FvH4_6g34100

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015665
Physical Location & Seq
Reverse (-)
26943897 .. 26944322
426 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34100.t1

Sequence Viewer

Length: 426 bp
ATGGAGAATTACAGATCCAAGTCCTGTAGAGATGAGAGGAACATGCAGATGGAGGTCTACTATGGAGGCAGCAGAGATGAAAGGAATATGCAGATGGATGTCTACTATGGAGGCAAGGCAGCTCCACCACCACCAACAAGCATGAGAGATCTCAAGAGTTACAGTGTCAACTATGGTGGCTCTGGTAGTTCTGGTGCATACCCAAATCATCAGATTGTTAAAGATGTCAAGATCAAGAAAGGGAAGAGCAGTTTGGGGACATCCACTTCAAAGATCTGGAGCTTGGCTGACCCAGAATTGCAGAGGAAGAAGAGGGTTGCTGGATATAAAGTCTATTCAGCTGAGGAGAAGATGAAAGGGTCTTTCAAGAAGAGCTTCAAGTGGATCAAGAGCACCTACACTCAAGTAGTCTATGGCTGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

142

Amino Acids

16.13

Weight (kDa)

9.83

Isoelectric Point (pI)

22.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 96 - 139 3.8e-23 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015665)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34100
malus_domestica MD09G1189600.v1.1 MD17G1172800.v1.1
prunus_persica Prupe.3G045700_v2.0.a1
pyrus_communis pycom09g10640 pycom17g17110
rosa_chinensis RchiOBHm_Chr2g0144351
rosa_laevigata RLG00000020076
rosa_multiflora Rmu_sc0003475.1_g000020
rosa_roxburghii Rroxscaffold_2G00101360
rosa_rugosa Rorug02G0386100
rosa_samantha Rh2AG438300 Rh2BG448900 Rh2CG425300 Rh2DG458500
rosa_wichuraiana Rw2G035850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 57, 102
AclWI GGATC 2 cut(s) 9, 392
AgsI TTSAA 3 cut(s) 270, 367, 379
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AluBI AGCT 4 cut(s) 122, 282, 341, 375
AluI AGCT 4 cut(s) 122, 282, 341, 375
Alw21I GWGCWC 1 cut(s) 395
AlwI GGATC 2 cut(s) 9, 392
ApeKI GCWGC 2 cut(s) 69, 119
Asp700I GAANNNNTTC 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 395
BbvCI CCTCAGC 1 cut(s) 342
BbvI GCAGC 2 cut(s) 81, 131
BccI CCATC 2 cut(s) 43, 88
BfmI CTRYAG 1 cut(s) 25
BglII AGATCT 2 cut(s) 148, 273
BisI GCNGC 2 cut(s) 70, 120
BlsI GCNGC 2 cut(s) 71, 121
BpmI CTGGAG 1 cut(s) 298
Bpu10I CCTNAGC 1 cut(s) 342
BpuEI CTTGAG 2 cut(s) 137, 387
BseGI GGATG 2 cut(s) 103, 260
BseMII CTCAG 1 cut(s) 333
BseRI GAGGAG 1 cut(s) 359
BseXI GCAGC 2 cut(s) 81, 131
BsiHKAI GWGCWC 1 cut(s) 395
BslFI GGGAC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 395
Bsp143I GATC 5 cut(s) 14, 148, 231, 273, 384
BspCNI CTCAG 1 cut(s) 334
BspPI GGATC 2 cut(s) 9, 392
BspQI GCTCTTC 2 cut(s) 239, 365
BssMI GATC 5 cut(s) 14, 148, 231, 273, 384
Bst4CI ACNGT 1 cut(s) 164
Bst6I CTCTTC 3 cut(s) 239, 305, 365
BstC8I GCNNGC 1 cut(s) 419
BstDEI CTNAG 1 cut(s) 342
BstF5I GGATG 2 cut(s) 103, 260
BstKTI GATC 5 cut(s) 17, 151, 234, 276, 387
BstMBI GATC 5 cut(s) 14, 148, 231, 273, 384
BstNSI RCATGY 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 2 cut(s) 81, 131
BstX2I RGATCY 3 cut(s) 14, 148, 273
