Rh2BG443500

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0012129
Physical Location & Seq
Reverse (-)
62797847 .. 62801494
3648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG443500.1

Sequence Viewer

Length: 882 bp
ATGTTAGACAAACATACTGGGAGGCCAAGGGGGTTTGGATTCGTAACATTTTCTGATCCAGTGGCTGCTGATGCAGTTTTGGAGGAAGAACATGTCATAGATGGCAGAGTGGTGGAGGTGAAGAGGACCGTTCCCAGGGAGGATATGGGATTTAAGGGGGGATCAAAAAGAAAGAAGATTTTTGTTGGTGGGATACCAACGTCTTTGAATGATGAGGAATTGGGGGAATATTTCTCTACATTTGGTAGCATTGTTGAACACCAGATTATGGTAGATCACAAAACTGGGAGGTCTAGAGGATTTGGATTTGTCACTTTTGAGAGTGAAGATGCTCTTGACAAGGTATTCTCAGAAGGAAAAATACATGAACTTGGAGGCAAACAGGTGGAAATAAAAAGGGCTGAACCTAAAAGGCCTGGTGGTGATTTTAGTGGTAGTGCTGCAAGGTCGTATGGTGGCTTAGGTGGCCCTGCAGCTGGATATGGTGGATATAATTCTGGAGGTCGTTTCAATGGAAAAATGGGCAGGGGCTATGGTGGACCTGGTGGTTATGGCGCTGCCTATGGGAATTACAACAATTATGCTGGAAATTATGCTGCGAACTATGCAGGTTTCTATGGTGGCTATGGTGGATATGGATATGGTTTTGGGTATGGCGGACCCATGTATGGCAATGCTGGATATGGAGCGGGTGGTTATGGCATGCCTGGTGGTTATGGTGCTCCTACTGGTTATGGTGGTGGTAAAGGGTATGGAAGTGGTTCTGCTGGTCGGGGTCAAGGTAGGGGTCGGGGGCGCGGTGGTAGTAGTTATGATGCTGGTAGAGGATATGATAGGAGTGGTGATTCTACAACTGGAAGATATCATCCTTATCAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 ko03040 map03015 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

293

Amino Acids

30.56

Weight (kDa)

9.15

Isoelectric Point (pI)

