Rh2AG438300

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0015665
Physical Location & Seq
Reverse (-)
64933735 .. 64935448
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG438300.1

Sequence Viewer

Length: 441 bp
ATGGAAAATTACAGATCCAAGTCCTGTAGAGATGGGAGGAACATGCAGATGGAGGTCTACTATGGAGGCAGCAGAGATGAGAGGAATATGCAGATGGATGTCTACTATGGAGGCAAGGCAGCTCCACCACCACCACCACCACCACCACCAACAAGCATGAGAGATCTCAGGAGTTACAGTGTCAACTATACTGGCTCCGGTAGTTCTGGTGCATACCCAAATAATCAGATTGTTAAAGATGTGAAGATCAAGAAAGGGAAGAGCAGCTTGGGGACATCCACATCAAAGATCTGGAGCTTGGCTGACCCAGAGTTGCAGAGGAAGAAGAGGGTTGCTGGATACAAAGTCTATTCAGCTGAGGAGAAGATGAAAGGGTCTTTCAAAAAAAGCTTTAAGTGGATTAAGAGCACCTACACCCAAGTAGTCTATGGCTGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

146

Amino Acids

16.59

Weight (kDa)

9.91

Isoelectric Point (pI)

31.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 101 - 144 4e-23 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015665)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34100
malus_domestica MD09G1189600.v1.1 MD17G1172800.v1.1
prunus_persica Prupe.3G045700_v2.0.a1
pyrus_communis pycom09g10640 pycom17g17110
rosa_chinensis RchiOBHm_Chr2g0144351
rosa_laevigata RLG00000020076
rosa_multiflora Rmu_sc0003475.1_g000020
rosa_roxburghii Rroxscaffold_2G00101360
rosa_rugosa Rorug02G0386100
rosa_samantha Rh2AG438300 Rh2BG448900 Rh2CG425300 Rh2DG458500
rosa_wichuraiana Rw2G035850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 57, 102
AclWI GGATC 1 cut(s) 9
AgsI TTSAA 1 cut(s) 382
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AluBI AGCT 5 cut(s) 122, 267, 297, 356, 390
AluI AGCT 5 cut(s) 122, 267, 297, 356, 390
Alw21I GWGCWC 1 cut(s) 410
AlwI GGATC 1 cut(s) 9
ApeKI GCWGC 3 cut(s) 69, 119, 264
Bbv12I GWGCWC 1 cut(s) 410
BbvCI CCTCAGC 1 cut(s) 357
BbvI GCAGC 3 cut(s) 81, 131, 276
BccI CCATC 3 cut(s) 26, 43, 88
BciVI GTATCC 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 25
BfuI GTATCC 1 cut(s) 332
BglII AGATCT 2 cut(s) 163, 288
BisI GCNGC 3 cut(s) 70, 120, 265
BlsI GCNGC 3 cut(s) 71, 121, 266
BmiI GGNNCC 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 313
Bpu10I CCTNAGC 1 cut(s) 357
BsaWI WCCGGW 1 cut(s) 197
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bse1I ACTGG 1 cut(s) 196
BseGI GGATG 2 cut(s) 103, 275
BseMII CTCAG 2 cut(s) 181, 348
BseNI ACTGG 1 cut(s) 196
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 3 cut(s) 81, 131, 276
BsiHKAI GWGCWC 1 cut(s) 410
BsiSI CCGG 1 cut(s) 198
BslFI GGGAC 1 cut(s) 286
BsmFI GGGAC 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 410
Bsp143I GATC 4 cut(s) 14, 163, 246, 288
BspCNI CTCAG 2 cut(s) 180, 349
BspLI GGNNCC 1 cut(s) 196
BspPI GGATC 1 cut(s) 9
BspQI GCTCTTC 1 cut(s) 254
BsrI ACTGG 1 cut(s) 196
BssMI GATC 4 cut(s) 14, 163, 246, 288
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 2 cut(s) 254, 320
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 2 cut(s) 167, 357
BstF5I GGATG 2 cut(s) 103, 275
BstKTI GATC 4 cut(s) 17, 166, 249, 291
