pycom17g17110

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0015665
Physical Location & Seq
Forward (+)
14971201 .. 14971572
372 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g17110.1

Sequence Viewer

Length: 372 bp
ATGGAGGCTTTTAGATCCATGTCATGCAGAGATGGGAGAGATGGGAGGATGCAGATGGAGGTCTACTATGGAGGGAAGCCAGGTGCTCCTCCAGCAAGCATGCAGGATTACAGCTCAAATTATGCAGGCTCTTGTGTTTCCCAGCCAAACAACCACCAGATGGTGGTGAAGGATGGGAAGATGAAGAAAGGGAAGAGCAGCCTCGGGACCGCCTCGAAGACCTGGAGCTTGAGTGATTCCGAGTTGCAGAGGAAGAAGCGGGTTGCTGGGTACAAAGTTTACACTGCAGAGGAGAAGATGAAGGGATCTCCGAGGAAGAGCTTCAACCGGATCAAGAACACCTGCACGCAAGTAGTCTACCCATGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

124

Amino Acids

13.85

Weight (kDa)

9.9

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 78 - 120 2.7e-19 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015665)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34100
malus_domestica MD09G1189600.v1.1 MD17G1172800.v1.1
prunus_persica Prupe.3G045700_v2.0.a1
pyrus_communis pycom09g10640 pycom17g17110
rosa_chinensis RchiOBHm_Chr2g0144351
rosa_laevigata RLG00000020076
rosa_multiflora Rmu_sc0003475.1_g000020
rosa_roxburghii Rroxscaffold_2G00101360
rosa_rugosa Rorug02G0386100
rosa_samantha Rh2AG438300 Rh2BG448900 Rh2CG425300 Rh2DG458500
rosa_wichuraiana Rw2G035850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 350
Acc36I ACCTGC 1 cut(s) 350
AccB7I CCANNNNNTGG 2 cut(s) 160, 163
AccI GTMKAC 2 cut(s) 63, 357
AciI CCGC 2 cut(s) 210, 259
AclWI GGATC 3 cut(s) 9, 313, 338
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 2 cut(s) 160, 163
AgsI TTSAA 1 cut(s) 325
AjnI CCWGG 2 cut(s) 79, 221
AluBI AGCT 3 cut(s) 114, 228, 321
AluI AGCT 3 cut(s) 114, 228, 321
Alw21I GWGCWC 1 cut(s) 88
AlwI GGATC 3 cut(s) 9, 313, 338
Ama87I CYCGRG 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 198
Asp700I GAANNNNTTC 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 207
AsuHPI GGTGA 1 cut(s) 178
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 1 cut(s) 207
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 210
BccI CCATC 5 cut(s) 26, 35, 49, 154, 167
BciT130I CCWGG 2 cut(s) 81, 223
BfmI CTRYAG 1 cut(s) 285
BfuAI ACCTGC 1 cut(s) 350
BisI GCNGC 1 cut(s) 199
BlsI GCNGC 1 cut(s) 200
Bme1390I CCNGG 2 cut(s) 81, 223
Bme18I GGWCC 1 cut(s) 207
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 2 cut(s) 81, 223
BmsI GCATC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 224
BpmI CTGGAG 2 cut(s) 75, 244
BpuEI CTTGAG 1 cut(s) 250
BsaJI CCNNGG 3 cut(s) 202, 311, 362
BsaWI WCCGGW 1 cut(s) 327
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 163
BseBI CCWGG 2 cut(s) 81, 223
BseDI CCNNGG 3 cut(s) 202, 311, 362
BseGI GGATG 2 cut(s) 54, 178
BseLI CCNNNNNNNGG 2 cut(s) 160, 163
BseRI GAGGAG 2 cut(s) 78, 305
BseXI GCAGC 1 cut(s) 210
BseYI CCCAGC 2 cut(s) 141, 266
BsgI GTGCAG 1 cut(s) 328
BsiHKAI GWGCWC 1 cut(s) 88
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 1 cut(s) 328
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 2 cut(s) 160, 163
BsmFI GGGAC 1 cut(s) 220
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 3 cut(s) 14, 305, 330
Bsp19I CCATGG 1 cut(s) 362
BspACI CCGC 2 cut(s) 210, 259
BspLI GGNNCC 1 cut(s) 208
BspMAI CTGCAG 1 cut(s) 289
BspMI ACCTGC 1 cut(s) 350
BspPI GGATC 3 cut(s) 9, 313, 338
BspQI GCTCTTC 2 cut(s) 188, 311
BssECI CCNNGG 3 cut(s) 202, 311, 362
BssMI GATC 3 cut(s) 14, 305, 330
BssT1I CCWWGG 1 cut(s) 362
Bst2UI CCWGG 2 cut(s) 81, 223
Bst6I CTCTTC 2 cut(s) 188, 311
BstC8I GCNNGC 4 cut(s) 97, 101, 127, 347
BstDSI CCRYGG 1 cut(s) 362
BstF5I GGATG 2 cut(s) 54, 178
BstKTI GATC 3 cut(s) 17, 308, 333
BstMBI GATC 3 cut(s) 14, 305, 330
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 2 cut(s) 81, 223
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 2 cut(s) 79, 221
