Prupe.3G048000_v2.0.a1

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012129
Physical Location & Seq
Forward (+)
3391408 .. 3393757
2350 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G048000.1

Sequence Viewer

Length: 1176 bp
ATGGAAGATTTTCCTGAACGCAGTCGTTTCGACGACAACCAAATCGCCTACAATGGAAACGAAGAATTTGAACAACCACCAGAGCAACAATATGAAGAATTTGAACAACCACCAGAGCAACAATTTGATTTGGGGCGTGGTTTTGAAACGAATCATAACGTAGATAGTGAAGGCAATGAGTTTAGGGATTCATTCAATCATCGTGATTCGGCTGCGGGAAAACTATTTGTAGGAGGCGTTTCTTGGGAGACGACTGAAGAGGCCTTTACCAATTACTTCAGCAAGTATGGAGAAATAGCAGATTCTGTTATAATGATTGATAAACATTCTGGGAGGCCAAGGGGGTTTGGGTTTGTAACATTTGCTGATCCAGGGGTTGTTGATTCGGTTTTGGAGGAAGAACATGTCATAGATGGCAGAGTGGTGGAGGTGAAGAGGACAGTCCCGAGGGAGAATATGGGGTTTAAGGGGATATCGAAAAGAAAGAAGATTTTTGTTGGTGGAATACCAACGTCTTTGACTGATGGTATATTGGGGGAATATTTCTCTACATATGGTAGCATTGTTGAGCACCAGATTATGGTAGATCATAAAACTGGGAGGTCTAGAGGATTTGGGTTTGTCACTTTTGAGAATGAAGATGCTCTTGACAAGGTATTTTCTGAGGGCAAGATACACGAACTTGGAGGCAAACAGGTGGAAATAAAAAAGGCTGAACCTAAAAGGGGTGGTGGTGATTTCAGTGGCAGTGCTCCCAAGTCATATGGTGGCTTAGGTGGTGCTGCAGCTGGATATGGTGCATATAATTCTGCAAGTCGGTACAACGGAAAAATGGGCAGGGGCTATGGTGGAGGTGGGTATCCCACCTATGGTACTTACAATAATTATGGTGGAAACTATGCTGGAAGCTATGCGGGTTTCTACGGTGGCTATGGTGGATATGGATATGGATTTGGGTATGGTGGACCCATGTATGGCAATGCTGGATATGCGGCCAGTGGATATGGCATGCCTGCTGGTTATGGTGGGAATACTGCCTATGGTGGTGGTAGAGGATATGGAAATGGTGCTGTTGGCCGTGGTGGTGGTAGCGGCGGTGGAAGTTATGGTTCTGGTAGAGGATATGATCGGAGTGGTGGTTCTACGACCGGAAGATATCATCCTTATCAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 ko03040 map03015 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

392

Amino Acids

41.92

Weight (kDa)

5.51

Isoelectric Point (pI)