28.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_7 PF16367 58 - 120 2.5e-06 RNA recognition motif
RRM_1 PF00076 60 - 128 7e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17640 AT1G17640 AT1G17640
fragaria_vesca FvH4_6g33670
malus_domestica MD09G1191800.v1.1
prunus_persica Prupe.3G048000_v2.0.a1
pyrus_communis pycom07g10230 pycom09g10830
rosa_chinensis RchiOBHm_Chr2g0143581
rosa_laevigata RLG00000020048
rosa_multiflora Rmu_ssc0000231.1_g000013
rosa_roxburghii Rroxscaffold_2G00101640
rosa_rugosa Rorug02G0384000 Rorug02G0384000
rosa_samantha Rh2AG435900 Rh2BG443500 Rh2CG422000 Rh2DG453900
rosa_wichuraiana Rw2G035520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 599
AccB7I CCANNNNNTGG 1 cut(s) 268
AccBSI CCGCTC 1 cut(s) 689
AccII CGCG 1 cut(s) 798
AciI CCGC 3 cut(s) 657, 689, 798
AclWI GGATC 2 cut(s) 50, 169
AfiI CCNNNNNNNGG 4 cut(s) 135, 268, 476, 668
AflIII ACRYGT 1 cut(s) 91
AgsI TTSAA 3 cut(s) 208, 257, 511
AjnI CCWGG 4 cut(s) 134, 415, 541, 706
AluBI AGCT 1 cut(s) 476
AluI AGCT 1 cut(s) 476
Alw21I GWGCWC 1 cut(s) 724
AlwI GGATC 2 cut(s) 50, 169
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 3 cut(s) 23, 413, 466
ApeKI GCWGC 5 cut(s) 65, 440, 473, 557, 596
Asp700I GAANNNNTTC 1 cut(s) 760
AspLEI GCGC 2 cut(s) 557, 798
AspS9I GGNCC 4 cut(s) 126, 467, 539, 659
AsuHPI GGTGA 3 cut(s) 130, 434, 854
AvaII GGWCC 3 cut(s) 126, 539, 659
BaeI ACNNNNGTAYC 2 cut(s) 185, 218
BarI GAAGNNNNNNTAC 2 cut(s) 345, 377
Bbv12I GWGCWC 1 cut(s) 724
BbvI GCAGC 5 cut(s) 52, 427, 485, 544, 583
BccI CCATC 1 cut(s) 95
BciT130I CCWGG 4 cut(s) 136, 417, 543, 708
BciVI GTATCC 1 cut(s) 186
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 1 cut(s) 471
BfoI RGCGCY 1 cut(s) 558
BfuAI ACCTGC 1 cut(s) 599
BfuI GTATCC 1 cut(s) 186
BisI GCNGC 5 cut(s) 66, 441, 474, 558, 597
BlsI GCNGC 5 cut(s) 67, 442, 475, 559, 598
Bme1390I CCNGG 4 cut(s) 136, 417, 543, 708
Bme18I GGWCC 3 cut(s) 126, 539, 659
BmgT120I GGNCC 4 cut(s) 126, 467, 539, 659
BmiI GGNNCC 1 cut(s) 661
BmrFI CCNGG 4 cut(s) 136, 417, 543, 708
BmrI ACTGGG 2 cut(s) 27, 294
BmsI GCATC 3 cut(s) 61, 319, 805
BmuI ACTGGG 2 cut(s) 27, 294
BpmI CTGGAG 1 cut(s) 519
Bpu10I CCTNAGC 1 cut(s) 460
BsaJI CCNNGG 3 cut(s) 26, 134, 135
Bsc4I CCNNNNNNNGG 4 cut(s) 135, 268, 476, 668
Bse1I ACTGG 5 cut(s) 22, 59, 289, 733, 859
Bse3DI GCAATG 1 cut(s) 679
BseBI CCWGG 4 cut(s) 136, 417, 543, 708
BseDI CCNNGG 3 cut(s) 26, 134, 135
BseGI GGATG 1 cut(s) 865
BseLI CCNNNNNNNGG 4 cut(s) 135, 268, 476, 668
BseMI GCAATG 1 cut(s) 679
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 5 cut(s) 22, 59, 289, 733, 859
BseXI GCAGC 5 cut(s) 52, 427, 485, 544, 583
Bsh1236I CGCG 1 cut(s) 798
BshFI GGCC 3 cut(s) 25, 415, 468
BsiHKAI GWGCWC 1 cut(s) 724
BslI CCNNNNNNNGG 4 cut(s) 135, 268, 476, 668
