Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0016371

Physical Location & Seq

Genomic Coordinates Reverse (-)

50164537 .. 50166231

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0391500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1695 bp

ATGCAGACTGCCAAGATTCCCGTTTCTACTTGTGATGCTTTAGATAAACTTAACAGGAATTTTCTTTGGGGTGATAGTGACGACAAAAGGAAAATACACTTGGTAAATTGGGACAATGTTTGCAGACCTAAAATTAGGGGTGGCTTGGGCATTAAGAGGACAGCTGATATGAATAAAGCCATGTTGGCTAAGGTTAGTTGGAGAATTCTACAAAATGATGATGGTCTCTGGTGTAATTTGTACAAAGCTAAGTATCTGAAGCATGTTTGTTTGATTAGCAATCACTATAAACTCCCTGATAAGTGCTCTGCTACTTGGCGTAGTATTTGCTCTGGTGCTACTCTATTAAGACAAGGAATTATATGGAGAATTAGTGATGGTGGCACTGCTCGCTTTTGGACTGACCATTGGTCCTTTCATGGAATCTTGGCTCCTCTGGCTATTGATCCCAACATGGTGGATCCCAACCTACTAGTTCAGGATTTTTGGAATGGTTATGATTGGGATATTACAATGGTCTATGCATGTTTACCTCCTGAAGTTGCAGCTAAAATTATTTGCGTCCCTATTGATAATTTTGGTTGCACTCCTGATAAGATGATCTGGAAGCCCACACCTGATGGCAAATTTTCTGTGAAAAGTGCCTATAATAGCATTGTTGATGATGGTCAACCTAGTGGTGGTCTTTGGAAAGGTATCTGGAGCTTAAATATCCATCCTAAATTAAAAATCTTCACTTGGCTCTTTGTTAGAGGGAGGCTGTTGACTAATATGCACCGAGCACAGAGACACCTTACTATGAACCCAAACTGTAAACATTGCCCTGAGGAACCTGAATCTATGATCCATCTTTTCAGGGATTGTCTCATGACTTCTACTGTTTGGAATGAAATTGGAATGCCCGCTAGCATTGCTAGGACTTTCAAGCTTGACTGGAATACTTGGATAGCAGCTAACCTTTTGCAAAAAAACTGTAAGTTTTTGGGATTTGAATGGTCTCATTTGTTCATTTACACCTGTTGGTTTATTTGGAAATGGCGCAACAAGTATATTTTTGATGATGGTTTCCAACGACCTCATAATACTGCTTCCATTATAATCCAGTACATTAGAGAATGGAGCTCTTGTCACATAAACTCTAAGATTATTTCTATCCGTAGAACTGAGATGTTGTGTTGGCAAAAGCCTTCTGTTGGCCAATTCAAATTAAATGTGGATGGATCCCGAACCAATAATGGTTTAATTGGTGCTGGTGGGGTCATAAGAGACAGCTCAAGAATTTGGCATCATGGCTTTATGCAGAACATTGGTAGTGGTGATGTTCTTCAAGCTGAAGCTTGGGGCTTGTTTACAGCTTTGCAGATTGTCATTGAGCTTAAGATCAAGCATATTGCTGTGGAAACTGACTCTGCTACCCTTTTGAATCTAATGATGAGTGCTGACATTGATCTCCATCCTTTGGGTACTCTGCTTTCTAATTGTAAGATTATGCTTACATCTTTTGAATCCTATTCTATTCAGCAAATTCATCGAGAGAGAAATATGGTTGCAGATGGTTTAGCCAAAAGAAGTACTGATCAGGAGTTAGGGCTTTGCAGATGTCCTTCCATTCCTCCCTTTGTCTATCAGGCTGTGATGGATGATATTGATGGCATTTCTAGGCCTAGAACCTTTATGTCGTCTGTGATAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

564

Amino Acids

64.58

Weight (kDa)

