Rroxscaffold_2G00101360

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015665
Physical Location & Seq
Forward (+)
23349980 .. 23350690
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00101360.1

Sequence Viewer

Length: 471 bp
ATGGAGAATTACAGATCCAAGTCCTGTAGAGATGGGAGGAACACGCAGATGGAGGTCTACTATGGAGGCAGCAGAGATGAGAGGAATATGCAGATGGACGTCTACTATGGGGGCAAGGCAGCTCCACCACCACCACCACCACCAACAAGCATGAGAGATCTCAGGAGTTACAGTGTCAACTATACTGGCTCTGGTAGTTCTGGTGCATACCCAAATAATCAGATTGTTAAAGATGTGAAGATCAAGAAAGGCAAGAGCAGCTTGGGGACATCCACATCAAAGATCTGGAGCTTGGCTGACCCAGAGTTGCAGAGGAAGAAGAGGGTTGCTGGATACAAAGTCTATTCAGCTGAGGAGAAGATGAAAGGGTCTTTCAAAAAAAGCTTTAAGTGGATTAAGAGCACCTACACCCAATTGGGTTCCAAGACAGCAGCTGTAGTCGATTTTAGGCTAAGCAAGAAACCTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

156

Amino Acids

17.46

Weight (kDa)

9.97

Isoelectric Point (pI)