BsnI GGCC 3 cut(s) 25, 415, 468
Bsp1286I GDGCHC 1 cut(s) 724
Bsp143I GATC 3 cut(s) 55, 161, 274
BspACI CCGC 3 cut(s) 657, 689, 798
BspANI GGCC 3 cut(s) 25, 415, 468
BspCNI CTCAG 1 cut(s) 362
BspFNI CGCG 1 cut(s) 798
BspLI GGNNCC 1 cut(s) 661
BspMAI CTGCAG 1 cut(s) 475
BspMI ACCTGC 1 cut(s) 599
BspPI GGATC 2 cut(s) 50, 169
BsrBI CCGCTC 1 cut(s) 689
BsrDI GCAATG 1 cut(s) 679
BsrI ACTGG 5 cut(s) 22, 59, 289, 733, 859
BssECI CCNNGG 3 cut(s) 26, 134, 135
BssMI GATC 3 cut(s) 55, 161, 274
BssT1I CCWWGG 1 cut(s) 26
Bst2UI CCWGG 4 cut(s) 136, 417, 543, 708
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 704
BstDEI CTNAG 2 cut(s) 349, 460
BstF5I GGATG 1 cut(s) 865
BstFNI CGCG 1 cut(s) 798
BstH2I RGCGCY 1 cut(s) 558
BstHHI GCGC 2 cut(s) 557, 798
BstKTI GATC 3 cut(s) 58, 164, 277
BstMBI GATC 3 cut(s) 55, 161, 274
BstMWI GCNNNNNNNGC 3 cut(s) 71, 465, 605
BstNI CCWGG 4 cut(s) 136, 417, 543, 708
BstNSI RCATGY 2 cut(s) 95, 706
BstSCI CCNGG 4 cut(s) 134, 415, 541, 706
BstSFI CTRYAG 1 cut(s) 471
BstUI CGCG 1 cut(s) 798
BstV1I GCAGC 5 cut(s) 52, 427, 485, 544, 583
BsuI GTATCC 1 cut(s) 186
BsuRI GGCC 3 cut(s) 25, 415, 468
BtsCI GGATG 1 cut(s) 865
BtsIMutI CAGTG 1 cut(s) 66
BveI ACCTGC 1 cut(s) 599
Cac8I GCNNGC 1 cut(s) 704
CaiI CAGNNNCTG 1 cut(s) 65
CfoI GCGC 2 cut(s) 557, 798
Cfr13I GGNCC 4 cut(s) 126, 467, 539, 659
CsiI ACCWGGT 1 cut(s) 541
CviAII CATG 4 cut(s) 92, 365, 664, 703
CviJI RGCY 9 cut(s) 25, 65, 401, 415, 459, 468, 476, 531, 624
CviKI_1 RGCY 9 cut(s) 25, 65, 401, 415, 459, 468, 476, 531, 624
DdeI CTNAG 2 cut(s) 349, 460
DpnI GATC 3 cut(s) 57, 163, 276
DpnII GATC 3 cut(s) 55, 161, 274
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 1 cut(s) 672
Eco130I CCWWGG 1 cut(s) 26
Eco147I AGGCCT 1 cut(s) 415
Eco32I GATATC 1 cut(s) 863
Eco47I GGWCC 3 cut(s) 126, 539, 659
EcoRII CCWGG 4 cut(s) 134, 415, 541, 706
EcoRV GATATC 1 cut(s) 863
EcoT14I CCWWGG 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 4 cut(s) 95, 368, 667, 706
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FatI CATG 4 cut(s) 91, 364, 663, 702
FauI CCCGC 1 cut(s) 682
Fnu4HI GCNGC 5 cut(s) 66, 441, 474, 558, 597
FokI GGATG 1 cut(s) 852
Fsp4HI GCNGC 5 cut(s) 66, 441, 474, 558, 597
FspBI CTAG 1 cut(s) 294
GlaI GCGC 2 cut(s) 556, 797
GluI GCNGC 5 cut(s) 66, 441, 474, 558, 597
GsuI CTGGAG 1 cut(s) 519
HaeII RGCGCY 1 cut(s) 558
HaeIII GGCC 3 cut(s) 25, 415, 468
HhaI GCGC 2 cut(s) 557, 798
Hin1II CATG 4 cut(s) 95, 368, 667, 706
Hin6I GCGC 2 cut(s) 555, 796
HinP1I GCGC 2 cut(s) 555, 796
HinfI GANTC 2 cut(s) 39, 845
HphI GGTGA 3 cut(s) 130, 434, 854
Hpy166II GTNNAC 1 cut(s) 539
Hpy188I TCNGA 2 cut(s) 55, 352
Hpy188III TCNNGA 3 cut(s) 294, 335, 498
Hpy8I GTNNAC 1 cut(s) 539
HpyAV CCTTC 1 cut(s) 347
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 4 cut(s) 74, 443, 473, 608
