33670
malus_domestica MD09G1191800.v1.1
prunus_persica Prupe.3G048000_v2.0.a1
pyrus_communis pycom07g10230 pycom09g10830
rosa_chinensis RchiOBHm_Chr2g0143581
rosa_laevigata RLG00000020048
rosa_multiflora Rmu_ssc0000231.1_g000013
rosa_roxburghii Rroxscaffold_2G00101640
rosa_rugosa Rorug02G0384000 Rorug02G0384000
rosa_samantha Rh2AG435900 Rh2BG443500 Rh2CG422000 Rh2DG453900
rosa_wichuraiana Rw2G035520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 326
AccB7I CCANNNNNTGG 1 cut(s) 431
AciI CCGC 1 cut(s) 476
AfiI CCNNNNNNNGG 4 cut(s) 146, 293, 407, 431
AjnI CCWGG 1 cut(s) 445
AloI GAACNNNNNNTCC 2 cut(s) 556, 588
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 4 cut(s) 173, 203, 206, 503
AspA2I CCTAGG 1 cut(s) 193
AspS9I GGNCC 2 cut(s) 284, 398
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 200
AvaII GGWCC 1 cut(s) 398
AvrII CCTAGG 1 cut(s) 193
BbvI GCAGC 4 cut(s) 160, 190, 218, 490
BciT130I CCWGG 1 cut(s) 447
BciVI GTATCC 1 cut(s) 548
BcnI CCSGG 1 cut(s) 19
BfaI CTAG 3 cut(s) 5, 27, 194
BfmI CTRYAG 1 cut(s) 204
BfuAI ACCTGC 1 cut(s) 326
BfuI GTATCC 1 cut(s) 548
BisI GCNGC 4 cut(s) 174, 204, 207, 504
BlnI CCTAGG 1 cut(s) 193
BlsI GCNGC 4 cut(s) 175, 205, 208, 505
Bme1390I CCNGG 2 cut(s) 19, 447
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 2 cut(s) 284, 398
BmiI GGNNCC 1 cut(s) 400
BmrFI CCNGG 2 cut(s) 19, 447
BmsI GCATC 1 cut(s) 52
BpmI CTGGAG 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 556, 586
Bsc4I CCNNNNNNNGG 4 cut(s) 146, 293, 407, 431
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 1 cut(s) 502
Bse3DI GCAATG 1 cut(s) 418
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 592
BseLI CCNNNNNNNGG 4 cut(s) 146, 293, 407, 431
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 502
BseXI GCAGC 4 cut(s) 160, 190, 218, 490
BshFI GGCC 1 cut(s) 285
BsiSI CCGG 2 cut(s) 18, 429
BslI CCNNNNNNNGG 4 cut(s) 146, 293, 407, 431
BsnI GGCC 1 cut(s) 285
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 1 cut(s) 476
BspANI GGCC 1 cut(s) 285
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 400
BspMAI CTGCAG 1 cut(s) 208
BspMI ACCTGC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 418
BsrFI RCCGGY 1 cut(s) 428
BsrI ACTGG 1 cut(s) 502
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 1 cut(s) 7
BssT1I CCWWGG 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 2 cut(s) 293, 311
BstC8I GCNNGC 1 cut(s) 443
BstDEI CTNAG 1 cut(s) 84
BstEII GGTNACC 1 cut(s) 188
BstF5I GGATG 1 cut(s) 592
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstNI CCWGG 1 cut(s) 447
BstNSI RCATGY 1 cut(s) 445
BstPI GGTNACC 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 17, 445
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 4 cut(s) 160, 190, 218, 490
BsuI GTATCC 1 cut(s) 548
BsuRI GGCC 1 cut(s) 285
BtsCI GGATG 1 cut(s) 592
BtsI GCAGTG 1 cut(s) 175
BtsIMutI CAGTG 2 cut(s) 169, 175
BveI ACCTGC 1 cut(s) 326
Cac8I GCNNGC 1 cut(s) 443
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 2 cut(s) 284, 398
CspCI CAANNNNNGTGG 4 cut(s) 145, 180, 292, 327
CviAII CATG 4 cut(s) 98, 259, 403, 442
CviJI RGCY 6 cut(s) 134, 209, 285, 297, 351, 428
CviKI_1 RGCY 6 cut(s) 134, 209, 285, 297, 351, 428
DdeI CTNAG 1 cut(s) 84
