MD09G1189600.v1.1

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0015665
Physical Location & Seq
Forward (+)
16569290 .. 16569667
378 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1189600.v1.1.491

Sequence Viewer

Length: 378 bp
ATGGAGGATTTCAGATCCAAGTCATGCAGAGATGGGAGAGATGGGAGGATGCAGATGGAAGTTTACTATGGAGGCAAACCAGGTGCTCCTCCAACAAGCATGCAGGATCTCAGAAGTTACAGCTCAAATTATGCAGGCTCTTGTGTTTCCCAGCCAAACAGCCATCAGATGGTGGTGAAGGATGGGAAGCTGAAGAAAGGGAAGGGCAGCCTATCCGCCTCGAAAAGCTGGAGCTTGAGTGATCCGGAGTTGCAGAGGAAGAAGAGGGTTGCTGGGTACAAAGTTTACACAGCAGAGGAGAAGATGAAAGGGTCTCTGAGGAAGAGCTTCAAGTGGATCAAGAACACCTACACCCAAGTAGTCTACGGATGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

126

Amino Acids

14.21

Weight (kDa)

9.94

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 80 - 123 8.9e-25 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015665)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34100
malus_domestica MD09G1189600.v1.1 MD17G1172800.v1.1
prunus_persica Prupe.3G045700_v2.0.a1
pyrus_communis pycom09g10640 pycom17g17110
rosa_chinensis RchiOBHm_Chr2g0144351
rosa_laevigata RLG00000020076
rosa_multiflora Rmu_sc0003475.1_g000020
rosa_roxburghii Rroxscaffold_2G00101360
rosa_rugosa Rorug02G0386100
rosa_samantha Rh2AG438300 Rh2BG448900 Rh2CG425300 Rh2DG458500
rosa_wichuraiana Rw2G035850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 169
AccI GTMKAC 1 cut(s) 363
AccIII TCCGGA 1 cut(s) 244
AciI CCGC 1 cut(s) 216
AclWI GGATC 4 cut(s) 9, 114, 236, 344
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 1 cut(s) 331
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 5 cut(s) 123, 190, 228, 234, 327
AluI AGCT 5 cut(s) 123, 190, 228, 234, 327
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 4 cut(s) 9, 114, 236, 344
Aor13HI TCCGGA 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 207
Asp700I GAANNNNTTC 1 cut(s) 326
AsuHPI GGTGA 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 219
BccI CCATC 7 cut(s) 26, 35, 49, 163, 171, 176, 363
BciT130I CCWGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 318
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
Bme1390I CCNGG 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 250
BpuEI CTTGAG 1 cut(s) 256
BsaI GGTCTC 1 cut(s) 318
BsaWI WCCGGW 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 223, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 169
BseAI TCCGGA 1 cut(s) 244
BseBI CCWGG 1 cut(s) 81
BseGI GGATG 3 cut(s) 54, 187, 374
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 2 cut(s) 124, 308
BseRI GAGGAG 2 cut(s) 78, 311
BseXI GCAGC 1 cut(s) 219
BseYI CCCAGC 2 cut(s) 150, 272
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 318
Bso31I GGTCTC 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 88
Bsp13I TCCGGA 1 cut(s) 244
Bsp143I GATC 4 cut(s) 14, 106, 241, 336
BspACI CCGC 1 cut(s) 216
BspCNI CTCAG 2 cut(s) 123, 309
BspEI TCCGGA 1 cut(s) 244
BspPI GGATC 4 cut(s) 9, 114, 236, 344
BspQI GCTCTTC 1 cut(s) 317
BspTNI GGTCTC 1 cut(s) 318
BssMI GATC 4 cut(s) 14, 106, 241, 336
Bst2UI CCWGG 1 cut(s) 81
Bst6I CTCTTC 2 cut(s) 257, 317
BstC8I GCNNGC 2 cut(s) 101, 136
BstDEI CTNAG 2 cut(s) 110, 317
BstF5I GGATG 3 cut(s) 54, 187, 374
BstKTI GATC 4 cut(s) 17, 109, 244, 339
