Rh2DG453900

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012129
Physical Location & Seq
Reverse (-)
65716315 .. 65719962
3648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG453900.1

Sequence Viewer

Length: 954 bp
ATGATGATTTTCTTTACAGAAACCTTTACTAATTACTTCAGCAAATATGGAGAAATAGCAGATTCTGTTATAATGTTAGACAAACATACTGGGAGGCCAAGGGGGTTTGGATTCGTAACATTTTCTGATCCAGTGGCTGCTGATGCAGTTTTGGAGGAAGAACATGTCATAGATGGCAGAGTGGTGGAGGTGAAGAGGACCGTTCCCAGGGAGGATATGGGATTTAAGGGGGGATCAAAAAGAAAGAAGATTTTTGTTGGTGGGATACCAACGTCTTTGAATGATGAGGAATTGGGGGAATATTTCTCTACATTTGGTAGCATTGTTGAACACCAGATTATGGTAGATCACAAAACTGGGAGGTCTAGAGGATTTGGATTTGTCACTTTTGAGAGTGAAGATGCTCTTGACAAGGTATTCTCAGAAGGAAAAATACATGAACTTGGAGGCAAACAGGTGGAAATAAAAAGGGCTGAACCTAAAAGGCCTGGTGGTGATTTTAGTGGTAGTGCTGCAAGGTCGTATGGTGGCTTAGGTGGCCCTGCAGCTGGATATGGTGGATATAATTCTGGAGGTCGTTTCAATGGAAAAATGGGCAGGGGCTATGGTGGACCTGGTGGTTATGGCGCTGCCTATGGGAATTACAACAATTATGCTGGAAATTATGCTGCGAACTATGCAGGTTTCTATGGTGGCTATGGTGGATATGGATATGGTTTTGGGTATGGCGGACCCATGTATGGCAATGCTGGATATGGAGCGGGTGGTTATGGCATGCCTGGTGGTTATGGTGCTCCTACTGGTTATGGTGGTGGTAAAGGGTATGGAAGTGGTTCTGCTGGTCGGGGTCAAGGTAGGGGTCGGGGGCGCGGTGGTAGTAGTTATGATGCTGGTAGAGGATATGATAGGAGTGGTGATTCTACAACTGGAAGATATCATCCTTATCAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 ko03040 map03015 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

317

Amino Acids

33.39

Weight (kDa)

8.88

Isoelectric Point (pI)

