Rh2CG422000

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012129
Physical Location & Seq
Reverse (-)
57654003 .. 57656484
2482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG422000.1

Sequence Viewer

Length: 1164 bp
ATGGAAGATTTCTCGGAGCAGAGTGGATTTGATGACAACCAAATCGGTTATGAAGGGGAGGAGGAACAATTTGAACAGCCGCAAGAGCAGCAATTCGATTCCGGGCGTGAGTTTGAGGCGAACCATAACGTAGATAGTGAAGGCAATGAGTTTAGGGAGTCTTCATTCAGGGCTGATTCGGCTGCGGGAAAACTATTTGTAGGAGGCGTTTCATGGGAGACCACTGAAGAAACCTTTACTAATTACTTCAGCAAATATGGAGAAATAGCAGATTCTGTTATAATGTTAGACAAACATACTGGGAGGCCAAGGGGGTTTGGATTCGTAACATTTTCTGATCCAGTGGCTGCTGATGCAGTTTTGGAGGAAGAACATGTCATAGATGGCAGAGTGGTGGAGGTGAAGAGGACCGTTCCCAGGGAGGATATGGGATTTAAGGGGGGATCAAAAAGAAAGAAGATTTTTGTTGGTGGGATACCAACGTCTTTGAATGATGAGGAATTGGGGGAATATTTCTCTACATTTGGTAGCATTGTTGAACACCAGATTATGGTAGATCACAAAACTGGGAGGTCTAGAGGATTTGGATTTGTCACTTTTGAGAATGAAGATGCTCTTGACAAGGTATTCTCAGAAGGAAAAATACATGAACTTGGAGGCAAACAGGTGGAAATAAAAAGGGCTGAACCTAAAAGGCCTGGTGGTGATTTTAGTGGTAGTGCTGCAAGGTCGTATGGTGGCTTAGGTGGCCCTGCAGCTGGATATGGTGGATATAATTCTGGAGGTCGTTTCAACGGAAAAATGGGCAGGGGCTATGGTGGACCTGGTGGTTATGGCGCTGCCTATGGGAATTACAACAATTATGCTGGAAATTATGCTGCGAACTATGCAGGTTTCTATGGTGGCTATGGTGGATATGGATATGGTTTTGGGTATGGCGGACCCATGTATGGCAATGCTGGATATGGAGCGGGTGGTTATGGCATGCCTGGTGGTTATGGTGCTCCTACTGGTTATGGTGGTGGTAAAGGGTATGGAAGTGGTTCTGCTGGTCGGGGTCAAGGTAGGGGTCGGGGGCGCGGTGGTAGTAGTTATGATGCTGGTAGAGGATATGATAGGAGTGGTGATTCTACAACTGGAAGATATCATCCTTATCAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 ko03040 map03015 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

387

Amino Acids

41.28

Weight (kDa)

5.14

Isoelectric Point (pI)

