Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016371

Physical Location & Seq

Genomic Coordinates Reverse (-)

27342272 .. 27343812

Gene Structure 1541 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g34670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTCCAAAGAGAGAAGAGTCCGCTAAACGAGAAGTGATGAAGATGAAGTCGTTGGAAGCTGTTATGAAGAACACGAAAAGGGAGGTCAATAAGGGAGCTTGGACAGCTGAGGAAGATCAAAAGCTAGCTGAGGTTATTGCCATTCATGGTGCCAAAAAGTGGAAGTCAATTGCAGCCAAAGCAGGGCTGAATCGGTGCGGTAAGAGTTGCAGGCTAAGATGGCTGAACTATCTAAGACCAAACATCAAGAGAGGCAACATATCAGACCAAGAAGAGGATCTGATTCTCAGGCTGCACAAACTACTGGGAAATAGGTGGTCTTTGATTGCCGGAAGATTGCCGGGTCGAACAGACAATGAGATAAAGAACTACTGGAACTCTCATTTGAGCAAGAGAATAAGCCAGATAGAGAAACAAAGAAGTACTGGAGAAACTGACGATTCAACAAGACAAATCCCCACAGTGGACCAAAAACCAAGTAGTCGATTAGGTGAGCAGAATAAAATCTTTGGAGAAATGAAACAAGACTCATCATCAGAAGAGGGTACCACTACCAGTGCTTCTAACAAAGGAGGTGATGATCATGAAGACTACTCAAACTCAGACATTGATATTGATGACTTCTTTGATTTCTCCAATGAAGGGCCTTTCAACTTGGAATGGGTCAACAAGTTCCTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

229

Amino Acids

26.11

Weight (kDa)

8.72

Isoelectric Point (pI)