BstMBI GATC 4 cut(s) 14, 163, 246, 288
BstNSI RCATGY 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 3 cut(s) 81, 131, 276
BstX2I RGATCY 3 cut(s) 14, 163, 288
BstYI RGATCY 3 cut(s) 14, 163, 288
BsuI GTATCC 1 cut(s) 332
BtsCI GGATG 2 cut(s) 103, 275
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 434
CviAII CATG 2 cut(s) 43, 157
CviJI RGCY 8 cut(s) 122, 195, 267, 297, 302, 356, 390, 432
CviKI_1 RGCY 8 cut(s) 122, 195, 267, 297, 302, 356, 390, 432
DdeI CTNAG 2 cut(s) 167, 357
DpnI GATC 4 cut(s) 16, 165, 248, 290
DpnII GATC 4 cut(s) 14, 163, 246, 288
Eam1104I CTCTTC 2 cut(s) 254, 320
EarI CTCTTC 2 cut(s) 254, 320
FaeI CATG 2 cut(s) 46, 160
FaiI YATR 8 cut(s) 44, 63, 89, 108, 158, 189, 214, 429
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FaqI GGGAC 1 cut(s) 286
FatI CATG 2 cut(s) 42, 156
FblI GTMKAC 2 cut(s) 57, 102
Fnu4HI GCNGC 3 cut(s) 70, 120, 265
FokI GGATG 2 cut(s) 110, 262
Fsp4HI GCNGC 3 cut(s) 70, 120, 265
GluI GCNGC 3 cut(s) 70, 120, 265
GsuI CTGGAG 1 cut(s) 313
HapII CCGG 1 cut(s) 198
Hin1II CATG 2 cut(s) 46, 160
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 388
HpaII CCGG 1 cut(s) 198
Hpy166II GTNNAC 3 cut(s) 58, 103, 184
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 3 cut(s) 169, 250, 292
Hpy8I GTNNAC 3 cut(s) 58, 103, 184
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 4 cut(s) 46, 91, 212, 316
HpyF3I CTNAG 2 cut(s) 167, 357
Hsp92II CATG 2 cut(s) 46, 160
Kzo9I GATC 4 cut(s) 14, 163, 246, 288
LguI GCTCTTC 1 cut(s) 254
LmnI GCTCC 3 cut(s) 127, 200, 294
LpnPI CCDG 9 cut(s) 37, 154, 177, 192, 211, 277, 321, 321, 418
Lsp1109I GCAGC 3 cut(s) 81, 131, 276
MaeIII GTNAC 1 cut(s) 173
MalI GATC 4 cut(s) 16, 165, 248, 290
MboI GATC 4 cut(s) 14, 163, 246, 288
MboII GAAGA 5 cut(s) 256, 271, 334, 337, 376
MflI RGATCY 3 cut(s) 14, 163, 288
MhlI GDGCHC 1 cut(s) 410
MluCI AATT 1 cut(s) 7
MnlI CCTC 8 cut(s) 30, 46, 59, 75, 104, 312, 321, 352
MseI TTAA 3 cut(s) 234, 393, 402
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 1 cut(s) 198
NdeII GATC 4 cut(s) 14, 163, 246, 288
NlaIII CATG 2 cut(s) 46, 160
NlaIV GGNNCC 1 cut(s) 196
NspI RCATGY 1 cut(s) 46
PciSI GCTCTTC 1 cut(s) 254
PkrI GCNGC 3 cut(s) 71, 121, 266
PspN4I GGNNCC 1 cut(s) 196
PsuI RGATCY 3 cut(s) 14, 163, 288
PvuII CAGCTG 1 cut(s) 356
RseI CAYNNNNRTG 1 cut(s) 47
SapI GCTCTTC 1 cut(s) 254
SaqAI TTAA 3 cut(s) 234, 393, 402
SatI GCNGC 3 cut(s) 70, 120, 265
Sau3AI GATC 4 cut(s) 14, 163, 246, 288
SduI GDGCHC 1 cut(s) 410
SetI ASST 7 cut(s) 57, 124, 269, 299, 358, 392, 413
SfcI CTRYAG 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 1 cut(s) 7
TaaI ACNGT 1 cut(s) 179
TasI AATT 1 cut(s) 7
Tru1I TTAA 3 cut(s) 234, 393, 402
Tru9I TTAA 3 cut(s) 234, 393, 402
TscAI CASTG 1 cut(s) 184
TseI GCWGC 3 cut(s) 69, 119, 264
TspDTI ATGAA 1 cut(s) 383
TspRI CASTG 1 cut(s) 184
XceI RCATGY 1 cut(s) 46
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XmiI GTMKAC 2 cut(s) 57, 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.