BstYI RGATCY 3 cut(s) 14, 148, 273
BtsCI GGATG 2 cut(s) 103, 260
BtsIMutI CAGTG 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 419
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CviAII CATG 2 cut(s) 43, 142
CviJI RGCY 7 cut(s) 122, 180, 282, 287, 341, 375, 417
CviKI_1 RGCY 7 cut(s) 122, 180, 282, 287, 341, 375, 417
DdeI CTNAG 1 cut(s) 342
DpnI GATC 5 cut(s) 16, 150, 233, 275, 386
DpnII GATC 5 cut(s) 14, 148, 231, 273, 384
Eam1104I CTCTTC 3 cut(s) 239, 305, 365
EarI CTCTTC 3 cut(s) 239, 305, 365
FaeI CATG 2 cut(s) 46, 145
FaiI YATR 9 cut(s) 44, 63, 89, 108, 143, 174, 199, 327, 414
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 1 cut(s) 271
FatI CATG 2 cut(s) 42, 141
FblI GTMKAC 2 cut(s) 57, 102
Fnu4HI GCNGC 2 cut(s) 70, 120
FokI GGATG 2 cut(s) 110, 247
Fsp4HI GCNGC 2 cut(s) 70, 120
GluI GCNGC 2 cut(s) 70, 120
GsuI CTGGAG 1 cut(s) 298
Hin1II CATG 2 cut(s) 46, 145
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
Hpy166II GTNNAC 3 cut(s) 58, 103, 169
Hpy188I TCNGA 1 cut(s) 213
Hpy188III TCNNGA 6 cut(s) 154, 229, 235, 277, 367, 388
Hpy8I GTNNAC 3 cut(s) 58, 103, 169
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4V TGCA 4 cut(s) 46, 91, 197, 301
HpyF3I CTNAG 1 cut(s) 342
Hsp92II CATG 2 cut(s) 46, 145
Kzo9I GATC 5 cut(s) 14, 148, 231, 273, 384
LguI GCTCTTC 2 cut(s) 239, 365
LmnI GCTCC 2 cut(s) 127, 279
LpnPI CCDG 7 cut(s) 37, 168, 177, 262, 306, 306, 403
Lsp1109I GCAGC 2 cut(s) 81, 131
MaeIII GTNAC 1 cut(s) 158
MalI GATC 5 cut(s) 16, 150, 233, 275, 386
MboI GATC 5 cut(s) 14, 148, 231, 273, 384
MboII GAAGA 5 cut(s) 256, 319, 322, 361, 382
MflI RGATCY 3 cut(s) 14, 148, 273
MhlI GDGCHC 1 cut(s) 395
MluCI AATT 2 cut(s) 7, 296
MnlI CCTC 7 cut(s) 30, 46, 59, 104, 297, 306, 337
MroXI GAANNNNTTC 1 cut(s) 374
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 341
NdeII GATC 5 cut(s) 14, 148, 231, 273, 384
NlaIII CATG 2 cut(s) 46, 145
NspI RCATGY 1 cut(s) 46
PciSI GCTCTTC 2 cut(s) 239, 365
PdmI GAANNNNTTC 1 cut(s) 374
PkrI GCNGC 2 cut(s) 71, 121
PsuI RGATCY 3 cut(s) 14, 148, 273
PvuII CAGCTG 1 cut(s) 341
RseI CAYNNNNRTG 1 cut(s) 47
SapI GCTCTTC 2 cut(s) 239, 365
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 2 cut(s) 70, 120
Sau3AI GATC 5 cut(s) 14, 148, 231, 273, 384
SduI GDGCHC 1 cut(s) 395
SetI ASST 6 cut(s) 57, 124, 284, 343, 377, 398
SfcI CTRYAG 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 47
SmlI CTYRAG 2 cut(s) 152, 402
SmoI CTYRAG 2 cut(s) 152, 402
Sse9I AATT 2 cut(s) 7, 296
TaaI ACNGT 1 cut(s) 164
TasI AATT 2 cut(s) 7, 296
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 169
TseI GCWGC 2 cut(s) 69, 119
TspDTI ATGAA 2 cut(s) 93, 368
TspRI CASTG 1 cut(s) 169
XceI RCATGY 1 cut(s) 46
XmiI GTMKAC 2 cut(s) 57, 102
XmnI GAANNNNTTC 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.