28.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 11 - 60 2.4e-09 RNA recognition motif
RRM_7 PF16367 82 - 144 2.9e-06 RNA recognition motif
RRM_1 PF00076 84 - 152 8.1e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17640 AT1G17640 AT1G17640
fragaria_vesca FvH4_6g33670
malus_domestica MD09G1191800.v1.1
prunus_persica Prupe.3G048000_v2.0.a1
pyrus_communis pycom07g10230 pycom09g10830
rosa_chinensis RchiOBHm_Chr2g0143581
rosa_laevigata RLG00000020048
rosa_multiflora Rmu_ssc0000231.1_g000013
rosa_roxburghii Rroxscaffold_2G00101640
rosa_rugosa Rorug02G0384000 Rorug02G0384000
rosa_samantha Rh2AG435900 Rh2BG443500 Rh2CG422000 Rh2DG453900
rosa_wichuraiana Rw2G035520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 71
Acc36I ACCTGC 1 cut(s) 671
AccB7I CCANNNNNTGG 1 cut(s) 340
AccBSI CCGCTC 1 cut(s) 761
AccII CGCG 1 cut(s) 870
AciI CCGC 3 cut(s) 729, 761, 870
AclWI GGATC 2 cut(s) 122, 241
AcuI CTGAAG 1 cut(s) 22
AfiI CCNNNNNNNGG 4 cut(s) 207, 340, 548, 740
AflIII ACRYGT 1 cut(s) 163
AgsI TTSAA 3 cut(s) 280, 329, 583
AjnI CCWGG 4 cut(s) 206, 487, 613, 778
AluBI AGCT 1 cut(s) 548
AluI AGCT 1 cut(s) 548
Alw21I GWGCWC 1 cut(s) 796
AlwI GGATC 2 cut(s) 122, 241
AlwNI CAGNNNCTG 2 cut(s) 65, 137
AoxI GGCC 3 cut(s) 95, 485, 538
ApeKI GCWGC 5 cut(s) 137, 512, 545, 629, 668
Asp700I GAANNNNTTC 1 cut(s) 832
AspLEI GCGC 2 cut(s) 629, 870
AspS9I GGNCC 4 cut(s) 198, 539, 611, 731
AsuHPI GGTGA 3 cut(s) 202, 506, 926
AvaII GGWCC 3 cut(s) 198, 611, 731
BaeI ACNNNNGTAYC 2 cut(s) 257, 290
BarI GAAGNNNNNNTAC 2 cut(s) 417, 449
Bbv12I GWGCWC 1 cut(s) 796
BbvI GCAGC 5 cut(s) 124, 499, 557, 616, 655
BccI CCATC 1 cut(s) 167
BciT130I CCWGG 4 cut(s) 208, 489, 615, 780
BciVI GTATCC 1 cut(s) 258
BfaI CTAG 1 cut(s) 366
BfmI CTRYAG 1 cut(s) 543
BfoI RGCGCY 1 cut(s) 630
BfuAI ACCTGC 1 cut(s) 671
BfuI GTATCC 1 cut(s) 258
BisI GCNGC 5 cut(s) 138, 513, 546, 630, 669
BlsI GCNGC 5 cut(s) 139, 514, 547, 631, 670
Bme1390I CCNGG 4 cut(s) 208, 489, 615, 780
Bme18I GGWCC 3 cut(s) 198, 611, 731
BmgT120I GGNCC 4 cut(s) 198, 539, 611, 731
BmiI GGNNCC 1 cut(s) 733
BmrFI CCNGG 4 cut(s) 208, 489, 615, 780
BmrI ACTGGG 2 cut(s) 99, 366
BmsI GCATC 3 cut(s) 133, 391, 877
BmuI ACTGGG 2 cut(s) 99, 366
BpmI CTGGAG 1 cut(s) 591
Bpu10I CCTNAGC 1 cut(s) 532
BsaJI CCNNGG 3 cut(s) 98, 206, 207
Bsc4I CCNNNNNNNGG 4 cut(s) 207, 340, 548, 740
Bse1I ACTGG 5 cut(s) 94, 131, 361, 805, 931
Bse3DI GCAATG 1 cut(s) 751
BseBI CCWGG 4 cut(s) 208, 489, 615, 780
BseDI CCNNGG 3 cut(s) 98, 206, 207
BseGI GGATG 1 cut(s) 937
BseLI CCNNNNNNNGG 4 cut(s) 207, 340, 548, 740
BseMI GCAATG 1 cut(s) 751
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 5 cut(s) 94, 131, 361, 805, 931
BseXI GCAGC 5 cut(s) 124, 499, 557, 616, 655
Bsh1236I CGCG 1 cut(s) 870
BshFI GGCC 3 cut(s) 97, 487, 540
BsiHKAI GWGCWC 1 cut(s) 796
BslI CCNNNNNNNGG 4 cut(s) 207, 340, 548, 740