59.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	32 - 79	4.8e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	35 - 93	5.6e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	85 - 130	1.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	89 - 137	5.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016371)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34670
malus_domestica	MD00G1092300.v1.1 MD09G1183800.v1.1
prunus_persica	Prupe.3G042100_v2.0.a1
pyrus_communis	pycom09g10130
rosa_chinensis	RchiOBHm_Chr2g0145221
rosa_laevigata	RLG00000020133
rosa_multiflora	Rmu_sc0001298.1_g000013
rosa_roxburghii	Rroxscaffold_2G00100780
rosa_rugosa	Rorug02G0391500
rosa_samantha	Rh2AG444200 Rh2BG455100 Rh2CG431100 Rh2DG465100
rosa_wichuraiana	Rw2G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	548
AccB1I	GGYRCC	2 cut(s)	152, 548
AccB7I	CCANNNNNTGG	1 cut(s)	162
AciI	CCGC	2 cut(s)	24, 201
AclWI	GGATC	1 cut(s)	288
AfaI	GTAC	2 cut(s)	427, 550
AfiI	CCNNNNNNNGG	5 cut(s)	162, 186, 277, 466, 645
AgsI	TTSAA	2 cut(s)	447, 655
AluBI	AGCT	5 cut(s)	62, 101, 110, 127, 131
AluI	AGCT	5 cut(s)	62, 101, 110, 127, 131
AlwI	GGATC	1 cut(s)	288
AoxI	GGCC	1 cut(s)	647
ApeKI	GCWGC	2 cut(s)	176, 295
Asp718I	GGTACC	1 cut(s)	548
AspS9I	GGNCC	2 cut(s)	469, 647
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	506, 590
AsuNHI	GCTAGC	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	469
BanI	GGYRCC	2 cut(s)	152, 548
BbsI	GAAGAC	1 cut(s)	597
BbvCI	CCTCAGC	2 cut(s)	111, 132
BbvI	GCAGC	2 cut(s)	188, 282
BccI	CCATC	1 cut(s)	216
BclI	TGATCA	1 cut(s)	583
BcnI	CCSGG	1 cut(s)	345
BfaI	CTAG	2 cut(s)	128, 685
BisI	GCNGC	2 cut(s)	177, 296
BlsI	GCNGC	2 cut(s)	178, 297
BmcAI	AGTACT	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	2 cut(s)	469, 647
BmiI	GGNNCC	3 cut(s)	6, 154, 550
BmrFI	CCNGG	1 cut(s)	345
BmrI	ACTGGG	1 cut(s)	317
BmtI	GCTAGC	1 cut(s)	131
BmuI	ACTGGG	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	597
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	2 cut(s)	111, 132
BpuMI	CCSGG	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	5 cut(s)	162, 186, 277, 466, 645
Bse1I	ACTGG	4 cut(s)	312, 380, 433, 558
BseLI	CCNNNNNNNGG	5 cut(s)	162, 186, 277, 466, 645
BseMII	CTCAG	4 cut(s)	102, 123, 304, 618
BseNI	ACTGG	4 cut(s)	312, 380, 433, 558
BseXI	GCAGC	2 cut(s)	188, 282
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	649
BshNI	GGYRCC	2 cut(s)	152, 548
BsiSI	CCGG	2 cut(s)	333, 344
BslI	CCNNNNNNNGG	5 cut(s)	162, 186, 277, 466, 645
BsnI	GGCC	1 cut(s)	649
Bsp143I	GATC	3 cut(s)	118, 280, 583
BspACI	CCGC	2 cut(s)	24, 201
BspANI	GGCC	1 cut(s)	649
BspCNI	CTCAG	4 cut(s)	103, 124, 303, 617
BspHI	TCATGA	1 cut(s)	586
BspLI	GGNNCC	3 cut(s)	6, 154, 550
BspOI	GCTAGC	1 cut(s)	131
BspPI	GGATC	1 cut(s)	288
BspT107I	GGYRCC	2 cut(s)	152, 548
BsrI	ACTGG	4 cut(s)	312, 380, 433, 558
BssMI	GATC	3 cut(s)	118, 280, 583
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	3 cut(s)	12, 270, 537
BstC8I	GCNNGC	2 cut(s)	129, 215
BstDEI	CTNAG	6 cut(s)	111, 132, 218, 236, 290, 604
BstKTI	GATC	3 cut(s)	121, 283, 586
BstMBI	GATC	3 cut(s)	118, 280, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 182, 223
BstSCI	CCNGG	1 cut(s)	343
BstV1I	GCAGC	2 cut(s)	188, 282
BstV2I	GAAGAC	1 cut(s)	597
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	649
BtsIMutI	CAGTG	2 cut(s)	471, 565