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 465, 605
HpyF3I CTNAG 2 cut(s) 349, 460
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 4 cut(s) 95, 368, 667, 706
HspAI GCGC 2 cut(s) 555, 796
Kzo9I GATC 3 cut(s) 55, 161, 274
LmnI GCTCC 2 cut(s) 686, 727
Lsp1109I GCAGC 5 cut(s) 52, 427, 485, 544, 583
LweI GCATC 3 cut(s) 61, 319, 805
MabI ACCWGGT 1 cut(s) 541
MaeI CTAG 1 cut(s) 294
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 2 cut(s) 43, 310
MalI GATC 3 cut(s) 57, 163, 276
MbiI CCGCTC 1 cut(s) 689
MboI GATC 3 cut(s) 55, 161, 274
MboII GAAGA 5 cut(s) 98, 133, 187, 338, 870
MhlI GDGCHC 1 cut(s) 724
MluCI AATT 6 cut(s) 218, 493, 568, 577, 589, 877
MroXI GAANNNNTTC 1 cut(s) 760
MseI TTAA 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 476
MspR9I CCNGG 4 cut(s) 136, 417, 543, 708
MvaI CCWGG 4 cut(s) 136, 417, 543, 708
MvnI CGCG 1 cut(s) 798
MwoI GCNNNNNNNGC 3 cut(s) 71, 465, 605
NdeII GATC 3 cut(s) 55, 161, 274
NlaIII CATG 4 cut(s) 95, 368, 667, 706
NlaIV GGNNCC 1 cut(s) 661
NmuCI GTSAC 1 cut(s) 310
NspI RCATGY 2 cut(s) 95, 706
PaeI GCATGC 1 cut(s) 706
PasI CCCWGGG 1 cut(s) 135
PceI AGGCCT 1 cut(s) 415
PciI ACATGT 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 760
PfeI GAWTC 2 cut(s) 39, 845
PflMI CCANNNNNTGG 1 cut(s) 268
PkrI GCNGC 5 cut(s) 67, 442, 475, 559, 598
PscI ACATGT 1 cut(s) 91
Psp6I CCWGG 4 cut(s) 134, 415, 541, 706
PspGI CCWGG 4 cut(s) 134, 415, 541, 706
PspN4I GGNNCC 1 cut(s) 661
PspPI GGNCC 4 cut(s) 126, 467, 539, 659
PstI CTGCAG 1 cut(s) 475
PstNI CAGNNNCTG 1 cut(s) 65
PvuII CAGCTG 1 cut(s) 476
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 5 cut(s) 66, 441, 474, 558, 597
Sau3AI GATC 3 cut(s) 55, 161, 274
Sau96I GGNCC 4 cut(s) 126, 467, 539, 659
ScrFI CCNGG 4 cut(s) 136, 417, 543, 708
SduI GDGCHC 1 cut(s) 724
SexAI ACCWGGT 1 cut(s) 541
SfaNI GCATC 3 cut(s) 61, 319, 805
SfcI CTRYAG 1 cut(s) 471
SinI GGWCC 3 cut(s) 126, 539, 659
SphI GCATGC 1 cut(s) 706
Sse9I AATT 6 cut(s) 218, 493, 568, 577, 589, 877
SseBI AGGCCT 1 cut(s) 415
SsiI CCGC 3 cut(s) 657, 689, 798
SspI AATATT 1 cut(s) 230
SspMI CTAG 1 cut(s) 294
StuI AGGCCT 1 cut(s) 415
StyD4I CCNGG 4 cut(s) 134, 415, 541, 706
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 1 cut(s) 203
TasI AATT 6 cut(s) 218, 493, 568, 577, 589, 877
TfiI GAWTC 2 cut(s) 39, 845
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 5 cut(s) 65, 440, 473, 557, 596
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 1 cut(s) 381
TspRI CASTG 1 cut(s) 66
Van91I CCANNNNNTGG 1 cut(s) 268
VpaK11BI GGWCC 3 cut(s) 126, 539, 659
XbaI TCTAGA 1 cut(s) 293
XceI RCATGY 2 cut(s) 95, 706
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 760
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.