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 193
Eco32I GATATC 2 cut(s) 422, 590
Eco47I GGWCC 1 cut(s) 398
Eco91I GGTNACC 1 cut(s) 188
EcoO65I GGTNACC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 445
EcoRV GATATC 2 cut(s) 422, 590
EcoT14I CCWWGG 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 4 cut(s) 101, 262, 406, 445
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FatI CATG 4 cut(s) 97, 258, 402, 441
FauI CCCGC 1 cut(s) 469
FauNDI CATATG 1 cut(s) 184
Fnu4HI GCNGC 4 cut(s) 174, 204, 207, 504
FokI GGATG 1 cut(s) 579
Fsp4HI GCNGC 4 cut(s) 174, 204, 207, 504
FspBI CTAG 3 cut(s) 5, 27, 194
GluI GCNGC 4 cut(s) 174, 204, 207, 504
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 1 cut(s) 285
HapII CCGG 2 cut(s) 18, 429
Hin1II CATG 4 cut(s) 101, 262, 406, 445
HinfI GANTC 1 cut(s) 384
HpaII CCGG 2 cut(s) 18, 429
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 398
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 3 cut(s) 27, 68, 231
Hpy8I GTNNAC 1 cut(s) 398
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 2 cut(s) 293, 311
HpyCH4V TGCA 3 cut(s) 206, 221, 335
HpyF3I CTNAG 1 cut(s) 84
Hsp92II CATG 4 cut(s) 101, 262, 406, 445
Kzo9I GATC 1 cut(s) 7
Lsp1109I GCAGC 4 cut(s) 160, 190, 218, 490
LweI GCATC 1 cut(s) 52
MaeI CTAG 3 cut(s) 5, 27, 194
MaeIII GTNAC 2 cut(s) 43, 188
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 2 cut(s) 71, 597
MluCI AATT 8 cut(s) 123, 157, 226, 252, 304, 316, 361, 604
MnlI CCTC 6 cut(s) 15, 23, 79, 101, 524, 545
MseI TTAA 2 cut(s) 126, 519
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 2 cut(s) 18, 429
MspR9I CCNGG 2 cut(s) 19, 447
MvaI CCWGG 1 cut(s) 447
NciI CCSGG 1 cut(s) 19
NdeI CATATG 1 cut(s) 184
NdeII GATC 1 cut(s) 7
NlaIII CATG 4 cut(s) 101, 262, 406, 445
NlaIV GGNNCC 1 cut(s) 400
NmuCI GTSAC 2 cut(s) 43, 188
NspI RCATGY 1 cut(s) 445
PaeI GCATGC 1 cut(s) 445
PfeI GAWTC 1 cut(s) 384
PflMI CCANNNNNTGG 1 cut(s) 431
PkrI GCNGC 4 cut(s) 175, 205, 208, 505
Psp6I CCWGG 1 cut(s) 445
PspEI GGTNACC 1 cut(s) 188
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 1 cut(s) 400
PspPI GGNCC 2 cut(s) 284, 398
PstI CTGCAG 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 209
SaqAI TTAA 2 cut(s) 126, 519
SatI GCNGC 4 cut(s) 174, 204, 207, 504
Sau3AI GATC 1 cut(s) 7
Sau96I GGNCC 2 cut(s) 284, 398
ScrFI CCNGG 2 cut(s) 19, 447
SetI ASST 7 cut(s) 26, 120, 142, 195, 199, 211, 340
SfaNI GCATC 1 cut(s) 52
SfcI CTRYAG 1 cut(s) 204
SinI GGWCC 1 cut(s) 398
SphI GCATGC 1 cut(s) 445
Sse9I AATT 8 cut(s) 123, 157, 226, 252, 304, 316, 361, 604
SsiI CCGC 1 cut(s) 476
SspMI CTAG 3 cut(s) 5, 27, 194
StyD4I CCNGG 2 cut(s) 17, 445
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 2 cut(s) 293, 311
TasI AATT 8 cut(s) 123, 157, 226, 252, 304, 316, 361, 604
TfiI GAWTC 1 cut(s) 384
Tru1I TTAA 2 cut(s) 126, 519
Tru9I TTAA 2 cut(s) 126, 519
TscAI CASTG 2 cut(s) 169, 175
TseFI GTSAC 2 cut(s) 43, 188
TseI GCWGC 4 cut(s) 173, 203, 206, 503
Tsp45I GTSAC 2 cut(s) 43, 188
TspDTI ATGAA 1 cut(s) 114
TspRI CASTG 2 cut(s) 169, 175
Van91I CCANNNNNTGG 1 cut(s) 431
VpaK11BI GGWCC 1 cut(s) 398
XbaI TCTAGA 1 cut(s) 26
XceI RCATGY 1 cut(s) 445
XmaJI CCTAGG 1 cut(s) 193
XspI CTAG 3 cut(s) 5, 27, 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.