8.86

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	210 - 295	4.2e-19	zinc-binding in reverse transcriptase
RVT_3	PF13456	404 - 523	1.4e-21	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016371)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34670
malus_domestica	MD00G1092300.v1.1 MD09G1183800.v1.1
prunus_persica	Prupe.3G042100_v2.0.a1
pyrus_communis	pycom09g10130
rosa_chinensis	RchiOBHm_Chr2g0145221
rosa_laevigata	RLG00000020133
rosa_multiflora	Rmu_sc0001298.1_g000013
rosa_roxburghii	Rroxscaffold_2G00100780
rosa_rugosa	Rorug02G0391500
rosa_samantha	Rh2AG444200 Rh2BG455100 Rh2CG431100 Rh2DG465100
rosa_wichuraiana	Rw2G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1097
AccB7I	CCANNNNNTGG	1 cut(s)	1459
AciI	CCGC	1 cut(s)	903
AclWI	GGATC	6 cut(s)	440, 455, 468, 838, 1215, 1228
AcoI	YGGCCR	1 cut(s)	1195
AcsI	RAATTY	5 cut(s)	58, 204, 626, 1278, 1524
AcuI	CTGAAG	3 cut(s)	278, 558, 1353
AfaI	GTAC	4 cut(s)	242, 1106, 1465, 1573
AfiI	CCNNNNNNNGG	3 cut(s)	680, 1193, 1459
AflII	CTTAAG	1 cut(s)	1376
AgsI	TTSAA	6 cut(s)	925, 992, 1204, 1328, 1423, 1505
AhdI	GACNNNNNGTC	1 cut(s)	409
AhlI	ACTAGT	1 cut(s)	472
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
Alw21I	GWGCWC	3 cut(s)	308, 784, 1124
Alw26I	GTCTC	5 cut(s)	230, 781, 869, 1002, 1260
AlwI	GGATC	6 cut(s)	440, 455, 468, 838, 1215, 1228
AoxI	GGCC	2 cut(s)	1195, 1661
ApeKI	GCWGC	2 cut(s)	545, 950
ApoI	RAATTY	5 cut(s)	58, 204, 626, 1278, 1524
AspLEI	GCGC	1 cut(s)	1041
AspS9I	GGNCC	1 cut(s)	411
AsuHPI	GGTGA	2 cut(s)	83, 1328
AsuNHI	GCTAGC	1 cut(s)	905
AvaII	GGWCC	1 cut(s)	411
AxyI	CCTNAGG	1 cut(s)	825
BalI	TGGCCA	1 cut(s)	1197
BamHI	GGATCC	2 cut(s)	460, 1220
BanII	GRGCYC	1 cut(s)	1124
Bbv12I	GWGCWC	3 cut(s)	308, 784, 1124
BbvI	GCAGC	2 cut(s)	557, 962
BcgI	CGANNNNNNTGC	2 cut(s)	1511, 1545
BclI	TGATCA	1 cut(s)	1576
BcoDI	GTCTC	5 cut(s)	230, 781, 869, 1002, 1260
BcuI	ACTAGT	1 cut(s)	472
BfaI	CTAG	7 cut(s)	473, 675, 906, 915, 1659, 1665, 1693
BfrI	CTTAAG	1 cut(s)	1376
BglI	GCCNNNNNGGC	1 cut(s)	185
BisI	GCNGC	2 cut(s)	546, 951
BlsI	GCNGC	2 cut(s)	547, 952
BmcAI	AGTACT	1 cut(s)	1573
Bme18I	GGWCC	1 cut(s)	411
BmeRI	GACNNNNNGTC	1 cut(s)	409
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	4 cut(s)	432, 462, 831, 1222
BmsI	GCATC	2 cut(s)	25, 1294
