pycom09g10830

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0012129
Physical Location & Seq
Forward (+)
8898944 .. 8901463
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g10830.1

Sequence Viewer

Length: 1191 bp
ATGGAAGATTACCCCGAACGCAGTCGTTTCGACGACGACCAAATCGCGTACAATGGAAACGAAGAATTTGAGCAACCGCCAGAGCAGGAATTTGAAGAATTTGAGCAGCAGCGGGAGCAACAATCGAACCATAACTTAGATAATGAAGGCAATGAGTTTAGGGATTCGTTCAGTCATCGCGATTCAGCTGCGGGAAAACTATTTGTAGGAGGCGTTTCTTGGGAGACTACTGAAGAGAACTTTTCTAATTACTTCAGCAAGTATGGAGAAATAGTTGATTCTGTTATAATGATCGACAAACATACTGGGAAGCCAAGGGGATTTGGTTTTGTGACATTTTCTGATCCAATGGTTATTGATTCAGTATTGGAAGTAGAACATGTCATAGATGGCAGAGTGGTAGAGGTGAAGAGGACAGTCCCCAGGGAGGATATAGGGTTTAAGGGGGCATCGAAAAGAAAGAAGATTTTTGTTGGTGGAATACCAACGTCTTTGACCGATGATGAGTTGGGGGAATATTTCTCTGCATATGGCACCATTGTTGAGCACCAGATTATGCTAGATCATAAAACCGGGAGGTCTAGAGGATTTGGGTTTGTCACTTTTGAGAATGAAGATGCTCTTGACAAGATATTTTCTGATGGAAAAGTACATGAACTTGGAGGCAAACAGGTAGAGATTAAGAAGGCTGAACCTAAAAGGGGTGGTGGCGATTTCAGTGGCAGCTCTGCCAGGTCATATGGTAGCTTAAGTGGTGCTGCAGCTGGTTATGGTGCATATAATTCTGGAAGTCGGCACAACGGAAAAATGGGCAGGGGATTTGGTGGGGGTGGGTATGGCCCTTATGGTGCCTACAACAATTACGGTGGAAATTATGCTGGAGGCTATGCAGGTTTCTATGGGGGCTATGGTGGAAATTATGGTGGATATGGATATGGATTTGGGTACGGTGGGCCCATGTATGGCAATGCTGGATATCCAGCCAGTGGTTATGGCATGCCTGCTGGTTATGGTGGCAATACTGCCTATGCAGGTAGTAAAGGGTATGGAAGTGGTGCTGCTGGTCGTGGTGGCCGTGGTGGTAGTAGGGGCGGTGGCAGTTATGGTTCTAGTGGAGGATATGATAGGAGTGATGGAAATGATAGGAGTGGTGGTTCTTCAACTGGAAGATATCATCCATATCAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 ko03040 map03015 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

397

Amino Acids

42.44

Weight (kDa)