Cac8I	GCNNGC	2 cut(s)	129, 215
CciI	TCATGA	1 cut(s)	586
Cfr13I	GGNCC	2 cut(s)	469, 647
Csp6I	GTAC	2 cut(s)	426, 549
CviAII	CATG	2 cut(s)	149, 587
CviQI	GTAC	2 cut(s)	426, 549
DdeI	CTNAG	6 cut(s)	111, 132, 218, 236, 290, 604
DpnI	GATC	3 cut(s)	120, 282, 585
DpnII	GATC	3 cut(s)	118, 280, 583
Eam1104I	CTCTTC	3 cut(s)	12, 270, 537
EarI	CTCTTC	3 cut(s)	12, 270, 537
Eco47I	GGWCC	1 cut(s)	469
EcoO109I	RGGNCCY	1 cut(s)	647
FaeI	CATG	2 cut(s)	152, 590
FaiI	YATR	4 cut(s)	68, 150, 263, 588
FatI	CATG	2 cut(s)	148, 586
FbaI	TGATCA	1 cut(s)	583
Fnu4HI	GCNGC	2 cut(s)	177, 296
Fsp4HI	GCNGC	2 cut(s)	177, 296
FspBI	CTAG	2 cut(s)	128, 685
GluI	GCNGC	2 cut(s)	177, 296
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	649
HapII	CCGG	2 cut(s)	333, 344
Hin1II	CATG	2 cut(s)	152, 590
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HinfI	GANTC	5 cut(s)	20, 193, 286, 443, 530
HpaII	CCGG	2 cut(s)	333, 344
HphI	GGTGA	2 cut(s)	506, 590
Hpy166II	GTNNAC	2 cut(s)	469, 670
Hpy188I	TCNGA	4 cut(s)	268, 285, 541, 607
Hpy188III	TCNNGA	2 cut(s)	250, 587
Hpy8I	GTNNAC	2 cut(s)	469, 670
HpyAV	CCTTC	1 cut(s)	638
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	3 cut(s)	176, 213, 298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 182, 223
HpyF3I	CTNAG	6 cut(s)	111, 132, 218, 236, 290, 604
Hsp92II	CATG	2 cut(s)	152, 590
KpnI	GGTACC	1 cut(s)	552
Ksp22I	TGATCA	1 cut(s)	583
Kzo9I	GATC	3 cut(s)	118, 280, 583
LmnI	GCTCC	2 cut(s)	10, 98
Lsp1109I	GCAGC	2 cut(s)	188, 282
MaeI	CTAG	2 cut(s)	128, 685
MalI	GATC	3 cut(s)	120, 282, 585
MboI	GATC	3 cut(s)	118, 280, 583
MboII	GAAGA	8 cut(s)	29, 55, 82, 128, 287, 348, 554, 602
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	1 cut(s)	280
MluCI	AATT	1 cut(s)	171
MlyI	GAGTC	2 cut(s)	29, 524
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	7 cut(s)	79, 106, 127, 248, 271, 538, 569
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	2 cut(s)	333, 344
MspR9I	CCNGG	1 cut(s)	345
MunI	CAATTG	1 cut(s)	171
MwoI	GCNNNNNNNGC	3 cut(s)	107, 182, 223
NciI	CCSGG	1 cut(s)	345
NdeII	GATC	3 cut(s)	118, 280, 583
NheI	GCTAGC	1 cut(s)	127
NlaIII	CATG	2 cut(s)	152, 590
NlaIV	GGNNCC	3 cut(s)	6, 154, 550
PagI	TCATGA	1 cut(s)	586
PfeI	GAWTC	3 cut(s)	193, 286, 443
PflMI	CCANNNNNTGG	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	178, 297
PleI	GAGTC	2 cut(s)	28, 524
PpsI	GAGTC	2 cut(s)	28, 524
PspN4I	GGNNCC	3 cut(s)	6, 154, 550
PspPI	GGNCC	2 cut(s)	469, 647
PsuI	RGATCY	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	2 cut(s)	427, 550
RsaNI	GTAC	2 cut(s)	426, 549
SatI	GCNGC	2 cut(s)	177, 296
Sau3AI	GATC	3 cut(s)	118, 280, 583
Sau96I	GGNCC	2 cut(s)	469, 647
ScaI	AGTACT	1 cut(s)	427
SchI	GAGTC	2 cut(s)	29, 524
ScrFI	CCNGG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	469
Sse9I	AATT	1 cut(s)	171
SsiI	CCGC	2 cut(s)	24, 201
SspMI	CTAG	2 cut(s)	128, 685
StyD4I	CCNGG	1 cut(s)	343
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	2 cut(s)	349, 487
TasI	AATT	1 cut(s)	171
TatI	WGTACW	1 cut(s)	425
TfiI	GAWTC	3 cut(s)	193, 286, 443
TscAI	CASTG	2 cut(s)	471, 565
TseI	GCWGC	2 cut(s)	176, 295
TspDTI	ATGAA	7 cut(s)	56, 62, 83, 137, 536, 603, 657
TspRI	CASTG	2 cut(s)	471, 565
Van91I	CCANNNNNTGG	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	469
XspI	CTAG	2 cut(s)	128, 685
ZrmI	AGTACT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.