BmtI	GCTAGC	1 cut(s)	909
BpmI	CTGGAG	1 cut(s)	721
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	1258
BsaBI	GATNNNNATC	1 cut(s)	1452
BsaI	GGTCTC	2 cut(s)	230, 1002
BsaXI	ACNNNNNCTCC	4 cut(s)	358, 388, 1111, 1141
Bsc4I	CCNNNNNNNGG	3 cut(s)	680, 1193, 1459
Bse1I	ACTGG	2 cut(s)	938, 1102
Bse21I	CCTNAGG	1 cut(s)	825
Bse3DI	GCAATG	2 cut(s)	817, 909
Bse8I	GATNNNNATC	1 cut(s)	1452
BseGI	GGATG	4 cut(s)	715, 1222, 1453, 1645
BseJI	GATNNNNATC	1 cut(s)	1452
BseLI	CCNNNNNNNGG	3 cut(s)	680, 1193, 1459
BseMI	GCAATG	2 cut(s)	817, 909
BseMII	CTCAG	2 cut(s)	816, 1155
BseNI	ACTGG	2 cut(s)	938, 1102
BseRI	GAGGAG	1 cut(s)	423
BseXI	GCAGC	2 cut(s)	557, 962
BshFI	GGCC	2 cut(s)	1197, 1663
BsiHKAI	GWGCWC	3 cut(s)	308, 784, 1124
BslFI	GGGAC	2 cut(s)	125, 548
BslI	CCNNNNNNNGG	3 cut(s)	680, 1193, 1459
BsmAI	GTCTC	5 cut(s)	230, 781, 869, 1002, 1260
BsmFI	GGGAC	2 cut(s)	125, 548
BsmI	GAATGC	1 cut(s)	903
BsnI	GGCC	2 cut(s)	1197, 1663
Bso31I	GGTCTC	2 cut(s)	230, 1002
Bsp1286I	GDGCHC	3 cut(s)	308, 784, 1124
Bsp1407I	TGTACA	1 cut(s)	240
Bsp143I	GATC	8 cut(s)	445, 460, 600, 843, 1220, 1380, 1447, 1576
BspACI	CCGC	1 cut(s)	903
BspANI	GGCC	2 cut(s)	1197, 1663
BspCNI	CTCAG	2 cut(s)	817, 1156
BspHI	TCATGA	1 cut(s)	867
BspLI	GGNNCC	4 cut(s)	432, 462, 831, 1222
BspOI	GCTAGC	1 cut(s)	909
BspPI	GGATC	6 cut(s)	440, 455, 468, 838, 1215, 1228
BspTI	CTTAAG	1 cut(s)	1376
BspTNI	GGTCTC	2 cut(s)	230, 1002
BsrDI	GCAATG	2 cut(s)	817, 909
BsrGI	TGTACA	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	938, 1102
BssMI	GATC	8 cut(s)	445, 460, 600, 843, 1220, 1380, 1447, 1576
Bst4CI	ACNGT	3 cut(s)	812, 880, 974
BstAFI	CTTAAG	1 cut(s)	1376
BstAUI	TGTACA	1 cut(s)	240
BstC8I	GCNNGC	3 cut(s)	391, 903, 907
BstDEI	CTNAG	5 cut(s)	189, 249, 825, 1140, 1164
BstF5I	GGATG	4 cut(s)	715, 1222, 1453, 1645
BstHHI	GCGC	1 cut(s)	1041
BstKTI	GATC	8 cut(s)	448, 463, 603, 846, 1223, 1383, 1450, 1579
BstMAI	GTCTC	5 cut(s)	230, 781, 869, 1002, 1260
BstMBI	GATC	8 cut(s)	445, 460, 600, 843, 1220, 1380, 1447, 1576
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 390, 437, 911
BstNSI	RCATGY	2 cut(s)	266, 528
BstV1I	GCAGC	2 cut(s)	557, 962
BstX2I	RGATCY	2 cut(s)	460, 1220
BstXI	CCANNNNNNTGG	1 cut(s)	457
BstYI	RGATCY	2 cut(s)	460, 1220
Bsu36I	CCTNAGG	1 cut(s)	825
BsuRI	GGCC	2 cut(s)	1197, 1663