5.4

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 67 - 124 1.8e-13 RNA recognition motif
RRM_7 PF16367 154 - 216 2e-06 RNA recognition motif
RRM_1 PF00076 156 - 223 1.5e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17640 AT1G17640 AT1G17640
fragaria_vesca FvH4_6g33670
malus_domestica MD09G1191800.v1.1
prunus_persica Prupe.3G048000_v2.0.a1
pyrus_communis pycom07g10230 pycom09g10830
rosa_chinensis RchiOBHm_Chr2g0143581
rosa_laevigata RLG00000020048
rosa_multiflora Rmu_ssc0000231.1_g000013
rosa_roxburghii Rroxscaffold_2G00101640
rosa_rugosa Rorug02G0384000 Rorug02G0384000
rosa_samantha Rh2AG435900 Rh2BG443500 Rh2CG422000 Rh2DG453900
rosa_wichuraiana Rw2G035520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 287
Acc36I ACCTGC 2 cut(s) 881, 1022
AccB1I GGYRCC 2 cut(s) 533, 848
AccB7I CCANNNNNTGG 1 cut(s) 986
AccII CGCG 2 cut(s) 47, 180
AciI CCGC 4 cut(s) 77, 112, 191, 1092
AclWI GGATC 1 cut(s) 338
AcoI YGGCCR 1 cut(s) 1072
AcsI RAATTY 3 cut(s) 65, 89, 98
AcuI CTGAAG 2 cut(s) 238, 252
AfaI GTAC 3 cut(s) 50, 651, 947
AfiI CCNNNNNNNGG 4 cut(s) 427, 701, 962, 986
AflII CTTAAG 1 cut(s) 748
AflIII ACRYGT 1 cut(s) 379
AgsI TTSAA 2 cut(s) 95, 1161
AjnI CCWGG 2 cut(s) 422, 731
AloI GAACNNNNNNTCC 2 cut(s) 1138, 1170
AluBI AGCT 4 cut(s) 188, 726, 747, 764
AluI AGCT 4 cut(s) 188, 726, 747, 764
Alw21I GWGCWC 1 cut(s) 549
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 1 cut(s) 338
AoxI GGCC 3 cut(s) 838, 953, 1072
ApaI GGGCCC 1 cut(s) 957
ApeKI GCWGC 7 cut(s) 106, 109, 188, 723, 758, 761, 1058
ApoI RAATTY 3 cut(s) 65, 89, 98
AspS9I GGNCC 3 cut(s) 839, 953, 954
AsuC2I CCSGG 1 cut(s) 574
AsuHPI GGTGA 1 cut(s) 418
BaeGI GKGCMC 1 cut(s) 957
BanI GGYRCC 2 cut(s) 533, 848
BanII GRGCYC 1 cut(s) 957
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 7 cut(s) 118, 121, 175, 735, 745, 773, 1045
BccI CCATC 3 cut(s) 383, 635, 1127
BceAI ACGGC 1 cut(s) 1059
BcgI CGANNNNNNTGC 4 cut(s) 10, 44, 170, 204
BciT130I CCWGG 2 cut(s) 424, 733
BcnI CCSGG 1 cut(s) 574
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 3 cut(s) 560, 582, 1110
BfmI CTRYAG 1 cut(s) 759
BfrI CTTAAG 1 cut(s) 748
BfuAI ACCTGC 2 cut(s) 881, 1022
BisI GCNGC 7 cut(s) 107, 110, 189, 724, 759, 762, 1059
BlsI GCNGC 7 cut(s) 108, 111, 190, 725, 760, 763, 1060
Bme1390I CCNGG 3 cut(s) 424, 574, 733
BmgT120I GGNCC 3 cut(s) 839, 953, 954
BmiI GGNNCC 3 cut(s) 535, 850, 955
