MD17G1172800.v1.1

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0015665
Physical Location & Seq
Forward (+)
17830509 .. 17830889
381 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1172800.v1.1.491

Sequence Viewer

Length: 381 bp
ATGGAGGATTTCAGATCCAAGTCATGCAGAGACGGGAGAGACGGGAGGATGCAGATGGAGGTCTACTATGGAGGGAAGCCAGGTGCTCCTCCAGCAAGCATGCAGGATCTCAGAAGTTACAGCTCATATTATGCAGGCTCTTGTGTTTCCCAGCCAAACAACCACCAGATGGTGGTGAAGGATGGGAAGATGAAGAAAGGGAAGAGCAGCCTTGGGACTGCCTCGAAGACCTGGAGCTTGAGTGATCCCGAGTTGCAGAGGAAGAAGCGGGTTGCTGGGTACAAAGTTTACACTGCAGAGGAGAAGATGAAAGGGTCCCTGAGGAAGAGCTTCAAGTGGATCAAGAACACCTGCACCCAAGTAGTCTACGGATGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

127

Amino Acids

14.33

Weight (kDa)

9.88

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 81 - 124 1.8e-25 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015665)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34100
malus_domestica MD09G1189600.v1.1 MD17G1172800.v1.1
prunus_persica Prupe.3G045700_v2.0.a1
pyrus_communis pycom09g10640 pycom17g17110
rosa_chinensis RchiOBHm_Chr2g0144351
rosa_laevigata RLG00000020076
rosa_multiflora Rmu_sc0003475.1_g000020
rosa_roxburghii Rroxscaffold_2G00101360
rosa_rugosa Rorug02G0386100
rosa_samantha Rh2AG438300 Rh2BG448900 Rh2CG425300 Rh2DG458500
rosa_wichuraiana Rw2G035850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 359
Acc36I ACCTGC 1 cut(s) 359
AccB7I CCANNNNNTGG 2 cut(s) 169, 172
AccI GTMKAC 2 cut(s) 63, 366
AciI CCGC 1 cut(s) 268
AclWI GGATC 4 cut(s) 9, 114, 239, 347
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 2 cut(s) 169, 172
AgsI TTSAA 1 cut(s) 334
AjnI CCWGG 2 cut(s) 79, 230
AluBI AGCT 3 cut(s) 123, 237, 330
AluI AGCT 3 cut(s) 123, 237, 330
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 2 cut(s) 24, 33
AlwI GGATC 4 cut(s) 9, 114, 239, 347
Ama87I CYCGRG 1 cut(s) 248
ApeKI GCWGC 1 cut(s) 207
Asp700I GAANNNNTTC 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 248
AvaII GGWCC 1 cut(s) 315
AxyI CCTNAGG 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 219
BccI CCATC 4 cut(s) 49, 163, 176, 366
BciT130I CCWGG 2 cut(s) 81, 232
BcoDI GTCTC 2 cut(s) 24, 33
BfmI CTRYAG 1 cut(s) 294
BfuAI ACCTGC 1 cut(s) 359
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
Bme1390I CCNGG 2 cut(s) 81, 232
Bme18I GGWCC 1 cut(s) 315
BmeT110I CYCGRG 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 2 cut(s) 316, 317
BmrFI CCNGG 2 cut(s) 81, 232
BmsI GCATC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 233
BpmI CTGGAG 2 cut(s) 75, 253
BpuEI CTTGAG 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 211
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 172
Bse21I CCTNAGG 1 cut(s) 320
BseBI CCWGG 2 cut(s) 81, 232
BseDI CCNNGG 1 cut(s) 211
BseGI GGATG 3 cut(s) 54, 187, 377
BseLI CCNNNNNNNGG 2 cut(s) 169, 172
BseMII CTCAG 2 cut(s) 124, 311
BseRI GAGGAG 2 cut(s) 78, 314
BseXI GCAGC 1 cut(s) 219
BseYI CCCAGC 2 cut(s) 150, 275
BsgI GTGCAG 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 88
BsiHKCI CYCGRG 1 cut(s) 248
BslFI GGGAC 2 cut(s) 229, 301
BslI CCNNNNNNNGG 2 cut(s) 169, 172
BsmAI GTCTC 2 cut(s) 24, 33
BsmBI CGTCTC 2 cut(s) 24, 33
BsmFI GGGAC 2 cut(s) 229, 301
BsoBI CYCGRG 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 4 cut(s) 14, 106, 244, 339
BspACI CCGC 1 cut(s) 268
BspCNI CTCAG 2 cut(s) 123, 312
BspLI GGNNCC 2 cut(s) 316, 317
BspMAI CTGCAG 1 cut(s) 298
BspMI ACCTGC 1 cut(s) 359
BspPI GGATC 4 cut(s) 9, 114, 239, 347
BspQI GCTCTTC 2 cut(s) 197, 320
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 4 cut(s) 14, 106, 244, 339
BssT1I CCWWGG 1 cut(s) 211
Bst2UI CCWGG 2 cut(s) 81, 232
Bst6I CTCTTC 2 cut(s) 197, 320
BstC8I GCNNGC 3 cut(s) 97, 101, 136
BstDEI CTNAG 2 cut(s) 110, 320
BstF5I GGATG 3 cut(s) 54, 187, 377
BstKTI GATC 4 cut(s) 17, 109, 247, 342
BstMAI GTCTC 2 cut(s) 24, 33
BstMBI GATC 4 cut(s) 14, 106, 244, 339