BtsCI	GGATG	4 cut(s)	715, 1222, 1453, 1645
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	3 cut(s)	391, 903, 907
CciI	TCATGA	1 cut(s)	867
CfoI	GCGC	1 cut(s)	1041
Cfr13I	GGNCC	1 cut(s)	411
CseI	GACGC	1 cut(s)	550
Csp6I	GTAC	4 cut(s)	241, 1105, 1464, 1572
CviAII	CATG	7 cut(s)	181, 263, 419, 454, 525, 868, 1289
CviQI	GTAC	4 cut(s)	241, 1105, 1464, 1572
DdeI	CTNAG	5 cut(s)	189, 249, 825, 1140, 1164
DpnI	GATC	8 cut(s)	447, 462, 602, 845, 1222, 1382, 1449, 1578
DpnII	GATC	8 cut(s)	445, 460, 600, 843, 1220, 1380, 1447, 1576
DriI	GACNNNNNGTC	1 cut(s)	409
EaeI	YGGCCR	1 cut(s)	1195
Eam1105I	GACNNNNNGTC	1 cut(s)	409
Ecl136II	GAGCTC	1 cut(s)	1122
Eco147I	AGGCCT	1 cut(s)	1663
Eco24I	GRGCYC	1 cut(s)	1124
Eco31I	GGTCTC	2 cut(s)	230, 1002
Eco47I	GGWCC	1 cut(s)	411
Eco53kI	GAGCTC	1 cut(s)	1122
Eco57I	CTGAAG	3 cut(s)	278, 558, 1353
Eco81I	CCTNAGG	1 cut(s)	825
EcoICRI	GAGCTC	1 cut(s)	1122
EcoRI	GAATTC	1 cut(s)	204
EcoT22I	ATGCAT	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	1124
FaeI	CATG	7 cut(s)	184, 266, 422, 457, 528, 871, 1292
FaqI	GGGAC	2 cut(s)	125, 548
FatI	CATG	7 cut(s)	180, 262, 418, 453, 524, 867, 1288
FauI	CCCGC	1 cut(s)	910
FbaI	TGATCA	1 cut(s)	1576
Fnu4HI	GCNGC	2 cut(s)	546, 951
FokI	GGATG	4 cut(s)	702, 1229, 1440, 1652
FriOI	GRGCYC	1 cut(s)	1124
Fsp4HI	GCNGC	2 cut(s)	546, 951
FspBI	CTAG	7 cut(s)	473, 675, 906, 915, 1659, 1665, 1693
GlaI	GCGC	1 cut(s)	1040
GluI	GCNGC	2 cut(s)	546, 951
GsuI	CTGGAG	1 cut(s)	721
HaeIII	GGCC	2 cut(s)	1197, 1663
HgaI	GACGC	1 cut(s)	550
HhaI	GCGC	1 cut(s)	1041
Hin1II	CATG	7 cut(s)	184, 266, 422, 457, 528, 871, 1292
Hin6I	GCGC	1 cut(s)	1039
HinP1I	GCGC	1 cut(s)	1039
HincII	GTYRAC	2 cut(s)	671, 765
HindII	GTYRAC	2 cut(s)	671, 765
HindIII	AAGCTT	2 cut(s)	926, 1335
HinfI	GANTC	6 cut(s)	16, 423, 836, 1406, 1423, 1505
HphI	GGTGA	2 cut(s)	83, 1328
Hpy166II	GTNNAC	5 cut(s)	530, 671, 765, 815, 1350
Hpy188I	TCNGA	1 cut(s)	258
Hpy8I	GTNNAC	5 cut(s)	530, 671, 765, 815, 1350
HpyAV	CCTTC	2 cut(s)	1197, 1614
HpyCH4III	ACNGT	3 cut(s)	812, 880, 974
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 390, 437, 911
HpyF3I	CTNAG	5 cut(s)	189, 249, 825, 1140, 1164
Hsp92II	CATG	7 cut(s)	184, 266, 422, 457, 528, 871, 1292
HspAI	GCGC	1 cut(s)	1039
Ksp22I	TGATCA	1 cut(s)	1576
