RLG00000020076

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015665
Physical Location & Seq
Reverse (-)
60784642 .. 60785079
438 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020076

Sequence Viewer

Length: 438 bp
ATGGAGAATTACAGATCCAAGTCCTGTAGAGATGGGAGGAACATGCAGAAGGAGGTCTACTATGGAGGCAGCAGAGATGAGAGGAATATGCAGATGGAGGTCTACTATGGAGGCAAGGCAGCTCCACCACCACCACCACCACCACCGACAAGCATGAGAGATCTCAAGAGTTACAGTGTCAACTATGCTGGCTCTGGTACTTCTGGTGCATACCCAAATAATCAGATTGTTAAAGATGTGAAGATCAAGAAAGGCAAGAGCAGCTTGGGGGCATCCACATCAAAGATCTGGAGCTTGGCTGACCCAGAGTTGCAGAGGAAGAAGAGGGTTGCTGGATACAAAGTCTATTCAGCTGAGGAGAAGGTCAAGGGGTCTTTCAAAAAGAGCTTTAAGTGGATTAAGAGCACCTACACCCAAGTAGTCTATGGCTGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

146

Amino Acids

16.4

Weight (kDa)

9.92

Isoelectric Point (pI)

23.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 100 - 143 3.8e-23 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015665)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34100
malus_domestica MD09G1189600.v1.1 MD17G1172800.v1.1
prunus_persica Prupe.3G045700_v2.0.a1
pyrus_communis pycom09g10640 pycom17g17110
rosa_chinensis RchiOBHm_Chr2g0144351
rosa_laevigata RLG00000020076
rosa_multiflora Rmu_sc0003475.1_g000020
rosa_roxburghii Rroxscaffold_2G00101360
rosa_rugosa Rorug02G0386100
rosa_samantha Rh2AG438300 Rh2BG448900 Rh2CG425300 Rh2DG458500
rosa_wichuraiana Rw2G035850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 57, 102
AclWI GGATC 1 cut(s) 9
AfaI GTAC 1 cut(s) 199
AgsI TTSAA 1 cut(s) 379
AluBI AGCT 5 cut(s) 122, 264, 294, 353, 387
AluI AGCT 5 cut(s) 122, 264, 294, 353, 387
Alw21I GWGCWC 1 cut(s) 407
AlwI GGATC 1 cut(s) 9
ApeKI GCWGC 3 cut(s) 69, 119, 261
BarI GAAGNNNNNNTAC 2 cut(s) 41, 73
Bbv12I GWGCWC 1 cut(s) 407
BbvCI CCTCAGC 1 cut(s) 354
BbvI GCAGC 3 cut(s) 81, 131, 273
BccI CCATC 2 cut(s) 26, 88
BciVI GTATCC 1 cut(s) 329
BfmI CTRYAG 1 cut(s) 25
BfuI GTATCC 1 cut(s) 329
BglII AGATCT 2 cut(s) 160, 285
BisI GCNGC 3 cut(s) 70, 120, 262
BlsI GCNGC 3 cut(s) 71, 121, 263
BmsI GCATC 1 cut(s) 281
BpmI CTGGAG 1 cut(s) 310
Bpu10I CCTNAGC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 149
BseGI GGATG 1 cut(s) 272
BseMII CTCAG 1 cut(s) 345
BseRI GAGGAG 1 cut(s) 371
BseXI GCAGC 3 cut(s) 81, 131, 273
BsiHKAI GWGCWC 1 cut(s) 407
Bsp1286I GDGCHC 1 cut(s) 407
Bsp143I GATC 4 cut(s) 14, 160, 243, 285
BspCNI CTCAG 1 cut(s) 346
BspPI GGATC 1 cut(s) 9
BssMI GATC 4 cut(s) 14, 160, 243, 285
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 190, 431
BstDEI CTNAG 1 cut(s) 354
BstF5I GGATG 1 cut(s) 272
BstKTI GATC 4 cut(s) 17, 163, 246, 288
BstMBI GATC 4 cut(s) 14, 160, 243, 285
BstMWI GCNNNNNNNGC 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 3 cut(s) 81, 131, 273
BstX2I RGATCY 3 cut(s) 14, 160, 285