34.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 65 - 130 2.1e-14 RNA recognition motif
RRM_7 PF16367 152 - 213 5.1e-06 RNA recognition motif
RRM_1 PF00076 154 - 222 7.7e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012129)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17640 AT1G17640 AT1G17640
fragaria_vesca FvH4_6g33670
malus_domestica MD09G1191800.v1.1
prunus_persica Prupe.3G048000_v2.0.a1
pyrus_communis pycom07g10230 pycom09g10830
rosa_chinensis RchiOBHm_Chr2g0143581
rosa_laevigata RLG00000020048
rosa_multiflora Rmu_ssc0000231.1_g000013
rosa_roxburghii Rroxscaffold_2G00101640
rosa_rugosa Rorug02G0384000 Rorug02G0384000
rosa_samantha Rh2AG435900 Rh2BG443500 Rh2CG422000 Rh2DG453900
rosa_wichuraiana Rw2G035520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 281
Acc36I ACCTGC 1 cut(s) 881
AccB7I CCANNNNNTGG 1 cut(s) 550
AccBSI CCGCTC 1 cut(s) 971
AccII CGCG 1 cut(s) 1080
AciI CCGC 5 cut(s) 80, 185, 939, 971, 1080
AclWI GGATC 2 cut(s) 332, 451
AcuI CTGAAG 2 cut(s) 232, 246
AfiI CCNNNNNNNGG 4 cut(s) 417, 550, 758, 950
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 4 cut(s) 74, 490, 539, 793
AjnI CCWGG 4 cut(s) 416, 697, 823, 988
AluBI AGCT 1 cut(s) 758
AluI AGCT 1 cut(s) 758
Alw21I GWGCWC 1 cut(s) 1006
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 2 cut(s) 332, 451
AlwNI CAGNNNCTG 2 cut(s) 275, 347
AoxI GGCC 3 cut(s) 305, 695, 748
ApeKI GCWGC 7 cut(s) 88, 182, 347, 722, 755, 839, 878
Asp700I GAANNNNTTC 1 cut(s) 1042
AspLEI GCGC 2 cut(s) 839, 1080
AspS9I GGNCC 4 cut(s) 408, 749, 821, 941
AsuC2I CCSGG 1 cut(s) 103
AsuHPI GGTGA 3 cut(s) 412, 716, 1136
AvaII GGWCC 3 cut(s) 408, 821, 941
BaeI ACNNNNGTAYC 2 cut(s) 467, 500
BarI GAAGNNNNNNTAC 2 cut(s) 627, 659
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 1006
BbvI GCAGC 7 cut(s) 100, 169, 334, 709, 767, 826, 865
BccI CCATC 1 cut(s) 377
BciT130I CCWGG 4 cut(s) 418, 699, 825, 990
BciVI GTATCC 1 cut(s) 468
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 1 cut(s) 576
BfmI CTRYAG 1 cut(s) 753
BfoI RGCGCY 1 cut(s) 840
BfuAI ACCTGC 1 cut(s) 881
BfuI GTATCC 1 cut(s) 468
BisI GCNGC 8 cut(s) 80, 89, 183, 348, 723, 756, 840, 879
BlsI GCNGC 8 cut(s) 81, 90, 184, 349, 724, 757, 841, 880
Bme1390I CCNGG 5 cut(s) 103, 418, 699, 825, 990
Bme18I GGWCC 3 cut(s) 408, 821, 941
BmgT120I GGNCC 4 cut(s) 408, 749, 821, 941
BmiI GGNNCC 1 cut(s) 943
BmrFI CCNGG 5 cut(s) 103, 418, 699, 825, 990
BmrI ACTGGG 2 cut(s) 309, 576
BmsI GCATC 3 cut(s) 343, 601, 1087
BmuI ACTGGG 2 cut(s) 309, 576
BpiI GAAGAC 1 cut(s) 153
BpmI CTGGAG 1 cut(s) 801
Bpu10I CCTNAGC 1 cut(s) 742
BpuMI CCSGG 1 cut(s) 103
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 3 cut(s) 308, 416, 417
Bsc4I CCNNNNNNNGG 4 cut(s) 417, 550, 758, 950
Bse1I ACTGG 5 cut(s) 304, 341, 571, 1015, 1141
Bse3DI GCAATG 2 cut(s) 151, 961
BseBI CCWGG 4 cut(s) 418, 699, 825, 990
BseDI CCNNGG 3 cut(s) 308, 416, 417
BseGI GGATG 1 cut(s) 1147
BseLI CCNNNNNNNGG 4 cut(s) 417, 550, 758, 950
BseMI GCAATG 2 cut(s) 151, 961
BseMII CTCAG 1 cut(s) 645
BseNI ACTGG 5 cut(s) 304, 341, 571, 1015, 1141
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 7 cut(s) 100, 169, 334, 709, 767, 826, 865
Bsh1236I CGCG 1 cut(s) 1080
BshFI GGCC 3 cut(s) 307, 697, 750
BsiHKAI GWGCWC 1 cut(s) 1006
