Rh2DG458500

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015665
Physical Location & Seq
Reverse (-)
66304981 .. 66306514
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG458500.1

Sequence Viewer

Length: 393 bp
ATGGAGAATTACAGATCCAAGTCCTGTAGAGATGGGAGGAACACGCAGATGGAGGTCTACTATGGAGGCAAGGCAGCTGCTCCACCACCACCACCACCACCAACAAGCATGAGAGATCTCAGGAGTTACAGTGTCAACTATACTGGCTCCGGTAGTTCTGGTGCATACCCAAATAATCAGATTGTTAAAGATGTGAAGATCAAGAAAGGCAAGAGCAGCTTGGGGACATCCACGTCAAAGATCTGGAGCTTGGCTGACCCAGAGTTGCAGAGGAAGAAGAGGGTTGCTGGATACAAAGTCTATTCAGCTGAGGAGAAGATGAAAGGGTCTTTCAAAAAAAGCTTTAAGTGGATTAAGAGCACCTACACCCAAGTAGTCTATGGCTGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

130

Amino Acids

14.63

Weight (kDa)

10.03

Isoelectric Point (pI)

28.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 85 - 128 3.2e-23 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015665)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34100
malus_domestica MD09G1189600.v1.1 MD17G1172800.v1.1
prunus_persica Prupe.3G045700_v2.0.a1
pyrus_communis pycom09g10640 pycom17g17110
rosa_chinensis RchiOBHm_Chr2g0144351
rosa_laevigata RLG00000020076
rosa_multiflora Rmu_sc0003475.1_g000020
rosa_roxburghii Rroxscaffold_2G00101360
rosa_rugosa Rorug02G0386100
rosa_samantha Rh2AG438300 Rh2BG448900 Rh2CG425300 Rh2DG458500
rosa_wichuraiana Rw2G035850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 232
AccI GTMKAC 1 cut(s) 57
AclWI GGATC 1 cut(s) 9
AgsI TTSAA 1 cut(s) 334
AjiI CACGTC 1 cut(s) 234
AluBI AGCT 5 cut(s) 77, 219, 249, 308, 342
AluI AGCT 5 cut(s) 77, 219, 249, 308, 342
Alw21I GWGCWC 1 cut(s) 362
AlwI GGATC 1 cut(s) 9
ApeKI GCWGC 3 cut(s) 74, 77, 216
Bbv12I GWGCWC 1 cut(s) 362
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 3 cut(s) 64, 86, 228
BccI CCATC 2 cut(s) 26, 43
BciVI GTATCC 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 25
BfuI GTATCC 1 cut(s) 284
BglII AGATCT 2 cut(s) 115, 240
BisI GCNGC 3 cut(s) 75, 78, 217
BlsI GCNGC 3 cut(s) 76, 79, 218
BmgBI CACGTC 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 148
BpmI CTGGAG 1 cut(s) 265
Bpu10I CCTNAGC 1 cut(s) 309
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bse1I ACTGG 1 cut(s) 148
BseGI GGATG 1 cut(s) 227
BseMII CTCAG 2 cut(s) 133, 300
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 3 cut(s) 64, 86, 228
BsiHKAI GWGCWC 1 cut(s) 362
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 362
Bsp143I GATC 4 cut(s) 14, 115, 198, 240
BspCNI CTCAG 2 cut(s) 132, 301
BspLI GGNNCC 1 cut(s) 148
BspPI GGATC 1 cut(s) 9
BsrI ACTGG 1 cut(s) 148
BssMI GATC 4 cut(s) 14, 115, 198, 240
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 386
BstDEI CTNAG 2 cut(s) 119, 309
BstF5I GGATG 1 cut(s) 227
BstKTI GATC 4 cut(s) 17, 118, 201, 243
BstMBI GATC 4 cut(s) 14, 115, 198, 240
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 3 cut(s) 64, 86, 228
BstX2I RGATCY 3 cut(s) 14, 115, 240
BstYI RGATCY 3 cut(s) 14, 115, 240
BsuI GTATCC 1 cut(s) 284
BtrI CACGTC 1 cut(s) 234
BtsCI GGATG 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 386
CviAII CATG 1 cut(s) 109
CviJI RGCY 8 cut(s) 77, 147, 219, 249, 254, 308, 342, 384
CviKI_1 RGCY 8 cut(s) 77, 147, 219, 249, 254, 308, 342, 384
DdeI CTNAG 2 cut(s) 119, 309
DpnI GATC 4 cut(s) 16, 117, 200, 242
DpnII GATC 4 cut(s) 14, 115, 198, 240
DrdI GACNNNNNNGTC 1 cut(s) 232
DseDI GACNNNNNNGTC 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
FaeI CATG 1 cut(s) 112
FaiI YATR 5 cut(s) 63, 110, 141, 166, 381
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 1 cut(s) 238
FatI CATG 1 cut(s) 108
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 3 cut(s) 75, 78, 217
FokI GGATG 1 cut(s) 214
Fsp4HI GCNGC 3 cut(s) 75, 78, 217
GluI GCNGC 3 cut(s) 75, 78, 217
GsuI CTGGAG 1 cut(s) 265
HapII CCGG 1 cut(s) 150
Hin1II CATG 1 cut(s) 112
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 340
HpaII CCGG 1 cut(s) 150
Hpy166II GTNNAC 2 cut(s) 58, 136
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 3 cut(s) 121, 202, 244
Hpy8I GTNNAC 2 cut(s) 58, 136
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 164, 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 2 cut(s) 119, 309
HpySE526I ACGT 1 cut(s) 233
Hsp92II CATG 1 cut(s) 112
Kzo9I GATC 4 cut(s) 14, 115, 198, 240
LmnI GCTCC 3 cut(s) 85, 152, 246
LpnPI CCDG 9 cut(s) 37, 106, 129, 144, 163, 229, 273, 273, 370
Lsp1109I GCAGC 3 cut(s) 64, 86, 228
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 125
MalI GATC 4 cut(s) 16, 117, 200, 242
MboI GATC 4 cut(s) 14, 115, 198, 240
MboII GAAGA 4 cut(s) 208, 286, 289, 328
MflI RGATCY 3 cut(s) 14, 115, 240
MhlI GDGCHC 1 cut(s) 362
MluCI AATT 1 cut(s) 7
MnlI CCTC 6 cut(s) 30, 46, 59, 264, 273, 304
MseI TTAA 3 cut(s) 186, 345, 354
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 2 cut(s) 77, 308
MspI CCGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 216
NdeII GATC 4 cut(s) 14, 115, 198, 240
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 148
PkrI GCNGC 3 cut(s) 76, 79, 218
PspN4I GGNNCC 1 cut(s) 148
PsuI RGATCY 3 cut(s) 14, 115, 240
PvuII CAGCTG 2 cut(s) 77, 308
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 3 cut(s) 186, 345, 354
SatI GCNGC 3 cut(s) 75, 78, 217
Sau3AI GATC 4 cut(s) 14, 115, 198, 240
SduI GDGCHC 1 cut(s) 362
SetI ASST 8 cut(s) 57, 79, 221, 236, 251, 310, 344, 365
SfcI CTRYAG 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 1 cut(s) 7
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 1 cut(s) 236
TasI AATT 1 cut(s) 7
Tru1I TTAA 3 cut(s) 186, 345, 354
Tru9I TTAA 3 cut(s) 186, 345, 354
TscAI CASTG 1 cut(s) 136
TseI GCWGC 3 cut(s) 74, 77, 216
TspDTI ATGAA 1 cut(s) 335
TspRI CASTG 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 377
XmiI GTMKAC 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.