MD09G1191800.v1.1

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0012129
Physical Location & Seq
Forward (+)
17027781 .. 17031101
3321 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1191800.v1.1.491

Sequence Viewer

Length: 1188 bp
ATGGAAGATTACCCCGAACGCAGTCGTTTCGACGACGACCAAATCGCGTACAATGGAAACGAAGAATTTGAGCAACCGCCAGAGCAGCAATTTGAAGAATTTGAGCAGCAGCGGGAGCAACAATCGAACCATAACTTAGATAATGAAGGCAATGAGTTTAGGGATTCGTTCAGTCATCGCGATTCAGCTGCGGGAAAACTATTTGTAGGAGGCGTTTCTTGGGAGACTACTGAAGAGAACTTTTCTAATTACTTCAGCAAGTATGGAGAAATAGTTGATTCTGTTATAATGATCGACAAACATACTGGGAAGCCAAGGGGATTTGGTTTTGTGACATTTTCTGATCCAATGGTTATTGATTCAGTGTTGGAAGTAGAACATGTCATAGATGGCAGAGTGGTAGAGGTGAAGAGGACAGTACCCAGGGGGGATGTAGGGTTTAAGGGGGCATCGAAAAGAAAGAAGATTTTTGTTGGTGGAATACCAACGTCTTTGACTGATGATGAGCTGGGGGAATATTTCTCTGCATATGGCACCATTGTTGAGCACCAGATTATGCTAGATCATAAAACCGGGAGGTCTAGAGGATTTGGGTTTGTCACTTTTGAGAATGAAGATGCTCTTGACAAGATATTTTCTGATGGAAAAGTACATGAACTTGGAGGCAAACAGGTAGAGATTAAGAAGGCTGAACCTAAAAGGGGTGGTGGCGATTTCAGTGGCAGTTCTGCCAGGTCGTATGGTAGCTTAAGTGGTGCTGCAGCTGGTTATGGTGCATATAATTCTGGAAGTCGGCACAATGGAAAAATGGGCAGGGGATTTGGTGGGGGTGGGGGTGGGTATGGCCCTTATGGTGCCTACAACAATTACGGTGGAAATTATGCTGGAGGTTATGCAGGTTTCTATGGGGGCTATGGTGGAAATTATGGTGGATATGGATATGGATTTGGGTACGGTGGGCCCATGTATGGCAATGCTGGATATCCAGCCAGTGGTTATGGCATGCCTGCTGGTTATGGTGGCAATACTGCCTATGCAGGTAGTAAAGGGTATGGAAGTGGTGCTGCTGGTCGTGGTGGTAGTAGGGGCGGTGGCAGTTATGGTTCCAGTGGAGGATATGATAGGAGTGATGGATATGATAGGAGTGGTGGTTCTTCTACTGGAAGATATCATCCATATCAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 ko03040 map03015 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

396

Amino Acids

42.24

Weight (kDa)

5.47

Isoelectric Point (pI)