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 4 cut(s) 14, 106, 241, 336
BstNI CCWGG 1 cut(s) 81
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 219
BstX2I RGATCY 2 cut(s) 14, 106
BstYI RGATCY 2 cut(s) 14, 106
BtsCI GGATG 3 cut(s) 54, 187, 374
Cac8I GCNNGC 2 cut(s) 101, 136
CsiI ACCWGGT 1 cut(s) 79
Csp6I GTAC 1 cut(s) 277
CviAII CATG 2 cut(s) 24, 100
CviJI RGCY 9 cut(s) 123, 138, 154, 162, 190, 210, 228, 234, 327
CviKI_1 RGCY 9 cut(s) 123, 138, 154, 162, 190, 210, 228, 234, 327
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 2 cut(s) 110, 317
DpnI GATC 4 cut(s) 16, 108, 243, 338
DpnII GATC 4 cut(s) 14, 106, 241, 336
Eam1104I CTCTTC 2 cut(s) 257, 317
EarI CTCTTC 2 cut(s) 257, 317
EciI GGCGGA 1 cut(s) 205
Eco31I GGTCTC 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 79
FaeI CATG 2 cut(s) 27, 103
FaiI YATR 4 cut(s) 25, 69, 101, 132
FatI CATG 2 cut(s) 23, 99
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 208
FokI GGATG 2 cut(s) 61, 194
Fsp4HI GCNGC 1 cut(s) 208
GluI GCNGC 1 cut(s) 208
GsaI CCCAGC 2 cut(s) 154, 276
GsuI CTGGAG 1 cut(s) 250
HapII CCGG 1 cut(s) 245
Hin1II CATG 2 cut(s) 27, 103
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 3 cut(s) 64, 286, 364
Hpy188I TCNGA 4 cut(s) 14, 113, 168, 318
Hpy188III TCNNGA 2 cut(s) 245, 340
Hpy8I GTNNAC 3 cut(s) 64, 286, 364
HpyAV CCTTC 2 cut(s) 172, 196
HpyCH4V TGCA 5 cut(s) 27, 52, 103, 134, 253
HpyF3I CTNAG 2 cut(s) 110, 317
Hsp92II CATG 2 cut(s) 27, 103
Kpn2I TCCGGA 1 cut(s) 244
Kzo9I GATC 4 cut(s) 14, 106, 241, 336
LguI GCTCTTC 1 cut(s) 317
LmnI GCTCC 2 cut(s) 91, 231
LpnPI CCDG 8 cut(s) 66, 89, 93, 120, 164, 214, 258, 258
Lsp1109I GCAGC 1 cut(s) 219
LweI GCATC 1 cut(s) 39
MabI ACCWGGT 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 116
MalI GATC 4 cut(s) 16, 108, 243, 338
MboI GATC 4 cut(s) 14, 106, 241, 336
MboII GAAGA 5 cut(s) 205, 271, 274, 313, 334
MflI RGATCY 2 cut(s) 14, 106
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 1 cut(s) 127
MmeI TCCRAC 1 cut(s) 116
MnlI CCTC 8 cut(s) 39, 65, 99, 229, 249, 258, 289, 312
MroI TCCGGA 1 cut(s) 244
MroXI GAANNNNTTC 1 cut(s) 326
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
NdeII GATC 4 cut(s) 14, 106, 241, 336
NlaIII CATG 2 cut(s) 27, 103
NspI RCATGY 1 cut(s) 103
PaeI GCATGC 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 317
PdmI GAANNNNTTC 1 cut(s) 326
PflMI CCANNNNNTGG 1 cut(s) 169
PkrI GCNGC 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 79
PspFI CCCAGC 2 cut(s) 150, 272
PspGI CCWGG 1 cut(s) 79
PsuI RGATCY 2 cut(s) 14, 106
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SapI GCTCTTC 1 cut(s) 317
SatI GCNGC 1 cut(s) 208
Sau3AI GATC 4 cut(s) 14, 106, 241, 336
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 1 cut(s) 88
SetI ASST 7 cut(s) 85, 125, 192, 230, 236, 329, 350
SexAI ACCWGGT 1 cut(s) 79
SfaNI GCATC 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
SphI GCATGC 1 cut(s) 103
Sse9I AATT 1 cut(s) 127
SsiI CCGC 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 79
TaqI TCGA 1 cut(s) 221
TasI AATT 1 cut(s) 127
TseI GCWGC 1 cut(s) 207
TspDTI ATGAA 1 cut(s) 320
Van91I CCANNNNNTGG 1 cut(s) 169
XceI RCATGY 1 cut(s) 103
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.