BsnI GGCC 3 cut(s) 97, 487, 540
Bsp1286I GDGCHC 1 cut(s) 796
Bsp143I GATC 3 cut(s) 127, 233, 346
BspACI CCGC 3 cut(s) 729, 761, 870
BspANI GGCC 3 cut(s) 97, 487, 540
BspCNI CTCAG 1 cut(s) 434
BspFNI CGCG 1 cut(s) 870
BspLI GGNNCC 1 cut(s) 733
BspMAI CTGCAG 1 cut(s) 547
BspMI ACCTGC 1 cut(s) 671
BspPI GGATC 2 cut(s) 122, 241
BsrBI CCGCTC 1 cut(s) 761
BsrDI GCAATG 1 cut(s) 751
BsrI ACTGG 5 cut(s) 94, 131, 361, 805, 931
BssECI CCNNGG 3 cut(s) 98, 206, 207
BssMI GATC 3 cut(s) 127, 233, 346
BssT1I CCWWGG 1 cut(s) 98
Bst2UI CCWGG 4 cut(s) 208, 489, 615, 780
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 776
BstDEI CTNAG 2 cut(s) 421, 532
BstF5I GGATG 1 cut(s) 937
BstFNI CGCG 1 cut(s) 870
BstH2I RGCGCY 1 cut(s) 630
BstHHI GCGC 2 cut(s) 629, 870
BstKTI GATC 3 cut(s) 130, 236, 349
BstMBI GATC 3 cut(s) 127, 233, 346
BstMWI GCNNNNNNNGC 3 cut(s) 143, 537, 677
BstNI CCWGG 4 cut(s) 208, 489, 615, 780
BstNSI RCATGY 2 cut(s) 167, 778
BstSCI CCNGG 4 cut(s) 206, 487, 613, 778
BstSFI CTRYAG 1 cut(s) 543
BstUI CGCG 1 cut(s) 870
BstV1I GCAGC 5 cut(s) 124, 499, 557, 616, 655
BsuI GTATCC 1 cut(s) 258
BsuRI GGCC 3 cut(s) 97, 487, 540
BtsCI GGATG 1 cut(s) 937
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 671
Cac8I GCNNGC 1 cut(s) 776
CaiI CAGNNNCTG 2 cut(s) 65, 137
CfoI GCGC 2 cut(s) 629, 870
Cfr13I GGNCC 4 cut(s) 198, 539, 611, 731
CsiI ACCWGGT 1 cut(s) 613
CviAII CATG 4 cut(s) 164, 437, 736, 775
CviJI RGCY 9 cut(s) 97, 137, 473, 487, 531, 540, 548, 603, 696
CviKI_1 RGCY 9 cut(s) 97, 137, 473, 487, 531, 540, 548, 603, 696
DdeI CTNAG 2 cut(s) 421, 532
DpnI GATC 3 cut(s) 129, 235, 348
DpnII GATC 3 cut(s) 127, 233, 346
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
EciI GGCGGA 1 cut(s) 744
Eco130I CCWWGG 1 cut(s) 98
Eco147I AGGCCT 1 cut(s) 487
Eco32I GATATC 1 cut(s) 935
Eco47I GGWCC 3 cut(s) 198, 611, 731
Eco57I CTGAAG 1 cut(s) 22
EcoRII CCWGG 4 cut(s) 206, 487, 613, 778
EcoRV GATATC 1 cut(s) 935
EcoT14I CCWWGG 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 4 cut(s) 167, 440, 739, 778
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FatI CATG 4 cut(s) 163, 436, 735, 774
FauI CCCGC 1 cut(s) 754
Fnu4HI GCNGC 5 cut(s) 138, 513, 546, 630, 669
FokI GGATG 1 cut(s) 924
Fsp4HI GCNGC 5 cut(s) 138, 513, 546, 630, 669
FspBI CTAG 1 cut(s) 366
GlaI GCGC 2 cut(s) 628, 869
GluI GCNGC 5 cut(s) 138, 513, 546, 630, 669
GsuI CTGGAG 1 cut(s) 591
HaeII RGCGCY 1 cut(s) 630
HaeIII GGCC 3 cut(s) 97, 487, 540
HhaI GCGC 2 cut(s) 629, 870
Hin1II CATG 4 cut(s) 167, 440, 739, 778
Hin6I GCGC 2 cut(s) 627, 868
HinP1I GCGC 2 cut(s) 627, 868
HinfI GANTC 3 cut(s) 62, 111, 917
HphI GGTGA 3 cut(s) 202, 506, 926
Hpy166II GTNNAC 1 cut(s) 611
Hpy188I TCNGA 2 cut(s) 127, 424
Hpy188III TCNNGA 3 cut(s) 366, 407, 570
Hpy8I GTNNAC 1 cut(s) 611
HpyAV CCTTC 1 cut(s) 419
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 4 cut(s) 146, 515, 545, 680