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 2 cut(s) 81, 232
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 2 cut(s) 79, 230
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 219
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 2 cut(s) 14, 106
BstYI RGATCY 2 cut(s) 14, 106
Bsu36I CCTNAGG 1 cut(s) 320
BtsCI GGATG 3 cut(s) 54, 187, 377
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 291
BveI ACCTGC 1 cut(s) 359
Cac8I GCNNGC 3 cut(s) 97, 101, 136
Cfr13I GGNCC 1 cut(s) 315
Csp6I GTAC 1 cut(s) 280
CviAII CATG 2 cut(s) 24, 100
CviJI RGCY 7 cut(s) 79, 123, 138, 154, 210, 237, 330
CviKI_1 RGCY 7 cut(s) 79, 123, 138, 154, 210, 237, 330
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 2 cut(s) 110, 320
DpnI GATC 4 cut(s) 16, 108, 246, 341
DpnII GATC 4 cut(s) 14, 106, 244, 339
Eam1104I CTCTTC 2 cut(s) 197, 320
EarI CTCTTC 2 cut(s) 197, 320
Eco130I CCWWGG 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 315
Eco81I CCTNAGG 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 315
EcoRII CCWGG 2 cut(s) 79, 230
EcoT14I CCWWGG 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 211
Esp3I CGTCTC 2 cut(s) 24, 33
FaeI CATG 2 cut(s) 27, 103
FaiI YATR 5 cut(s) 25, 69, 101, 127, 132
FaqI GGGAC 2 cut(s) 229, 301
FatI CATG 2 cut(s) 23, 99
FauI CCCGC 1 cut(s) 261
FblI GTMKAC 2 cut(s) 63, 366
Fnu4HI GCNGC 1 cut(s) 208
FokI GGATG 2 cut(s) 61, 194
Fsp4HI GCNGC 1 cut(s) 208
GluI GCNGC 1 cut(s) 208
GsaI CCCAGC 2 cut(s) 154, 279
GsuI CTGGAG 2 cut(s) 75, 253
Hin1II CATG 2 cut(s) 27, 103
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 3 cut(s) 64, 289, 367
Hpy188I TCNGA 2 cut(s) 14, 113
Hpy188III TCNNGA 2 cut(s) 248, 343
Hpy8I GTNNAC 3 cut(s) 64, 289, 367
HpyAV CCTTC 1 cut(s) 172
HpyCH4V TGCA 7 cut(s) 27, 52, 103, 134, 256, 296, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 110, 320
Hsp92II CATG 2 cut(s) 27, 103
KflI GGGWCCC 1 cut(s) 315
Kzo9I GATC 4 cut(s) 14, 106, 244, 339
LguI GCTCTTC 2 cut(s) 197, 320
LmnI GCTCC 2 cut(s) 91, 234
Lsp1109I GCAGC 1 cut(s) 219
LweI GCATC 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 116
MalI GATC 4 cut(s) 16, 108, 246, 341
MboI GATC 4 cut(s) 14, 106, 244, 339
MboII GAAGA 7 cut(s) 199, 205, 214, 238, 274, 316, 337
MflI RGATCY 2 cut(s) 14, 106
MhlI GDGCHC 1 cut(s) 88
MnlI CCTC 8 cut(s) 39, 52, 65, 99, 232, 252, 292, 315
MroXI GAANNNNTTC 1 cut(s) 329
MspR9I CCNGG 2 cut(s) 81, 232
MvaI CCWGG 2 cut(s) 81, 232
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 4 cut(s) 14, 106, 244, 339
NlaIII CATG 2 cut(s) 27, 103
NlaIV GGNNCC 2 cut(s) 316, 317
NspI RCATGY 1 cut(s) 103
PaeI GCATGC 1 cut(s) 103
PaqCI CACCTGC 1 cut(s) 359
PciSI GCTCTTC 2 cut(s) 197, 320
PdmI GAANNNNTTC 1 cut(s) 329
PflMI CCANNNNNTGG 2 cut(s) 169, 172
PkrI GCNGC 1 cut(s) 209
PpuMI RGGWCCY 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 315
Psp6I CCWGG 2 cut(s) 79, 230
PspFI CCCAGC 2 cut(s) 150, 275
PspGI CCWGG 2 cut(s) 79, 230
PspN4I GGNNCC 2 cut(s) 316, 317
PspPI GGNCC 1 cut(s) 315
PspPPI RGGWCCY 1 cut(s) 315
PstI CTGCAG 1 cut(s) 298
PsuI RGATCY 2 cut(s) 14, 106
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SapI GCTCTTC 2 cut(s) 197, 320
SatI GCNGC 1 cut(s) 208
Sau3AI GATC 4 cut(s) 14, 106, 244, 339
Sau96I GGNCC 1 cut(s) 315
ScrFI CCNGG 2 cut(s) 81, 232
SduI GDGCHC 1 cut(s) 88
SetI ASST 7 cut(s) 63, 85, 125, 233, 239, 332, 353
SfaNI GCATC 1 cut(s) 39
SfcI CTRYAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
SphI GCATGC 1 cut(s) 103
SsiI CCGC 1 cut(s) 268
StyD4I CCNGG 2 cut(s) 79, 230
StyI CCWWGG 1 cut(s) 211
TaqI TCGA 1 cut(s) 224
TscAI CASTG 1 cut(s) 298
TseI GCWGC 1 cut(s) 207
TspDTI ATGAA 2 cut(s) 206, 323
TspRI CASTG 1 cut(s) 298
Van91I CCANNNNNTGG 2 cut(s) 169, 172
VpaK11BI GGWCC 1 cut(s) 315
XceI RCATGY 1 cut(s) 103
XmiI GTMKAC 2 cut(s) 63, 366
XmnI GAANNNNTTC 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.