BmrFI CCNGG 3 cut(s) 424, 574, 733
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 2 cut(s) 458, 607
BmuI ACTGGG 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 900
BpuMI CCSGG 1 cut(s) 574
BsaJI CCNNGG 4 cut(s) 314, 422, 423, 1075
BsaXI ACNNNNNCTCC 4 cut(s) 258, 288, 1138, 1168
Bsc4I CCNNNNNNNGG 4 cut(s) 427, 701, 962, 986
Bse1I ACTGG 3 cut(s) 310, 984, 1168
Bse3DI GCAATG 2 cut(s) 157, 973
BseBI CCWGG 2 cut(s) 424, 733
BseDI CCNNGG 4 cut(s) 314, 422, 423, 1075
BseGI GGATG 1 cut(s) 1174
BseLI CCNNNNNNNGG 4 cut(s) 427, 701, 962, 986
BseMI GCAATG 2 cut(s) 157, 973
BseNI ACTGG 3 cut(s) 310, 984, 1168
BseSI GKGCMC 1 cut(s) 957
BseXI GCAGC 7 cut(s) 118, 121, 175, 735, 745, 773, 1045
Bsh1236I CGCG 2 cut(s) 47, 180
BshFI GGCC 3 cut(s) 840, 955, 1074
BshNI GGYRCC 2 cut(s) 533, 848
BsiHKAI GWGCWC 1 cut(s) 549
BsiSI CCGG 1 cut(s) 573
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 4 cut(s) 427, 701, 962, 986
BsmAI GTCTC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 3 cut(s) 840, 955, 1074
Bsp120I GGGCCC 1 cut(s) 953
Bsp1286I GDGCHC 2 cut(s) 549, 957
Bsp143I GATC 3 cut(s) 291, 343, 562
Bsp68I TCGCGA 1 cut(s) 180
BspACI CCGC 4 cut(s) 77, 112, 191, 1092
BspANI GGCC 3 cut(s) 840, 955, 1074
BspFNI CGCG 2 cut(s) 47, 180
BspLI GGNNCC 3 cut(s) 535, 850, 955
BspMAI CTGCAG 1 cut(s) 763
BspMI ACCTGC 2 cut(s) 881, 1022
BspPI GGATC 1 cut(s) 338
BspT107I GGYRCC 2 cut(s) 533, 848
BspTI CTTAAG 1 cut(s) 748
BsrDI GCAATG 2 cut(s) 157, 973
BsrI ACTGG 3 cut(s) 310, 984, 1168
BssECI CCNNGG 4 cut(s) 314, 422, 423, 1075
BssMI GATC 3 cut(s) 291, 343, 562
BssT1I CCWWGG 1 cut(s) 314
Bst2UI CCWGG 2 cut(s) 424, 733
Bst4CI ACNGT 3 cut(s) 418, 866, 950
Bst6I CTCTTC 2 cut(s) 228, 404
BstAFI CTTAAG 1 cut(s) 748
BstC8I GCNNGC 2 cut(s) 998, 1002
BstDEI CTNAG 1 cut(s) 136
BstDSI CCRYGG 1 cut(s) 1075
BstF5I GGATG 1 cut(s) 1174
BstFNI CGCG 2 cut(s) 47, 180
BstKTI GATC 3 cut(s) 294, 346, 565
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 3 cut(s) 291, 343, 562
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstNI CCWGG 2 cut(s) 424, 733
BstNSI RCATGY 2 cut(s) 383, 1000
BstSCI CCNGG 3 cut(s) 422, 572, 731
BstSFI CTRYAG 1 cut(s) 759
BstSLI GKGCMC 1 cut(s) 957
BstUI CGCG 2 cut(s) 47, 180
BstV1I GCAGC 7 cut(s) 118, 121, 175, 735, 745, 773, 1045
BsuRI GGCC 3 cut(s) 840, 955, 1074
BtgI CCRYGG 1 cut(s) 1075
BtgZI GCGATG 1 cut(s) 161
BtsCI GGATG 1 cut(s) 1174
BtsIMutI CAGTG 2 cut(s) 724, 991