33.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 67 - 124 1.8e-13 RNA recognition motif
RRM_7 PF16367 154 - 216 2e-06 RNA recognition motif
RRM_1 PF00076 156 - 223 1.5e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17640 AT1G17640 AT1G17640
fragaria_vesca FvH4_6g33670
malus_domestica MD09G1191800.v1.1
prunus_persica Prupe.3G048000_v2.0.a1
pyrus_communis pycom07g10230 pycom09g10830
rosa_chinensis RchiOBHm_Chr2g0143581
rosa_laevigata RLG00000020048
rosa_multiflora Rmu_ssc0000231.1_g000013
rosa_roxburghii Rroxscaffold_2G00101640
rosa_rugosa Rorug02G0384000 Rorug02G0384000
rosa_samantha Rh2AG435900 Rh2BG443500 Rh2CG422000 Rh2DG453900
rosa_wichuraiana Rw2G035520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 287
Acc36I ACCTGC 2 cut(s) 887, 1028
AccB1I GGYRCC 2 cut(s) 533, 854
AccB7I CCANNNNNTGG 1 cut(s) 992
AccII CGCG 2 cut(s) 47, 180
AciI CCGC 4 cut(s) 77, 112, 191, 1089
AclWI GGATC 1 cut(s) 338
AcsI RAATTY 2 cut(s) 65, 98
AcuI CTGAAG 2 cut(s) 238, 252
AfaI GTAC 4 cut(s) 50, 420, 651, 953
AfiI CCNNNNNNNGG 3 cut(s) 701, 968, 992
AflII CTTAAG 1 cut(s) 748
AflIII ACRYGT 1 cut(s) 379
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 2 cut(s) 422, 731
AloI GAACNNNNNNTCC 2 cut(s) 1135, 1167
AluBI AGCT 4 cut(s) 188, 508, 747, 764
AluI AGCT 4 cut(s) 188, 508, 747, 764
Alw21I GWGCWC 1 cut(s) 549
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 1 cut(s) 338
AoxI GGCC 2 cut(s) 844, 959
ApaI GGGCCC 1 cut(s) 963
ApeKI GCWGC 7 cut(s) 85, 106, 109, 188, 758, 761, 1064
ApoI RAATTY 2 cut(s) 65, 98
AspS9I GGNCC 3 cut(s) 845, 959, 960
AsuC2I CCSGG 1 cut(s) 574
AsuHPI GGTGA 1 cut(s) 418
BaeGI GKGCMC 1 cut(s) 963
BanI GGYRCC 2 cut(s) 533, 854
BanII GRGCYC 1 cut(s) 963
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 7 cut(s) 97, 118, 121, 175, 745, 773, 1051
BccI CCATC 3 cut(s) 383, 635, 1124
BcgI CGANNNNNNTGC 4 cut(s) 10, 44, 170, 204
BciT130I CCWGG 2 cut(s) 424, 733
BcnI CCSGG 1 cut(s) 574
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 2 cut(s) 560, 582
BfmI CTRYAG 1 cut(s) 759
BfrI CTTAAG 1 cut(s) 748
BfuAI ACCTGC 2 cut(s) 887, 1028
BisI GCNGC 7 cut(s) 86, 107, 110, 189, 759, 762, 1065
BlsI GCNGC 7 cut(s) 87, 108, 111, 190, 760, 763, 1066
Bme1390I CCNGG 3 cut(s) 424, 574, 733
BmgT120I GGNCC 3 cut(s) 845, 959, 960
BmiI GGNNCC 4 cut(s) 535, 856, 961, 1105
BmrFI CCNGG 3 cut(s) 424, 574, 733
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 2 cut(s) 458, 607
BmuI ACTGGG 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 906
BpuMI CCSGG 1 cut(s) 574
BsaJI CCNNGG 3 cut(s) 314, 422, 423
BsaXI ACNNNNNCTCC 4 cut(s) 258, 288, 1135, 1165
Bsc4I CCNNNNNNNGG 3 cut(s) 701, 968, 992
Bse1I ACTGG 4 cut(s) 310, 990, 1107, 1165
Bse3DI GCAATG 2 cut(s) 157, 979
BseBI CCWGG 2 cut(s) 424, 733
BseDI CCNNGG 3 cut(s) 314, 422, 423
BseGI GGATG 2 cut(s) 436, 1171
BseLI CCNNNNNNNGG 3 cut(s) 701, 968, 992
BseMI GCAATG 2 cut(s) 157, 979
BseNI ACTGG 4 cut(s) 310, 990, 1107, 1165
BseSI GKGCMC 1 cut(s) 963
BseXI GCAGC 7 cut(s) 97, 118, 121, 175, 745, 773, 1051
BseYI CCCAGC 1 cut(s) 508
Bsh1236I CGCG 2 cut(s) 47, 180
BshFI GGCC 2 cut(s) 846, 961
BshNI GGYRCC 2 cut(s) 533, 854