BstSFI CTRYAG 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 2 cut(s) 14, 305
BstYI RGATCY 2 cut(s) 14, 305
BtgI CCRYGG 1 cut(s) 362
BtsCI GGATG 2 cut(s) 54, 178
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
BveI ACCTGC 1 cut(s) 350
Cac8I GCNNGC 4 cut(s) 97, 101, 127, 347
Cfr13I GGNCC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 271
CviAII CATG 4 cut(s) 19, 24, 100, 363
CviJI RGCY 8 cut(s) 8, 79, 114, 129, 145, 201, 228, 321
CviKI_1 RGCY 8 cut(s) 8, 79, 114, 129, 145, 201, 228, 321
CviQI GTAC 1 cut(s) 271
DpnI GATC 3 cut(s) 16, 307, 332
DpnII GATC 3 cut(s) 14, 305, 330
Eam1104I CTCTTC 2 cut(s) 188, 311
EarI CTCTTC 2 cut(s) 188, 311
Eco130I CCWWGG 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 203
EcoRII CCWGG 2 cut(s) 79, 221
EcoT14I CCWWGG 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 362
FaeI CATG 4 cut(s) 22, 27, 103, 366
FaiI YATR 6 cut(s) 20, 25, 69, 101, 123, 364
FaqI GGGAC 1 cut(s) 220
FatI CATG 4 cut(s) 18, 23, 99, 362
FauI CCCGC 1 cut(s) 252
FblI GTMKAC 2 cut(s) 63, 357
Fnu4HI GCNGC 1 cut(s) 199
FokI GGATG 2 cut(s) 61, 185
Fsp4HI GCNGC 1 cut(s) 199
GluI GCNGC 1 cut(s) 199
GsaI CCCAGC 2 cut(s) 145, 270
GsuI CTGGAG 2 cut(s) 75, 244
HapII CCGG 1 cut(s) 328
Hin1II CATG 4 cut(s) 22, 27, 103, 366
HinfI GANTC 1 cut(s) 236
HpaII CCGG 1 cut(s) 328
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 3 cut(s) 64, 280, 358
Hpy188I TCNGA 2 cut(s) 241, 312
Hpy188III TCNNGA 2 cut(s) 205, 334
Hpy8I GTNNAC 3 cut(s) 64, 280, 358
HpyAV CCTTC 2 cut(s) 163, 295
HpyCH4V TGCA 7 cut(s) 27, 52, 103, 125, 247, 287, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
Hsp92II CATG 4 cut(s) 22, 27, 103, 366
Kzo9I GATC 3 cut(s) 14, 305, 330
LguI GCTCTTC 2 cut(s) 188, 311
LmnI GCTCC 2 cut(s) 91, 225
Lsp1109I GCAGC 1 cut(s) 210
LweI GCATC 1 cut(s) 39
MalI GATC 3 cut(s) 16, 307, 332
MboI GATC 3 cut(s) 14, 305, 330
MboII GAAGA 7 cut(s) 190, 196, 205, 229, 265, 307, 328
MflI RGATCY 2 cut(s) 14, 305
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 1 cut(s) 118
MnlI CCTC 9 cut(s) 39, 52, 65, 99, 212, 223, 243, 283, 306
MroXI GAANNNNTTC 1 cut(s) 320
MslI CAYNNNNRTG 1 cut(s) 367
MspI CCGG 1 cut(s) 328
MspR9I CCNGG 2 cut(s) 81, 223
MvaI CCWGG 2 cut(s) 81, 223
MwoI GCNNNNNNNGC 1 cut(s) 92
NcoI CCATGG 1 cut(s) 362
NdeII GATC 3 cut(s) 14, 305, 330
NlaIII CATG 4 cut(s) 22, 27, 103, 366
NlaIV GGNNCC 1 cut(s) 208
NspI RCATGY 1 cut(s) 103
PaeI GCATGC 1 cut(s) 103
PaqCI CACCTGC 1 cut(s) 350
PciSI GCTCTTC 2 cut(s) 188, 311
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 1 cut(s) 236
PflMI CCANNNNNTGG 2 cut(s) 160, 163
PkrI GCNGC 1 cut(s) 200
Psp6I CCWGG 2 cut(s) 79, 221
PspFI CCCAGC 2 cut(s) 141, 266
PspGI CCWGG 2 cut(s) 79, 221
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 207
PstI CTGCAG 1 cut(s) 289
PsuI RGATCY 2 cut(s) 14, 305
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
RseI CAYNNNNRTG 1 cut(s) 367
SapI GCTCTTC 2 cut(s) 188, 311
SatI GCNGC 1 cut(s) 199
Sau3AI GATC 3 cut(s) 14, 305, 330
Sau96I GGNCC 1 cut(s) 207
ScrFI CCNGG 2 cut(s) 81, 223
SduI GDGCHC 1 cut(s) 88
SetI ASST 7 cut(s) 63, 85, 116, 224, 230, 323, 344
SfaNI GCATC 1 cut(s) 39
SfcI CTRYAG 1 cut(s) 285
SinI GGWCC 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 367
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
SphI GCATGC 1 cut(s) 103
Sse9I AATT 1 cut(s) 118
SsiI CCGC 2 cut(s) 210, 259
StyD4I CCNGG 2 cut(s) 79, 221
StyI CCWWGG 1 cut(s) 362
TaqI TCGA 1 cut(s) 215
TasI AATT 1 cut(s) 118
TfiI GAWTC 1 cut(s) 236
TscAI CASTG 1 cut(s) 289
TseI GCWGC 1 cut(s) 198
TspDTI ATGAA 2 cut(s) 197, 314
TspRI CASTG 1 cut(s) 289
Van91I CCANNNNNTGG 2 cut(s) 160, 163
VpaK11BI GGWCC 1 cut(s) 207
XceI RCATGY 1 cut(s) 103
XmiI GTMKAC 2 cut(s) 63, 357
XmnI GAANNNNTTC 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.