BstYI RGATCY 3 cut(s) 14, 160, 285
BsuI GTATCC 1 cut(s) 329
BtsCI GGATG 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 181
Cac8I GCNNGC 2 cut(s) 190, 431
Csp6I GTAC 1 cut(s) 198
CviAII CATG 2 cut(s) 43, 154
CviJI RGCY 8 cut(s) 122, 192, 264, 294, 299, 353, 387, 429
CviKI_1 RGCY 8 cut(s) 122, 192, 264, 294, 299, 353, 387, 429
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 1 cut(s) 354
DpnI GATC 4 cut(s) 16, 162, 245, 287
DpnII GATC 4 cut(s) 14, 160, 243, 285
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
FaeI CATG 2 cut(s) 46, 157
FaiI YATR 8 cut(s) 44, 63, 89, 108, 155, 186, 211, 426
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FatI CATG 2 cut(s) 42, 153
FblI GTMKAC 2 cut(s) 57, 102
Fnu4HI GCNGC 3 cut(s) 70, 120, 262
FokI GGATG 1 cut(s) 259
Fsp4HI GCNGC 3 cut(s) 70, 120, 262
GluI GCNGC 3 cut(s) 70, 120, 262
GsuI CTGGAG 1 cut(s) 310
Hin1II CATG 2 cut(s) 46, 157
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
Hpy166II GTNNAC 3 cut(s) 58, 103, 181
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 3 cut(s) 166, 247, 289
Hpy8I GTNNAC 3 cut(s) 58, 103, 181
HpyAV CCTTC 2 cut(s) 43, 355
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4V TGCA 4 cut(s) 46, 91, 209, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 261
HpyF3I CTNAG 1 cut(s) 354
Hsp92II CATG 2 cut(s) 46, 157
Kzo9I GATC 4 cut(s) 14, 160, 243, 285
LmnI GCTCC 2 cut(s) 127, 291
LpnPI CCDG 8 cut(s) 37, 174, 180, 189, 274, 318, 318, 415
Lsp1109I GCAGC 3 cut(s) 81, 131, 273
LweI GCATC 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 170
MalI GATC 4 cut(s) 16, 162, 245, 287
MboI GATC 4 cut(s) 14, 160, 243, 285
MboII GAAGA 3 cut(s) 253, 331, 334
MflI RGATCY 3 cut(s) 14, 160, 285
MhlI GDGCHC 1 cut(s) 407
MluCI AATT 1 cut(s) 7
MnlI CCTC 9 cut(s) 30, 46, 59, 75, 91, 104, 309, 318, 349
MseI TTAA 3 cut(s) 231, 390, 399
MspA1I CMGCKG 1 cut(s) 353
MwoI GCNNNNNNNGC 1 cut(s) 261
NdeII GATC 4 cut(s) 14, 160, 243, 285
NlaIII CATG 2 cut(s) 46, 157
NspI RCATGY 1 cut(s) 46
PkrI GCNGC 3 cut(s) 71, 121, 263
PsuI RGATCY 3 cut(s) 14, 160, 285
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
SaqAI TTAA 3 cut(s) 231, 390, 399
SatI GCNGC 3 cut(s) 70, 120, 262
Sau3AI GATC 4 cut(s) 14, 160, 243, 285
SduI GDGCHC 1 cut(s) 407
SetI ASST 9 cut(s) 57, 102, 124, 266, 296, 355, 366, 389, 410
SfaNI GCATC 1 cut(s) 281
SfcI CTRYAG 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 1 cut(s) 7
TaaI ACNGT 1 cut(s) 176
TasI AATT 1 cut(s) 7
Tru1I TTAA 3 cut(s) 231, 390, 399
Tru9I TTAA 3 cut(s) 231, 390, 399
TscAI CASTG 1 cut(s) 181
TseI GCWGC 3 cut(s) 69, 119, 261
TspRI CASTG 1 cut(s) 181
XceI RCATGY 1 cut(s) 46
XcmI CCANNNNNNNNNTGG 1 cut(s) 422
XmiI GTMKAC 2 cut(s) 57, 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.