30.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17640 AT1G17640 AT1G17640
fragaria_vesca FvH4_6g33670
malus_domestica MD09G1191800.v1.1
prunus_persica Prupe.3G048000_v2.0.a1
pyrus_communis pycom07g10230 pycom09g10830
rosa_chinensis RchiOBHm_Chr2g0143581
rosa_laevigata RLG00000020048
rosa_multiflora Rmu_ssc0000231.1_g000013
rosa_roxburghii Rroxscaffold_2G00101640
rosa_rugosa Rorug02G0384000 Rorug02G0384000
rosa_samantha Rh2AG435900 Rh2BG443500 Rh2CG422000 Rh2DG453900
rosa_wichuraiana Rw2G035520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 580
AciI CCGC 5 cut(s) 215, 914, 992, 1092, 1095
AclWI GGATC 1 cut(s) 362
AcoI YGGCCR 2 cut(s) 993, 1075
AcsI RAATTY 2 cut(s) 65, 98
AcuI CTGAAG 2 cut(s) 262, 276
AfaI GTAC 2 cut(s) 821, 874
AfiI CCNNNNNNNGG 4 cut(s) 580, 725, 869, 974
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 4 cut(s) 71, 104, 146, 196
AjnI CCWGG 1 cut(s) 370
AloI GAACNNNNNNTCC 2 cut(s) 1123, 1155
AluBI AGCT 2 cut(s) 788, 909
AluI AGCT 2 cut(s) 788, 909
Alw21I GWGCWC 2 cut(s) 573, 754
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 1 cut(s) 362
AlwNI CAGNNNCTG 1 cut(s) 305
Ama87I CYCGRG 1 cut(s) 445
AoxI GGCC 4 cut(s) 261, 335, 993, 1075
ApeKI GCWGC 3 cut(s) 212, 782, 785
ApoI RAATTY 2 cut(s) 65, 98
Asp700I GAANNNNTTC 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 965
AsuHPI GGTGA 2 cut(s) 442, 746
AvaI CYCGRG 1 cut(s) 445
AvaII GGWCC 1 cut(s) 965
Bbv12I GWGCWC 2 cut(s) 573, 754
BbvI GCAGC 3 cut(s) 199, 769, 797
BccI CCATC 2 cut(s) 407, 518
BceAI ACGGC 1 cut(s) 1062
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 1 cut(s) 372
BciVI GTATCC 1 cut(s) 870
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 1 cut(s) 606
BfmI CTRYAG 1 cut(s) 783
BfuI GTATCC 1 cut(s) 870
BisI GCNGC 5 cut(s) 213, 783, 786, 993, 1093
BlsI GCNGC 5 cut(s) 214, 784, 787, 994, 1094
Bme1390I CCNGG 1 cut(s) 372
Bme18I GGWCC 1 cut(s) 965
BmeT110I CYCGRG 1 cut(s) 445
BmgT120I GGNCC 1 cut(s) 965
BmiI GGNNCC 1 cut(s) 967
BmrFI CCNGG 1 cut(s) 372
BmrI ACTGGG 1 cut(s) 606
BmsI GCATC 1 cut(s) 631
BmuI ACTGGG 1 cut(s) 606
Bpu10I CCTNAGC 1 cut(s) 772
BsaJI CCNNGG 4 cut(s) 338, 371, 446, 1078
BsaWI WCCGGW 1 cut(s) 1148
BsaXI ACNNNNNCTCC 2 cut(s) 1123, 1153
Bsc4I CCNNNNNNNGG 4 cut(s) 580, 725, 869, 974
Bse1I ACTGG 2 cut(s) 601, 996
Bse3DI GCAATG 2 cut(s) 181, 985
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 4 cut(s) 338, 371, 446, 1078
BseGI GGATG 1 cut(s) 1159
BseLI CCNNNNNNNGG 4 cut(s) 580, 725, 869, 974
BseMI GCAATG 2 cut(s) 181, 985
BseMII CTCAG 1 cut(s) 654
BseNI ACTGG 2 cut(s) 601, 996
BseXI GCAGC 3 cut(s) 199, 769, 797
Bsh1285I CGRYCG 1 cut(s) 1149
BshFI GGCC 4 cut(s) 263, 337, 995, 1077
BsiEI CGRYCG 1 cut(s) 1149
BsiHKAI GWGCWC 2 cut(s) 573, 754
BsiHKCI CYCGRG 1 cut(s) 445
BsiSI CCGG 1 cut(s) 1149
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 4 cut(s) 580, 725, 869, 974