BtuMI TCGCGA 1 cut(s) 180
BveI ACCTGC 2 cut(s) 881, 1022
Cac8I GCNNGC 2 cut(s) 998, 1002
Cfr13I GGNCC 3 cut(s) 839, 953, 954
Csp6I GTAC 3 cut(s) 49, 650, 946
CspCI CAANNNNNGTGG 2 cut(s) 847, 882
CviAII CATG 4 cut(s) 380, 653, 958, 997
CviQI GTAC 3 cut(s) 49, 650, 946
DdeI CTNAG 1 cut(s) 136
DpnI GATC 3 cut(s) 293, 345, 564
DpnII GATC 3 cut(s) 291, 343, 562
EaeI YGGCCR 1 cut(s) 1072
Eam1104I CTCTTC 2 cut(s) 228, 404
EarI CTCTTC 2 cut(s) 228, 404
Eco130I CCWWGG 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 957
Eco32I GATATC 2 cut(s) 977, 1172
Eco57I CTGAAG 2 cut(s) 238, 252
EcoRII CCWGG 2 cut(s) 422, 731
EcoRV GATATC 2 cut(s) 977, 1172
EcoT14I CCWWGG 1 cut(s) 314
EcoT38I GRGCYC 1 cut(s) 957
ErhI CCWWGG 1 cut(s) 314
FaeI CATG 4 cut(s) 383, 656, 961, 1000
FalI AAGNNNNNCTT 2 cut(s) 606, 638
FaqI GGGAC 1 cut(s) 404
FatI CATG 4 cut(s) 379, 652, 957, 996
FauI CCCGC 2 cut(s) 105, 184
FauNDI CATATG 2 cut(s) 529, 739
Fnu4HI GCNGC 7 cut(s) 107, 110, 189, 724, 759, 762, 1059
FokI GGATG 1 cut(s) 1161
FriOI GRGCYC 1 cut(s) 957
Fsp4HI GCNGC 7 cut(s) 107, 110, 189, 724, 759, 762, 1059
FspBI CTAG 3 cut(s) 560, 582, 1110
GluI GCNGC 7 cut(s) 107, 110, 189, 724, 759, 762, 1059
GsuI CTGGAG 1 cut(s) 900
HaeIII GGCC 3 cut(s) 840, 955, 1074
HapII CCGG 1 cut(s) 573
Hin1II CATG 4 cut(s) 383, 656, 961, 1000
HinfI GANTC 4 cut(s) 164, 182, 278, 359
HpaII CCGG 1 cut(s) 573
HphI GGTGA 1 cut(s) 418
Hpy188I TCNGA 2 cut(s) 343, 640
Hpy188III TCNNGA 4 cut(s) 179, 582, 623, 786
Hpy99I CGWCG 2 cut(s) 35, 38
HpyAV CCTTC 2 cut(s) 140, 679
HpyCH4III ACNGT 3 cut(s) 418, 866, 950
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 5 cut(s) 527, 761, 776, 890, 1031
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
HpyF3I CTNAG 1 cut(s) 136
HpySE526I ACGT 1 cut(s) 488
Hsp92II CATG 4 cut(s) 383, 656, 961, 1000
Kzo9I GATC 3 cut(s) 291, 343, 562
LmnI GCTCC 1 cut(s) 115
Lsp1109I GCAGC 7 cut(s) 118, 121, 175, 735, 745, 773, 1045
LweI GCATC 2 cut(s) 458, 607
MaeI CTAG 3 cut(s) 560, 582, 1110
MaeII ACGT 1 cut(s) 488
MaeIII GTNAC 2 cut(s) 331, 598
MalI GATC 3 cut(s) 293, 345, 564
MboI GATC 3 cut(s) 291, 343, 562
MboII GAAGA 9 cut(s) 17, 74, 107, 245, 421, 475, 626, 1149, 1179
MhlI GDGCHC 2 cut(s) 549, 957
MluCI AATT 8 cut(s) 65, 89, 98, 247, 781, 859, 871, 916
MnlI CCTC 9 cut(s) 203, 397, 405, 421, 570, 578, 656, 875, 1109
MseI TTAA 3 cut(s) 441, 681, 749
MspA1I CMGCKG 3 cut(s) 112, 188, 764