26.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 99 - 139 2e-21 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015665)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34100
malus_domestica MD09G1189600.v1.1 MD17G1172800.v1.1
prunus_persica Prupe.3G045700_v2.0.a1
pyrus_communis pycom09g10640 pycom17g17110
rosa_chinensis RchiOBHm_Chr2g0144351
rosa_laevigata RLG00000020076
rosa_multiflora Rmu_sc0003475.1_g000020
rosa_roxburghii Rroxscaffold_2G00101360
rosa_rugosa Rorug02G0386100
rosa_samantha Rh2AG438300 Rh2BG448900 Rh2CG425300 Rh2DG458500
rosa_wichuraiana Rw2G035850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 102
AccI GTMKAC 2 cut(s) 57, 102
AclWI GGATC 1 cut(s) 9
AcyI GRCGYC 1 cut(s) 99
AgsI TTSAA 1 cut(s) 376
AjnI CCWGG 1 cut(s) 463
AluBI AGCT 6 cut(s) 122, 261, 291, 350, 384, 434
AluI AGCT 6 cut(s) 122, 261, 291, 350, 384, 434
Alw21I GWGCWC 1 cut(s) 404
AlwI GGATC 1 cut(s) 9
AlwNI CAGNNNCTG 1 cut(s) 434
ApeKI GCWGC 4 cut(s) 69, 119, 258, 431
Bbv12I GWGCWC 1 cut(s) 404
BbvCI CCTCAGC 1 cut(s) 351
BbvI GCAGC 4 cut(s) 81, 131, 270, 443
BccI CCATC 3 cut(s) 26, 43, 88
BciT130I CCWGG 1 cut(s) 465
BciVI GTATCC 1 cut(s) 326
BfmI CTRYAG 2 cut(s) 25, 435
BfuI GTATCC 1 cut(s) 326
BglII AGATCT 2 cut(s) 157, 282
BisI GCNGC 4 cut(s) 70, 120, 259, 432
BlpI GCTNAGC 1 cut(s) 452
BlsI GCNGC 4 cut(s) 71, 121, 260, 433
Bme1390I CCNGG 1 cut(s) 465
BmiI GGNNCC 1 cut(s) 421
BmrFI CCNGG 1 cut(s) 465
BpmI CTGGAG 1 cut(s) 307
Bpu10I CCTNAGC 1 cut(s) 351
Bpu1102I GCTNAGC 1 cut(s) 452
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 464
BsaXI ACNNNNNCTCC 2 cut(s) 157, 187
Bse1I ACTGG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 465
BseDI CCNNGG 1 cut(s) 464
BseGI GGATG 1 cut(s) 269
BseMII CTCAG 2 cut(s) 175, 342
BseNI ACTGG 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 368
BseXI GCAGC 4 cut(s) 81, 131, 270, 443
BsiHKAI GWGCWC 1 cut(s) 404
BslFI GGGAC 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 404
Bsp143I GATC 4 cut(s) 14, 157, 240, 282
Bsp1720I GCTNAGC 1 cut(s) 452
BspCNI CTCAG 2 cut(s) 174, 343
BspLI GGNNCC 1 cut(s) 421
BspPI GGATC 1 cut(s) 9
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 464
BssMI GATC 4 cut(s) 14, 157, 240, 282
BssNI GRCGYC 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 314
BstACI GRCGYC 1 cut(s) 99
BstDEI CTNAG 3 cut(s) 161, 351, 452
BstF5I GGATG 1 cut(s) 269
BstKTI GATC 4 cut(s) 17, 160, 243, 285
BstMBI GATC 4 cut(s) 14, 157, 240, 282
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstNI CCWGG 1 cut(s) 465
BstSCI CCNGG 1 cut(s) 463
BstSFI CTRYAG 2 cut(s) 25, 435
BstV1I GCAGC 4 cut(s) 81, 131, 270, 443
BstX2I RGATCY 3 cut(s) 14, 157, 282
BstYI RGATCY 3 cut(s) 14, 157, 282
BsuI GTATCC 1 cut(s) 326
BtsCI GGATG 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 178
CaiI CAGNNNCTG 1 cut(s) 434
CviAII CATG 1 cut(s) 151
CviJI RGCY 9 cut(s) 122, 189, 261, 291, 296, 350, 384, 434, 451
CviKI_1 RGCY 9 cut(s) 122, 189, 261, 291, 296, 350, 384, 434, 451
DdeI CTNAG 3 cut(s) 161, 351, 452
DpnI GATC 4 cut(s) 16, 159, 242, 284
DpnII GATC 4 cut(s) 14, 157, 240, 282
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
EcoRII CCWGG 1 cut(s) 463
FaeI CATG 1 cut(s) 154
FaiI YATR 6 cut(s) 63, 89, 108, 152, 183, 208
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 1 cut(s) 280
FatI CATG 1 cut(s) 150
FblI GTMKAC 2 cut(s) 57, 102
Fnu4HI GCNGC 4 cut(s) 70, 120, 259, 432
FokI GGATG 1 cut(s) 256
Fsp4HI GCNGC 4 cut(s) 70, 120, 259, 432
GluI GCNGC 4 cut(s) 70, 120, 259, 432
GsuI CTGGAG 1 cut(s) 307
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 1 cut(s) 154
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 382
Hpy166II GTNNAC 3 cut(s) 58, 103, 178
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 3 cut(s) 163, 244, 286
Hpy8I GTNNAC 3 cut(s) 58, 103, 178
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 3 cut(s) 91, 206, 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 3 cut(s) 161, 351, 452
HpySE526I ACGT 1 cut(s) 99
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 1 cut(s) 154
Kzo9I GATC 4 cut(s) 14, 157, 240, 282
LmnI GCTCC 2 cut(s) 127, 288
LpnPI CCDG 9 cut(s) 37, 148, 171, 177, 186, 271, 315, 315, 450
Lsp1109I GCAGC 4 cut(s) 81, 131, 270, 443
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 167
MalI GATC 4 cut(s) 16, 159, 242, 284
MboI GATC 4 cut(s) 14, 157, 240, 282
MboII GAAGA 4 cut(s) 250, 328, 331, 370
MfeI CAATTG 1 cut(s) 413
MflI RGATCY 3 cut(s) 14, 157, 282
MhlI GDGCHC 1 cut(s) 404
MluCI AATT 2 cut(s) 7, 413
MnlI CCTC 7 cut(s) 30, 46, 59, 75, 306, 315, 346
MseI TTAA 3 cut(s) 228, 387, 396
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 2 cut(s) 350, 434
MspR9I CCNGG 1 cut(s) 465
MunI CAATTG 1 cut(s) 413
MvaI CCWGG 1 cut(s) 465
MwoI GCNNNNNNNGC 1 cut(s) 258
NdeII GATC 4 cut(s) 14, 157, 240, 282
NlaIII CATG 1 cut(s) 154
NlaIV GGNNCC 1 cut(s) 421
PkrI GCNGC 4 cut(s) 71, 121, 260, 433
Psp6I CCWGG 1 cut(s) 463
PspGI CCWGG 1 cut(s) 463
PspN4I GGNNCC 1 cut(s) 421
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 3 cut(s) 14, 157, 282
PvuII CAGCTG 2 cut(s) 350, 434
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 3 cut(s) 228, 387, 396
SatI GCNGC 4 cut(s) 70, 120, 259, 432
Sau3AI GATC 4 cut(s) 14, 157, 240, 282
ScrFI CCNGG 1 cut(s) 465
SduI GDGCHC 1 cut(s) 404
SfcI CTRYAG 2 cut(s) 25, 435
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 2 cut(s) 7, 413
StyD4I CCNGG 1 cut(s) 463
TaaI ACNGT 1 cut(s) 173
TaiI ACGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 441
TasI AATT 2 cut(s) 7, 413
Tru1I TTAA 3 cut(s) 228, 387, 396
Tru9I TTAA 3 cut(s) 228, 387, 396
TscAI CASTG 1 cut(s) 178
TseI GCWGC 4 cut(s) 69, 119, 258, 431
TspDTI ATGAA 1 cut(s) 377
TspRI CASTG 1 cut(s) 178
XmiI GTMKAC 2 cut(s) 57, 102
ZraI GACGTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.