BsmAI GTCTC 1 cut(s) 242
BsmBI CGTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 428
BsnI GGCC 4 cut(s) 263, 337, 995, 1077
BsoBI CYCGRG 1 cut(s) 445
Bsp1286I GDGCHC 2 cut(s) 573, 754
Bsp143I GATC 3 cut(s) 367, 586, 1126
BspACI CCGC 5 cut(s) 215, 914, 992, 1092, 1095
BspANI GGCC 4 cut(s) 263, 337, 995, 1077
BspCNI CTCAG 1 cut(s) 655
BspLI GGNNCC 1 cut(s) 967
BspMAI CTGCAG 1 cut(s) 787
BspPI GGATC 1 cut(s) 362
BsrDI GCAATG 2 cut(s) 181, 985
BsrI ACTGG 2 cut(s) 601, 996
BssECI CCNNGG 4 cut(s) 338, 371, 446, 1078
BssMI GATC 3 cut(s) 367, 586, 1126
BssT1I CCWWGG 1 cut(s) 338
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 2 cut(s) 442, 926
Bst6I CTCTTC 2 cut(s) 252, 428
BstC8I GCNNGC 2 cut(s) 1010, 1014
BstDEI CTNAG 2 cut(s) 663, 772
BstDSI CCRYGG 1 cut(s) 1078
BstF5I GGATG 1 cut(s) 1159
BstKTI GATC 3 cut(s) 370, 589, 1129
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 3 cut(s) 367, 586, 1126
BstMCI CGRYCG 1 cut(s) 1149
BstMWI GCNNNNNNNGC 1 cut(s) 989
BstNI CCWGG 1 cut(s) 372
BstNSI RCATGY 2 cut(s) 407, 1012
BstSCI CCNGG 1 cut(s) 370
BstSFI CTRYAG 1 cut(s) 783
BstV1I GCAGC 3 cut(s) 199, 769, 797
BsuI GTATCC 1 cut(s) 870
BsuRI GGCC 4 cut(s) 263, 337, 995, 1077
BtgI CCRYGG 1 cut(s) 1078
BtsCI GGATG 1 cut(s) 1159
BtsI GCAGTG 1 cut(s) 754
BtsIMutI CAGTG 3 cut(s) 748, 754, 1003
Cac8I GCNNGC 2 cut(s) 1010, 1014
CaiI CAGNNNCTG 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 965
Csp6I GTAC 2 cut(s) 820, 873
CviAII CATG 3 cut(s) 404, 970, 1009
CviQI GTAC 2 cut(s) 820, 873
DdeI CTNAG 2 cut(s) 663, 772
DpnI GATC 3 cut(s) 369, 588, 1128
DpnII GATC 3 cut(s) 367, 586, 1126
EaeI YGGCCR 2 cut(s) 993, 1075
Eam1104I CTCTTC 2 cut(s) 252, 428
EarI CTCTTC 2 cut(s) 252, 428
Eco130I CCWWGG 1 cut(s) 338
Eco147I AGGCCT 1 cut(s) 263
Eco32I GATATC 2 cut(s) 474, 1157
Eco47I GGWCC 1 cut(s) 965
Eco57I CTGAAG 2 cut(s) 262, 276
Eco88I CYCGRG 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 370
EcoRV GATATC 2 cut(s) 474, 1157
EcoT14I CCWWGG 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 338
Esp3I CGTCTC 1 cut(s) 242
FaeI CATG 3 cut(s) 407, 973, 1012
FalI AAGNNNNNCTT 2 cut(s) 630, 662
FaqI GGGAC 1 cut(s) 428
FatI CATG 3 cut(s) 403, 969, 1008
FauI CCCGC 2 cut(s) 208, 907
FauNDI CATATG 2 cut(s) 553, 763
Fnu4HI GCNGC 5 cut(s) 213, 783, 786, 993, 1093
FokI GGATG 1 cut(s) 1146
Fsp4HI GCNGC 5 cut(s) 213, 783, 786, 993, 1093
FspBI CTAG 1 cut(s) 606
GluI GCNGC 5 cut(s) 213, 783, 786, 993, 1093
HaeIII GGCC 4 cut(s) 263, 337, 995, 1077
HapII CCGG 1 cut(s) 1149
Hin1II CATG 3 cut(s) 407, 973, 1012
HinfI GANTC 5 cut(s) 151, 188, 206, 302, 383
HpaII CCGG 1 cut(s) 1149
HphI GGTGA 2 cut(s) 442, 746
Hpy166II GTNNAC 1 cut(s) 965
Hpy188I TCNGA 2 cut(s) 664, 1131
Hpy188III TCNNGA 5 cut(s) 14, 203, 445, 606, 647
Hpy8I GTNNAC 1 cut(s) 965