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 537, 677
HpyF3I CTNAG 2 cut(s) 421, 532
HpySE526I ACGT 1 cut(s) 272
Hsp92II CATG 4 cut(s) 167, 440, 739, 778
HspAI GCGC 2 cut(s) 627, 868
Kzo9I GATC 3 cut(s) 127, 233, 346
LmnI GCTCC 2 cut(s) 758, 799
Lsp1109I GCAGC 5 cut(s) 124, 499, 557, 616, 655
LweI GCATC 3 cut(s) 133, 391, 877
MabI ACCWGGT 1 cut(s) 613
MaeI CTAG 1 cut(s) 366
MaeII ACGT 1 cut(s) 272
MaeIII GTNAC 2 cut(s) 115, 382
MalI GATC 3 cut(s) 129, 235, 348
MbiI CCGCTC 1 cut(s) 761
MboI GATC 3 cut(s) 127, 233, 346
MboII GAAGA 5 cut(s) 170, 205, 259, 410, 942
MhlI GDGCHC 1 cut(s) 796
MluCI AATT 7 cut(s) 31, 290, 565, 640, 649, 661, 949
MroXI GAANNNNTTC 1 cut(s) 832
MseI TTAA 1 cut(s) 225
MspA1I CMGCKG 1 cut(s) 548
MspR9I CCNGG 4 cut(s) 208, 489, 615, 780
MvaI CCWGG 4 cut(s) 208, 489, 615, 780
MvnI CGCG 1 cut(s) 870
MwoI GCNNNNNNNGC 3 cut(s) 143, 537, 677
NdeII GATC 3 cut(s) 127, 233, 346
NlaIII CATG 4 cut(s) 167, 440, 739, 778
NlaIV GGNNCC 1 cut(s) 733
NmuCI GTSAC 1 cut(s) 382
NspI RCATGY 2 cut(s) 167, 778
PaeI GCATGC 1 cut(s) 778
PasI CCCWGGG 1 cut(s) 207
PceI AGGCCT 1 cut(s) 487
PciI ACATGT 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 832
PfeI GAWTC 3 cut(s) 62, 111, 917
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 5 cut(s) 139, 514, 547, 631, 670
PscI ACATGT 1 cut(s) 163
PsiI TTATAA 1 cut(s) 71
Psp6I CCWGG 4 cut(s) 206, 487, 613, 778
PspGI CCWGG 4 cut(s) 206, 487, 613, 778
PspN4I GGNNCC 1 cut(s) 733
PspPI GGNCC 4 cut(s) 198, 539, 611, 731
PstI CTGCAG 1 cut(s) 547
PstNI CAGNNNCTG 2 cut(s) 65, 137
PvuII CAGCTG 1 cut(s) 548
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 5 cut(s) 138, 513, 546, 630, 669
Sau3AI GATC 3 cut(s) 127, 233, 346
Sau96I GGNCC 4 cut(s) 198, 539, 611, 731
ScrFI CCNGG 4 cut(s) 208, 489, 615, 780
SduI GDGCHC 1 cut(s) 796
SexAI ACCWGGT 1 cut(s) 613
SfaNI GCATC 3 cut(s) 133, 391, 877
SfcI CTRYAG 1 cut(s) 543
SinI GGWCC 3 cut(s) 198, 611, 731
SphI GCATGC 1 cut(s) 778
Sse9I AATT 7 cut(s) 31, 290, 565, 640, 649, 661, 949
SseBI AGGCCT 1 cut(s) 487
SsiI CCGC 3 cut(s) 729, 761, 870
SspI AATATT 1 cut(s) 302
SspMI CTAG 1 cut(s) 366
StuI AGGCCT 1 cut(s) 487
StyD4I CCNGG 4 cut(s) 206, 487, 613, 778
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 1 cut(s) 202
TaiI ACGT 1 cut(s) 275
TasI AATT 7 cut(s) 31, 290, 565, 640, 649, 661, 949
TfiI GAWTC 3 cut(s) 62, 111, 917
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 5 cut(s) 137, 512, 545, 629, 668
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 1 cut(s) 453
TspRI CASTG 1 cut(s) 138
Van91I CCANNNNNTGG 1 cut(s) 340
VpaK11BI GGWCC 3 cut(s) 198, 611, 731
XbaI TCTAGA 1 cut(s) 365
XceI RCATGY 2 cut(s) 167, 778
XcmI CCANNNNNNNNNTGG 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 832
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.