MspCI CTTAAG 1 cut(s) 748
MspI CCGG 1 cut(s) 573
MspR9I CCNGG 3 cut(s) 424, 574, 733
MvaI CCWGG 2 cut(s) 424, 733
MvnI CGCG 2 cut(s) 47, 180
MwoI GCNNNNNNNGC 1 cut(s) 115
NciI CCSGG 1 cut(s) 574
NdeI CATATG 2 cut(s) 529, 739
NdeII GATC 3 cut(s) 291, 343, 562
NlaIII CATG 4 cut(s) 383, 656, 961, 1000
NlaIV GGNNCC 3 cut(s) 535, 850, 955
NmuCI GTSAC 2 cut(s) 331, 598
NruI TCGCGA 1 cut(s) 180
NspI RCATGY 2 cut(s) 383, 1000
PaeI GCATGC 1 cut(s) 1000
PasI CCCWGGG 1 cut(s) 423
PciI ACATGT 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 1072
PfeI GAWTC 4 cut(s) 164, 182, 278, 359
PflMI CCANNNNNTGG 1 cut(s) 986
PkrI GCNGC 7 cut(s) 108, 111, 190, 725, 760, 763, 1060
PscI ACATGT 1 cut(s) 379
PsiI TTATAA 1 cut(s) 287
Psp6I CCWGG 2 cut(s) 422, 731
PspGI CCWGG 2 cut(s) 422, 731
PspN4I GGNNCC 3 cut(s) 535, 850, 955
PspOMI GGGCCC 1 cut(s) 953
PspPI GGNCC 3 cut(s) 839, 953, 954
PstI CTGCAG 1 cut(s) 763
PvuII CAGCTG 2 cut(s) 188, 764
RruI TCGCGA 1 cut(s) 180
RsaI GTAC 3 cut(s) 50, 651, 947
RsaNI GTAC 3 cut(s) 49, 650, 946
SaqAI TTAA 3 cut(s) 441, 681, 749
SatI GCNGC 7 cut(s) 107, 110, 189, 724, 759, 762, 1059
Sau3AI GATC 3 cut(s) 291, 343, 562
Sau96I GGNCC 3 cut(s) 839, 953, 954
ScrFI CCNGG 3 cut(s) 424, 574, 733
SduI GDGCHC 2 cut(s) 549, 957
SfaNI GCATC 2 cut(s) 458, 607
SfcI CTRYAG 1 cut(s) 759
SmlI CTYRAG 1 cut(s) 748
SmoI CTYRAG 1 cut(s) 748
SphI GCATGC 1 cut(s) 1000
Sse9I AATT 8 cut(s) 65, 89, 98, 247, 781, 859, 871, 916
SsiI CCGC 4 cut(s) 77, 112, 191, 1092
SspI AATATT 1 cut(s) 518
SspMI CTAG 3 cut(s) 560, 582, 1110
StyD4I CCNGG 3 cut(s) 422, 572, 731
StyI CCWWGG 1 cut(s) 314
TaaI ACNGT 3 cut(s) 418, 866, 950
TaiI ACGT 1 cut(s) 491
TaqI TCGA 4 cut(s) 30, 125, 294, 452
TaqII GACCGA 1 cut(s) 512
TasI AATT 8 cut(s) 65, 89, 98, 247, 781, 859, 871, 916
TatI WGTACW 1 cut(s) 649
TfiI GAWTC 4 cut(s) 164, 182, 278, 359
Tru1I TTAA 3 cut(s) 441, 681, 749
Tru9I TTAA 3 cut(s) 441, 681, 749
TscAI CASTG 2 cut(s) 724, 991
TseFI GTSAC 2 cut(s) 331, 598
TseI GCWGC 7 cut(s) 106, 109, 188, 723, 758, 761, 1058
Tsp45I GTSAC 2 cut(s) 331, 598
TspDTI ATGAA 3 cut(s) 159, 627, 669
TspGWI ACGGA 1 cut(s) 816
TspRI CASTG 2 cut(s) 724, 991
Van91I CCANNNNNTGG 1 cut(s) 986
Vha464I CTTAAG 1 cut(s) 748
XapI RAATTY 3 cut(s) 65, 89, 98
XbaI TCTAGA 1 cut(s) 581
XceI RCATGY 2 cut(s) 383, 1000
XspI CTAG 3 cut(s) 560, 582, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.