BsiHKAI GWGCWC 1 cut(s) 549
BsiSI CCGG 1 cut(s) 573
BslI CCNNNNNNNGG 3 cut(s) 701, 968, 992
BsmAI GTCTC 1 cut(s) 218
BsnI GGCC 2 cut(s) 846, 961
Bsp120I GGGCCC 1 cut(s) 959
Bsp1286I GDGCHC 2 cut(s) 549, 963
Bsp143I GATC 3 cut(s) 291, 343, 562
Bsp68I TCGCGA 1 cut(s) 180
BspACI CCGC 4 cut(s) 77, 112, 191, 1089
BspANI GGCC 2 cut(s) 846, 961
BspFNI CGCG 2 cut(s) 47, 180
BspLI GGNNCC 4 cut(s) 535, 856, 961, 1105
BspMAI CTGCAG 1 cut(s) 763
BspMI ACCTGC 2 cut(s) 887, 1028
BspPI GGATC 1 cut(s) 338
BspT107I GGYRCC 2 cut(s) 533, 854
BspTI CTTAAG 1 cut(s) 748
BsrDI GCAATG 2 cut(s) 157, 979
BsrI ACTGG 4 cut(s) 310, 990, 1107, 1165
BssECI CCNNGG 3 cut(s) 314, 422, 423
BssMI GATC 3 cut(s) 291, 343, 562
BssT1I CCWWGG 1 cut(s) 314
Bst2UI CCWGG 2 cut(s) 424, 733
Bst4CI ACNGT 3 cut(s) 418, 872, 956
Bst6I CTCTTC 2 cut(s) 228, 404
BstAFI CTTAAG 1 cut(s) 748
BstC8I GCNNGC 2 cut(s) 1004, 1008
BstDEI CTNAG 1 cut(s) 136
BstF5I GGATG 2 cut(s) 436, 1171
BstFNI CGCG 2 cut(s) 47, 180
BstKTI GATC 3 cut(s) 294, 346, 565
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 3 cut(s) 291, 343, 562
BstMWI GCNNNNNNNGC 2 cut(s) 85, 115
BstNI CCWGG 2 cut(s) 424, 733
BstNSI RCATGY 2 cut(s) 383, 1006
BstSCI CCNGG 3 cut(s) 422, 572, 731
BstSFI CTRYAG 1 cut(s) 759
BstSLI GKGCMC 1 cut(s) 963
BstUI CGCG 2 cut(s) 47, 180
BstV1I GCAGC 7 cut(s) 97, 118, 121, 175, 745, 773, 1051
BsuRI GGCC 2 cut(s) 846, 961
BtgZI GCGATG 1 cut(s) 161
BtsCI GGATG 2 cut(s) 436, 1171
BtsIMutI CAGTG 4 cut(s) 369, 724, 997, 1114
BtuMI TCGCGA 1 cut(s) 180
BveI ACCTGC 2 cut(s) 887, 1028
Cac8I GCNNGC 2 cut(s) 1004, 1008
Cfr13I GGNCC 3 cut(s) 845, 959, 960
Csp6I GTAC 4 cut(s) 49, 419, 650, 952
CspCI CAANNNNNGTGG 2 cut(s) 853, 888
CviAII CATG 4 cut(s) 380, 653, 964, 1003
CviQI GTAC 4 cut(s) 49, 419, 650, 952
DdeI CTNAG 1 cut(s) 136
DpnI GATC 3 cut(s) 293, 345, 564
DpnII GATC 3 cut(s) 291, 343, 562
Eam1104I CTCTTC 2 cut(s) 228, 404
EarI CTCTTC 2 cut(s) 228, 404
Eco130I CCWWGG 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 963
Eco32I GATATC 2 cut(s) 983, 1169
Eco57I CTGAAG 2 cut(s) 238, 252
EcoRII CCWGG 2 cut(s) 422, 731
EcoRV GATATC 2 cut(s) 983, 1169
EcoT14I CCWWGG 1 cut(s) 314
EcoT38I GRGCYC 1 cut(s) 963
ErhI CCWWGG 1 cut(s) 314
FaeI CATG 4 cut(s) 383, 656, 967, 1006
FalI AAGNNNNNCTT 2 cut(s) 606, 638
FatI CATG 4 cut(s) 379, 652, 963, 1002
FauI CCCGC 2 cut(s) 105, 184
FauNDI CATATG 1 cut(s) 529
Fnu4HI GCNGC 7 cut(s) 86, 107, 110, 189, 759, 762, 1065
FokI GGATG 2 cut(s) 443, 1158
FriOI GRGCYC 1 cut(s) 963
Fsp4HI GCNGC 7 cut(s) 86, 107, 110, 189, 759, 762, 1065
FspBI CTAG 2 cut(s) 560, 582
GluI GCNGC 7 cut(s) 86, 107, 110, 189, 759, 762, 1065
GsaI CCCAGC 1 cut(s) 512
GsuI CTGGAG 1 cut(s) 906
HaeIII GGCC 2 cut(s) 846, 961
HapII CCGG 1 cut(s) 573
Hin1II CATG 4 cut(s) 383, 656, 967, 1006
HinfI GANTC 4 cut(s) 164, 182, 278, 359
HpaII CCGG 1 cut(s) 573
HphI GGTGA 1 cut(s) 418
Hpy188I TCNGA 3 cut(s) 343, 640, 1182
Hpy188III TCNNGA 4 cut(s) 179, 582, 623, 786
Hpy99I CGWCG 2 cut(s) 35, 38
HpyAV CCTTC 2 cut(s) 140, 679
HpyCH4III ACNGT 3 cut(s) 418, 872, 956
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 5 cut(s) 527, 761, 776, 896, 1037