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 2 cut(s) 442, 926
HpyCH4IV ACGT 2 cut(s) 159, 512
HpyCH4V TGCA 3 cut(s) 785, 800, 812
HpyF10VI GCNNNNNNNGC 1 cut(s) 989
HpyF3I CTNAG 2 cut(s) 663, 772
HpySE526I ACGT 2 cut(s) 159, 512
Hsp92II CATG 3 cut(s) 407, 973, 1012
Kzo9I GATC 3 cut(s) 367, 586, 1126
LmnI GCTCC 1 cut(s) 757
Lsp1109I GCAGC 3 cut(s) 199, 769, 797
LweI GCATC 1 cut(s) 631
MaeI CTAG 1 cut(s) 606
MaeII ACGT 2 cut(s) 159, 512
MaeIII GTNAC 2 cut(s) 355, 622
MalI GATC 3 cut(s) 369, 588, 1128
MboI GATC 3 cut(s) 367, 586, 1126
MboII GAAGA 9 cut(s) 17, 74, 107, 269, 410, 445, 499, 650, 1164
MhlI GDGCHC 2 cut(s) 573, 754
MluCI AATT 6 cut(s) 65, 98, 122, 271, 805, 883
MroXI GAANNNNTTC 1 cut(s) 9
MseI TTAA 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 788
MspI CCGG 1 cut(s) 1149
MspR9I CCNGG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 989
NdeI CATATG 2 cut(s) 553, 763
NdeII GATC 3 cut(s) 367, 586, 1126
NlaIII CATG 3 cut(s) 407, 973, 1012
NlaIV GGNNCC 1 cut(s) 967
NmuCI GTSAC 1 cut(s) 622
NspI RCATGY 2 cut(s) 407, 1012
PaeI GCATGC 1 cut(s) 1012
PceI AGGCCT 1 cut(s) 263
PciI ACATGT 1 cut(s) 403
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 5 cut(s) 151, 188, 206, 302, 383
PflMI CCANNNNNTGG 1 cut(s) 580
PkrI GCNGC 5 cut(s) 214, 784, 787, 994, 1094
PscI ACATGT 1 cut(s) 403
PsiI TTATAA 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 967
PspPI GGNCC 1 cut(s) 965
PstI CTGCAG 1 cut(s) 787
PstNI CAGNNNCTG 1 cut(s) 305
PvuII CAGCTG 1 cut(s) 788
RsaI GTAC 2 cut(s) 821, 874
RsaNI GTAC 2 cut(s) 820, 873
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 5 cut(s) 213, 783, 786, 993, 1093
Sau3AI GATC 3 cut(s) 367, 586, 1126
Sau96I GGNCC 1 cut(s) 965
ScrFI CCNGG 1 cut(s) 372
SduI GDGCHC 2 cut(s) 573, 754
SfaNI GCATC 1 cut(s) 631
SfcI CTRYAG 1 cut(s) 783
SinI GGWCC 1 cut(s) 965
SphI GCATGC 1 cut(s) 1012
Sse9I AATT 6 cut(s) 65, 98, 122, 271, 805, 883
SseBI AGGCCT 1 cut(s) 263
SsiI CCGC 5 cut(s) 215, 914, 992, 1092, 1095
SspI AATATT 1 cut(s) 542
SspMI CTAG 1 cut(s) 606
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 370
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 2 cut(s) 442, 926
TaiI ACGT 2 cut(s) 162, 515
TaqI TCGA 2 cut(s) 30, 476
TasI AATT 6 cut(s) 65, 98, 122, 271, 805, 883
TauI GCSGC 2 cut(s) 995, 1095
TfiI GAWTC 5 cut(s) 151, 188, 206, 302, 383
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 3 cut(s) 748, 754, 1003
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 3 cut(s) 212, 782, 785
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 3 cut(s) 108, 180, 651
TspGWI ACGGA 1 cut(s) 840
TspRI CASTG 3 cut(s) 748, 754, 1003
Van91I CCANNNNNTGG 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 965
XapI RAATTY 2 cut(s) 65, 98
XbaI TCTAGA 1 cut(s) 605
XceI RCATGY 2 cut(s) 407, 1012
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.