pycom09g10640

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0015665
Physical Location & Seq
Forward (+)
8684940 .. 8685717
778 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g10640.1

Sequence Viewer

Length: 543 bp
ATGCATATTCTCACGTTCACACAAACACATGACGCACCAACAAAGAAAAGCAAACCCAATAAAAGAAAAGTCTTTGCCTCCCCTTCCCTCCTCATTGTCTTATTGTCATCCTTGCATAGAAACCTTCGAACTCTGTCTGCTTTTTCTCCTCCTCTTCTTCTTCTCATGGAGGATTTCAGATCCAAGTCATGCAGAGATGGGAGAGATGGGAGGATGCAGATGGACGTTTACTATGGAGGCAAACCAGGTGCTCCTCCAACAAGCATGCAGGATCTCAGAAGTTACAGCTCAAATTATGCAGGCTCTTCTGTTTCCCAGCCAAACAGCCATCAGATGGTGGTGAAGGATGGGAAGCTGAAGAAAGGGAAGGGCAGCCTATCCGCCTCAAAAAGCTGGAGCTTGAGTGATCCGGAGTTGCAGAGGAAGAAGAGGGTTGCTGGGTACAAAGTTTACACTGCAGAGGAGAAGATGAAAGGGTCTCTGAGGAAGAGCTTCAAGTGGATCAAGAACACCTACACCCAAGTAGTCTACGGATGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

181

Amino Acids

20.34

Weight (kDa)