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 4 cut(s) 417, 550, 758, 950
BsmAI GTCTC 1 cut(s) 212
BsnI GGCC 3 cut(s) 307, 697, 750
Bso31I GGTCTC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 1006
Bsp143I GATC 3 cut(s) 337, 443, 556
BspACI CCGC 5 cut(s) 80, 185, 939, 971, 1080
BspANI GGCC 3 cut(s) 307, 697, 750
BspCNI CTCAG 1 cut(s) 644
BspFNI CGCG 1 cut(s) 1080
BspLI GGNNCC 1 cut(s) 943
BspMAI CTGCAG 1 cut(s) 757
BspMI ACCTGC 1 cut(s) 881
BspPI GGATC 2 cut(s) 332, 451
BspTNI GGTCTC 1 cut(s) 212
BsrBI CCGCTC 1 cut(s) 971
BsrDI GCAATG 2 cut(s) 151, 961
BsrI ACTGG 5 cut(s) 304, 341, 571, 1015, 1141
BssECI CCNNGG 3 cut(s) 308, 416, 417
BssMI GATC 3 cut(s) 337, 443, 556
BssT1I CCWWGG 1 cut(s) 308
Bst2UI CCWGG 4 cut(s) 418, 699, 825, 990
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 986
BstDEI CTNAG 2 cut(s) 631, 742
BstF5I GGATG 1 cut(s) 1147
BstFNI CGCG 1 cut(s) 1080
BstH2I RGCGCY 1 cut(s) 840
BstHHI GCGC 2 cut(s) 839, 1080
BstKTI GATC 3 cut(s) 340, 446, 559
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 3 cut(s) 337, 443, 556
BstMWI GCNNNNNNNGC 6 cut(s) 85, 88, 179, 353, 747, 887
BstNI CCWGG 4 cut(s) 418, 699, 825, 990
BstNSI RCATGY 2 cut(s) 377, 988
BstSCI CCNGG 5 cut(s) 101, 416, 697, 823, 988
BstSFI CTRYAG 1 cut(s) 753
BstUI CGCG 1 cut(s) 1080
BstV1I GCAGC 7 cut(s) 100, 169, 334, 709, 767, 826, 865
BstV2I GAAGAC 1 cut(s) 153
BsuI GTATCC 1 cut(s) 468
BsuRI GGCC 3 cut(s) 307, 697, 750
BtsCI GGATG 1 cut(s) 1147
BtsIMutI CAGTG 2 cut(s) 222, 348
BveI ACCTGC 1 cut(s) 881
Cac8I GCNNGC 1 cut(s) 986
CaiI CAGNNNCTG 2 cut(s) 275, 347
CfoI GCGC 2 cut(s) 839, 1080
Cfr13I GGNCC 4 cut(s) 408, 749, 821, 941
CsiI ACCWGGT 1 cut(s) 823
CviAII CATG 5 cut(s) 213, 374, 647, 946, 985
DdeI CTNAG 2 cut(s) 631, 742
DpnI GATC 3 cut(s) 339, 445, 558
DpnII GATC 3 cut(s) 337, 443, 556
Eam1104I CTCTTC 1 cut(s) 398
EarI CTCTTC 1 cut(s) 398
EciI GGCGGA 1 cut(s) 954
Eco130I CCWWGG 1 cut(s) 308
Eco147I AGGCCT 1 cut(s) 697
Eco31I GGTCTC 1 cut(s) 212
Eco32I GATATC 1 cut(s) 1145
Eco47I GGWCC 3 cut(s) 408, 821, 941
Eco57I CTGAAG 2 cut(s) 232, 246
EcoRII CCWGG 4 cut(s) 416, 697, 823, 988
EcoRV GATATC 1 cut(s) 1145
EcoT14I CCWWGG 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 5 cut(s) 216, 377, 650, 949, 988
FalI AAGNNNNNCTT 2 cut(s) 600, 632
FatI CATG 5 cut(s) 212, 373, 646, 945, 984
FauI CCCGC 2 cut(s) 178, 964
Fnu4HI GCNGC 8 cut(s) 80, 89, 183, 348, 723, 756, 840, 879
FokI GGATG 1 cut(s) 1134
Fsp4HI GCNGC 8 cut(s) 80, 89, 183, 348, 723, 756, 840, 879
FspBI CTAG 1 cut(s) 576
GlaI GCGC 2 cut(s) 838, 1079
GluI GCNGC 8 cut(s) 80, 89, 183, 348, 723, 756, 840, 879
GsuI CTGGAG 1 cut(s) 801
HaeII RGCGCY 1 cut(s) 840
HaeIII GGCC 3 cut(s) 307, 697, 750
HapII CCGG 1 cut(s) 102
HhaI GCGC 2 cut(s) 839, 1080
Hin1II CATG 5 cut(s) 216, 377, 650, 949, 988
Hin6I GCGC 2 cut(s) 837, 1078
HinP1I GCGC 2 cut(s) 837, 1078
HinfI GANTC 6 cut(s) 98, 158, 176, 272, 321, 1127
HpaII CCGG 1 cut(s) 102
HphI GGTGA 3 cut(s) 412, 716, 1136
Hpy166II GTNNAC 1 cut(s) 821
Hpy188I TCNGA 3 cut(s) 16, 337, 634
Hpy188III TCNNGA 3 cut(s) 576, 617, 780
Hpy8I GTNNAC 1 cut(s) 821
HpyAV CCTTC 3 cut(s) 47, 134, 629
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 2 cut(s) 129, 482
HpyCH4V TGCA 4 cut(s) 356, 725, 755, 890