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 115
HpyF3I CTNAG 1 cut(s) 136
HpySE526I ACGT 1 cut(s) 488
Hsp92II CATG 4 cut(s) 383, 656, 967, 1006
Kzo9I GATC 3 cut(s) 291, 343, 562
LmnI GCTCC 1 cut(s) 115
Lsp1109I GCAGC 7 cut(s) 97, 118, 121, 175, 745, 773, 1051
LweI GCATC 2 cut(s) 458, 607
MaeI CTAG 2 cut(s) 560, 582
MaeII ACGT 1 cut(s) 488
MaeIII GTNAC 2 cut(s) 331, 598
MalI GATC 3 cut(s) 293, 345, 564
MboI GATC 3 cut(s) 291, 343, 562
MboII GAAGA 9 cut(s) 17, 74, 107, 245, 421, 475, 626, 1146, 1176
MhlI GDGCHC 2 cut(s) 549, 963
MluCI AATT 8 cut(s) 65, 89, 98, 247, 781, 865, 877, 922
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 8 cut(s) 203, 397, 405, 570, 578, 656, 881, 1106
MseI TTAA 3 cut(s) 441, 681, 749
MspA1I CMGCKG 3 cut(s) 112, 188, 764
MspCI CTTAAG 1 cut(s) 748
MspI CCGG 1 cut(s) 573
MspR9I CCNGG 3 cut(s) 424, 574, 733
MvaI CCWGG 2 cut(s) 424, 733
MvnI CGCG 2 cut(s) 47, 180
MwoI GCNNNNNNNGC 2 cut(s) 85, 115
NciI CCSGG 1 cut(s) 574
NdeI CATATG 1 cut(s) 529
NdeII GATC 3 cut(s) 291, 343, 562
NlaIII CATG 4 cut(s) 383, 656, 967, 1006
NlaIV GGNNCC 4 cut(s) 535, 856, 961, 1105
NmuCI GTSAC 2 cut(s) 331, 598
NruI TCGCGA 1 cut(s) 180
NspI RCATGY 2 cut(s) 383, 1006
PaeI GCATGC 1 cut(s) 1006
PasI CCCWGGG 1 cut(s) 423
PciI ACATGT 1 cut(s) 379
PfeI GAWTC 4 cut(s) 164, 182, 278, 359
PflMI CCANNNNNTGG 1 cut(s) 992
PkrI GCNGC 7 cut(s) 87, 108, 111, 190, 760, 763, 1066
PscI ACATGT 1 cut(s) 379
PsiI TTATAA 1 cut(s) 287
Psp6I CCWGG 2 cut(s) 422, 731
PspFI CCCAGC 1 cut(s) 508
PspGI CCWGG 2 cut(s) 422, 731
PspN4I GGNNCC 4 cut(s) 535, 856, 961, 1105
PspOMI GGGCCC 1 cut(s) 959
PspPI GGNCC 3 cut(s) 845, 959, 960
PstI CTGCAG 1 cut(s) 763
PvuII CAGCTG 2 cut(s) 188, 764
RruI TCGCGA 1 cut(s) 180
RsaI GTAC 4 cut(s) 50, 420, 651, 953
RsaNI GTAC 4 cut(s) 49, 419, 650, 952
SaqAI TTAA 3 cut(s) 441, 681, 749
SatI GCNGC 7 cut(s) 86, 107, 110, 189, 759, 762, 1065
Sau3AI GATC 3 cut(s) 291, 343, 562
Sau96I GGNCC 3 cut(s) 845, 959, 960
ScrFI CCNGG 3 cut(s) 424, 574, 733
SduI GDGCHC 2 cut(s) 549, 963
SfaNI GCATC 2 cut(s) 458, 607
SfcI CTRYAG 1 cut(s) 759
SmlI CTYRAG 1 cut(s) 748
SmoI CTYRAG 1 cut(s) 748
SphI GCATGC 1 cut(s) 1006
Sse9I AATT 8 cut(s) 65, 89, 98, 247, 781, 865, 877, 922
SsiI CCGC 4 cut(s) 77, 112, 191, 1089
SspI AATATT 1 cut(s) 518
SspMI CTAG 2 cut(s) 560, 582
StyD4I CCNGG 3 cut(s) 422, 572, 731
StyI CCWWGG 1 cut(s) 314
TaaI ACNGT 3 cut(s) 418, 872, 956
TaiI ACGT 1 cut(s) 491
TaqI TCGA 4 cut(s) 30, 125, 294, 452
TasI AATT 8 cut(s) 65, 89, 98, 247, 781, 865, 877, 922
TatI WGTACW 1 cut(s) 649
TfiI GAWTC 4 cut(s) 164, 182, 278, 359
Tru1I TTAA 3 cut(s) 441, 681, 749
Tru9I TTAA 3 cut(s) 441, 681, 749
TscAI CASTG 4 cut(s) 369, 724, 997, 1114
TseFI GTSAC 2 cut(s) 331, 598
TseI GCWGC 7 cut(s) 85, 106, 109, 188, 758, 761, 1064
Tsp45I GTSAC 2 cut(s) 331, 598
TspDTI ATGAA 3 cut(s) 159, 627, 669
TspRI CASTG 4 cut(s) 369, 724, 997, 1114
Van91I CCANNNNNTGG 1 cut(s) 992
Vha464I CTTAAG 1 cut(s) 748
XapI RAATTY 2 cut(s) 65, 98
XbaI TCTAGA 1 cut(s) 581
XceI RCATGY 2 cut(s) 383, 1006
XspI CTAG 2 cut(s) 560, 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.