10.27

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 135 - 178 1.8e-24 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015665)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34100
malus_domestica MD09G1189600.v1.1 MD17G1172800.v1.1
prunus_persica Prupe.3G045700_v2.0.a1
pyrus_communis pycom09g10640 pycom17g17110
rosa_chinensis RchiOBHm_Chr2g0144351
rosa_laevigata RLG00000020076
rosa_multiflora Rmu_sc0003475.1_g000020
rosa_roxburghii Rroxscaffold_2G00101360
rosa_rugosa Rorug02G0386100
rosa_samantha Rh2AG438300 Rh2BG448900 Rh2CG425300 Rh2DG458500
rosa_wichuraiana Rw2G035850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 334
AccI GTMKAC 1 cut(s) 528
AccIII TCCGGA 1 cut(s) 409
AciI CCGC 1 cut(s) 381
AclWI GGATC 4 cut(s) 174, 279, 401, 509
AcuI CTGAAG 1 cut(s) 377
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 1 cut(s) 334
AgsI TTSAA 1 cut(s) 496
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 5 cut(s) 288, 355, 393, 399, 492
AluI AGCT 5 cut(s) 288, 355, 393, 399, 492
Alw21I GWGCWC 1 cut(s) 253
Alw26I GTCTC 1 cut(s) 483
AlwI GGATC 4 cut(s) 174, 279, 401, 509
Aor13HI TCCGGA 1 cut(s) 409
ApeKI GCWGC 1 cut(s) 372
Asp700I GAANNNNTTC 1 cut(s) 491
AsuHPI GGTGA 1 cut(s) 352
AsuII TTCGAA 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 384
BccI CCATC 7 cut(s) 191, 200, 214, 328, 336, 341, 528
BciT130I CCWGG 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 483
BfmI CTRYAG 1 cut(s) 456
BisI GCNGC 1 cut(s) 373
BlsI GCNGC 1 cut(s) 374
Bme1390I CCNGG 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 1 cut(s) 204
BpmI CTGGAG 1 cut(s) 415
Bpu14I TTCGAA 1 cut(s) 127
BpuEI CTTGAG 1 cut(s) 421
BsaI GGTCTC 1 cut(s) 483
BsaWI WCCGGW 1 cut(s) 409
BsaXI ACNNNNNCTCC 2 cut(s) 388, 418
Bsc4I CCNNNNNNNGG 1 cut(s) 334
BseAI TCCGGA 1 cut(s) 409
BseBI CCWGG 1 cut(s) 246
BseGI GGATG 4 cut(s) 107, 219, 352, 539
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMII CTCAG 2 cut(s) 289, 473
BseRI GAGGAG 5 cut(s) 80, 138, 141, 243, 476
BseXI GCAGC 1 cut(s) 384
BseYI CCCAGC 2 cut(s) 315, 437
BsiHKAI GWGCWC 1 cut(s) 253
BsiSI CCGG 1 cut(s) 410
BslI CCNNNNNNNGG 1 cut(s) 334
BsmAI GTCTC 1 cut(s) 483
Bso31I GGTCTC 1 cut(s) 483
Bsp119I TTCGAA 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 253
Bsp13I TCCGGA 1 cut(s) 409
Bsp143I GATC 4 cut(s) 179, 271, 406, 501
BspACI CCGC 1 cut(s) 381
BspCNI CTCAG 2 cut(s) 288, 474
BspEI TCCGGA 1 cut(s) 409
BspMAI CTGCAG 1 cut(s) 460
BspPI GGATC 4 cut(s) 174, 279, 401, 509
BspQI GCTCTTC 2 cut(s) 310, 482
BspT104I TTCGAA 1 cut(s) 127
BspTNI GGTCTC 1 cut(s) 483
BssMI GATC 4 cut(s) 179, 271, 406, 501
Bst2UI CCWGG 1 cut(s) 246
Bst6I CTCTTC 4 cut(s) 159, 310, 422, 482
BstBI TTCGAA 1 cut(s) 127
BstC8I GCNNGC 2 cut(s) 266, 301
BstDEI CTNAG 2 cut(s) 275, 482
BstF5I GGATG 4 cut(s) 107, 219, 352, 539
BstKTI GATC 4 cut(s) 182, 274, 409, 504
BstMAI GTCTC 1 cut(s) 483
BstMBI GATC 4 cut(s) 179, 271, 406, 501
BstNI CCWGG 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 456
BstV1I GCAGC 1 cut(s) 384
BstX2I RGATCY 2 cut(s) 179, 271
BstYI RGATCY 2 cut(s) 179, 271
BtsCI GGATG 4 cut(s) 107, 219, 352, 539
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 1 cut(s) 453
Cac8I GCNNGC 2 cut(s) 266, 301
CseI GACGC 1 cut(s) 41
CsiI ACCWGGT 1 cut(s) 244
Csp6I GTAC 1 cut(s) 442
CviAII CATG 4 cut(s) 29, 166, 189, 265
CviJI RGCY 9 cut(s) 288, 303, 319, 327, 355, 375, 393, 399, 492
CviKI_1 RGCY 9 cut(s) 288, 303, 319, 327, 355, 375, 393, 399, 492
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 2 cut(s) 275, 482
DpnI GATC 4 cut(s) 181, 273, 408, 503
DpnII GATC 4 cut(s) 179, 271, 406, 501
Eam1104I CTCTTC 4 cut(s) 159, 310, 422, 482
EarI CTCTTC 4 cut(s) 159, 310, 422, 482
EciI GGCGGA 1 cut(s) 370
Eco31I GGTCTC 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 32, 169, 192, 268
FaiI YATR 8 cut(s) 6, 30, 117, 167, 190, 234, 266, 297
FatI CATG 4 cut(s) 28, 165, 188, 264
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 1 cut(s) 373
FokI GGATG 3 cut(s) 94, 226, 359
Fsp4HI GCNGC 1 cut(s) 373
GluI GCNGC 1 cut(s) 373
GsaI CCCAGC 2 cut(s) 319, 441
GsuI CTGGAG 1 cut(s) 415
HapII CCGG 1 cut(s) 410
HgaI GACGC 1 cut(s) 41
Hin1II CATG 4 cut(s) 32, 169, 192, 268
HpaII CCGG 1 cut(s) 410
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 4 cut(s) 18, 229, 451, 529
Hpy188I TCNGA 4 cut(s) 179, 278, 333, 483
Hpy188III TCNNGA 2 cut(s) 410, 505
Hpy8I GTNNAC 4 cut(s) 18, 229, 451, 529
HpyAV CCTTC 4 cut(s) 93, 134, 337, 361
HpyCH4IV ACGT 2 cut(s) 14, 225
HpyCH4V TGCA 8 cut(s) 4, 115, 192, 217, 268, 299, 418, 458
HpyF3I CTNAG 2 cut(s) 275, 482
HpySE526I ACGT 2 cut(s) 14, 225
Hsp92II CATG 4 cut(s) 32, 169, 192, 268
Kpn2I TCCGGA 1 cut(s) 409
Kzo9I GATC 4 cut(s) 179, 271, 406, 501
LguI GCTCTTC 2 cut(s) 310, 482
LmnI GCTCC 2 cut(s) 256, 396
LpnPI CCDG 8 cut(s) 231, 254, 258, 285, 329, 379, 423, 423
Lsp1109I GCAGC 1 cut(s) 384
LweI GCATC 1 cut(s) 204
MabI ACCWGGT 1 cut(s) 244
MaeII ACGT 2 cut(s) 14, 225
MaeIII GTNAC 1 cut(s) 281
MalI GATC 4 cut(s) 181, 273, 408, 503
MboI GATC 4 cut(s) 179, 271, 406, 501
MboII GAAGA 9 cut(s) 146, 149, 152, 297, 370, 436, 439, 478, 499
MflI RGATCY 2 cut(s) 179, 271
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 1 cut(s) 292
MmeI TCCRAC 1 cut(s) 281
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 409
MroXI GAANNNNTTC 1 cut(s) 491
MspI CCGG 1 cut(s) 410
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
NdeII GATC 4 cut(s) 179, 271, 406, 501
NlaIII CATG 4 cut(s) 32, 169, 192, 268
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 268
NspV TTCGAA 1 cut(s) 127
PaeI GCATGC 1 cut(s) 268
PciSI GCTCTTC 2 cut(s) 310, 482
PdmI GAANNNNTTC 1 cut(s) 491
PflMI CCANNNNNTGG 1 cut(s) 334
PkrI GCNGC 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 244
PspFI CCCAGC 2 cut(s) 315, 437
PspGI CCWGG 1 cut(s) 244
PstI CTGCAG 1 cut(s) 460
PsuI RGATCY 2 cut(s) 179, 271
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
SapI GCTCTTC 2 cut(s) 310, 482
SatI GCNGC 1 cut(s) 373
Sau3AI GATC 4 cut(s) 179, 271, 406, 501
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 1 cut(s) 253
SexAI ACCWGGT 1 cut(s) 244
SfaNI GCATC 1 cut(s) 204
SfcI CTRYAG 1 cut(s) 456
SfuI TTCGAA 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 400
SmoI CTYRAG 1 cut(s) 400
SphI GCATGC 1 cut(s) 268
Sse9I AATT 1 cut(s) 292
SsiI CCGC 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 244
TaiI ACGT 2 cut(s) 17, 228
TaqI TCGA 1 cut(s) 127
TasI AATT 1 cut(s) 292
TscAI CASTG 1 cut(s) 460
TseI GCWGC 1 cut(s) 372
TspDTI ATGAA 1 cut(s) 485
TspRI CASTG 1 cut(s) 460
Van91I CCANNNNNTGG 1 cut(s) 334
XceI RCATGY 1 cut(s) 268
XmiI GTMKAC 1 cut(s) 528
XmnI GAANNNNTTC 1 cut(s) 491
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.