HpyF10VI GCNNNNNNNGC 6 cut(s) 85, 88, 179, 353, 747, 887
HpyF3I CTNAG 2 cut(s) 631, 742
HpySE526I ACGT 2 cut(s) 129, 482
Hsp92II CATG 5 cut(s) 216, 377, 650, 949, 988
HspAI GCGC 2 cut(s) 837, 1078
Kzo9I GATC 3 cut(s) 337, 443, 556
LmnI GCTCC 3 cut(s) 16, 968, 1009
Lsp1109I GCAGC 7 cut(s) 100, 169, 334, 709, 767, 826, 865
LweI GCATC 3 cut(s) 343, 601, 1087
MabI ACCWGGT 1 cut(s) 823
MaeI CTAG 1 cut(s) 576
MaeII ACGT 2 cut(s) 129, 482
MaeIII GTNAC 2 cut(s) 325, 592
MalI GATC 3 cut(s) 339, 445, 558
MbiI CCGCTC 1 cut(s) 971
MboI GATC 3 cut(s) 337, 443, 556
MboII GAAGA 8 cut(s) 17, 153, 239, 380, 415, 469, 620, 1152
MhlI GDGCHC 1 cut(s) 1006
MluCI AATT 9 cut(s) 68, 92, 241, 500, 775, 850, 859, 871, 1159
MlyI GAGTC 1 cut(s) 167
MroXI GAANNNNTTC 1 cut(s) 1042
MseI TTAA 1 cut(s) 435
MspA1I CMGCKG 1 cut(s) 758
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 5 cut(s) 103, 418, 699, 825, 990
MvaI CCWGG 4 cut(s) 418, 699, 825, 990
MvnI CGCG 1 cut(s) 1080
MwoI GCNNNNNNNGC 6 cut(s) 85, 88, 179, 353, 747, 887
NciI CCSGG 1 cut(s) 103
NdeII GATC 3 cut(s) 337, 443, 556
NlaIII CATG 5 cut(s) 216, 377, 650, 949, 988
NlaIV GGNNCC 1 cut(s) 943
NmuCI GTSAC 1 cut(s) 592
NspI RCATGY 2 cut(s) 377, 988
PaeI GCATGC 1 cut(s) 988
PasI CCCWGGG 1 cut(s) 417
PceI AGGCCT 1 cut(s) 697
PciI ACATGT 1 cut(s) 373
PdmI GAANNNNTTC 1 cut(s) 1042
PfeI GAWTC 5 cut(s) 98, 176, 272, 321, 1127
PflMI CCANNNNNTGG 1 cut(s) 550
PkrI GCNGC 8 cut(s) 81, 90, 184, 349, 724, 757, 841, 880
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PscI ACATGT 1 cut(s) 373
PsiI TTATAA 1 cut(s) 281
Psp6I CCWGG 4 cut(s) 416, 697, 823, 988
PspGI CCWGG 4 cut(s) 416, 697, 823, 988
PspN4I GGNNCC 1 cut(s) 943
PspPI GGNCC 4 cut(s) 408, 749, 821, 941
PstI CTGCAG 1 cut(s) 757
PstNI CAGNNNCTG 2 cut(s) 275, 347
PvuII CAGCTG 1 cut(s) 758
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 8 cut(s) 80, 89, 183, 348, 723, 756, 840, 879
Sau3AI GATC 3 cut(s) 337, 443, 556
Sau96I GGNCC 4 cut(s) 408, 749, 821, 941
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 5 cut(s) 103, 418, 699, 825, 990
SduI GDGCHC 1 cut(s) 1006
SexAI ACCWGGT 1 cut(s) 823
SfaNI GCATC 3 cut(s) 343, 601, 1087
SfcI CTRYAG 1 cut(s) 753
SinI GGWCC 3 cut(s) 408, 821, 941
SphI GCATGC 1 cut(s) 988
Sse9I AATT 9 cut(s) 68, 92, 241, 500, 775, 850, 859, 871, 1159
SseBI AGGCCT 1 cut(s) 697
SsiI CCGC 5 cut(s) 80, 185, 939, 971, 1080
SspI AATATT 1 cut(s) 512
SspMI CTAG 1 cut(s) 576
StuI AGGCCT 1 cut(s) 697
StyD4I CCNGG 5 cut(s) 101, 416, 697, 823, 988
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 2 cut(s) 132, 485
TaqI TCGA 1 cut(s) 96
TasI AATT 9 cut(s) 68, 92, 241, 500, 775, 850, 859, 871, 1159
TauI GCSGC 1 cut(s) 82
TfiI GAWTC 5 cut(s) 98, 176, 272, 321, 1127
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 2 cut(s) 229, 348
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 7 cut(s) 88, 182, 347, 722, 755, 839, 878
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 5 cut(s) 66, 153, 201, 621, 663
TspGWI ACGGA 1 cut(s) 810
TspRI CASTG 2 cut(s) 229, 348
Van91I CCANNNNNTGG 1 cut(s) 550
VpaK11BI GGWCC 3 cut(s) 408, 821, 941
XbaI TCTAGA 1 cut(s) 575
XceI RCATGY 2 cut(s) 377, 988
XcmI CCANNNNNNNNNTGG 1 cut(s) 424
XmnI GAANNNNTTC 1 cut(s) 1042
XspI CTAG 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.