Kzo9I	GATC	8 cut(s)	445, 460, 600, 843, 1220, 1380, 1447, 1576
LmnI	GCTCC	3 cut(s)	436, 702, 1119
Lsp1109I	GCAGC	2 cut(s)	557, 962
LweI	GCATC	2 cut(s)	25, 1294
MaeI	CTAG	7 cut(s)	473, 675, 906, 915, 1659, 1665, 1693
MaeIII	GTNAC	2 cut(s)	77, 1127
MalI	GATC	8 cut(s)	447, 462, 602, 845, 1222, 1382, 1449, 1578
MboI	GATC	8 cut(s)	445, 460, 600, 843, 1220, 1380, 1447, 1576
MboII	GAAGA	2 cut(s)	724, 1316
MflI	RGATCY	2 cut(s)	460, 1220
MhlI	GDGCHC	3 cut(s)	308, 784, 1124
MlsI	TGGCCA	1 cut(s)	1197
MluNI	TGGCCA	1 cut(s)	1197
MlyI	GAGTC	1 cut(s)	1400
MmeI	TCCRAC	2 cut(s)	179, 1093
MnlI	CCTC	8 cut(s)	150, 444, 543, 746, 750, 820, 1086, 1623
Mox20I	TGGCCA	1 cut(s)	1197
Mph1103I	ATGCAT	1 cut(s)	526
MscI	TGGCCA	1 cut(s)	1197
MseI	TTAA	8 cut(s)	51, 153, 347, 707, 725, 1208, 1241, 1377
Msp20I	TGGCCA	1 cut(s)	1197
MspA1I	CMGCKG	1 cut(s)	164
MspCI	CTTAAG	1 cut(s)	1376
Mva1269I	GAATGC	1 cut(s)	903
MwoI	GCNNNNNNNGC	4 cut(s)	185, 390, 437, 911
NdeII	GATC	8 cut(s)	445, 460, 600, 843, 1220, 1380, 1447, 1576
NheI	GCTAGC	1 cut(s)	905
NlaIII	CATG	7 cut(s)	184, 266, 422, 457, 528, 871, 1292
NlaIV	GGNNCC	4 cut(s)	432, 462, 831, 1222
NmuCI	GTSAC	2 cut(s)	77, 1127
NsiI	ATGCAT	1 cut(s)	526
NspI	RCATGY	2 cut(s)	266, 528
PagI	TCATGA	1 cut(s)	867
PceI	AGGCCT	1 cut(s)	1663
PctI	GAATGC	1 cut(s)	903
PfeI	GAWTC	5 cut(s)	16, 423, 836, 1423, 1505
PflMI	CCANNNNNTGG	1 cut(s)	1459
PkrI	GCNGC	2 cut(s)	547, 952
PleI	GAGTC	1 cut(s)	1400
PpsI	GAGTC	1 cut(s)	1400
PsiI	TTATAA	1 cut(s)	1097
Psp124BI	GAGCTC	1 cut(s)	1124
PspN4I	GGNNCC	4 cut(s)	432, 462, 831, 1222
PspPI	GGNCC	1 cut(s)	411
PsuI	RGATCY	2 cut(s)	460, 1220
PvuII	CAGCTG	1 cut(s)	164
RsaI	GTAC	4 cut(s)	242, 1106, 1465, 1573
RsaNI	GTAC	4 cut(s)	241, 1105, 1464, 1572
SacI	GAGCTC	1 cut(s)	1124
SaqAI	TTAA	8 cut(s)	51, 153, 347, 707, 725, 1208, 1241, 1377
SatI	GCNGC	2 cut(s)	546, 951
Sau3AI	GATC	8 cut(s)	445, 460, 600, 843, 1220, 1380, 1447, 1576
Sau96I	GGNCC	1 cut(s)	411
ScaI	AGTACT	1 cut(s)	1573
SchI	GAGTC	1 cut(s)	1400
SduI	GDGCHC	3 cut(s)	308, 784, 1124
SfaNI	GCATC	2 cut(s)	25, 1294
SinI	GGWCC	1 cut(s)	411
SmlI	CTYRAG	2 cut(s)	1273, 1376
SmoI	CTYRAG	2 cut(s)	1273, 1376
SpeI	ACTAGT	1 cut(s)	472
SseBI	AGGCCT	1 cut(s)	1663
SsiI	CCGC	1 cut(s)	903
SspMI	CTAG	7 cut(s)	473, 675, 906, 915, 1659, 1665, 1693
SstI	GAGCTC	1 cut(s)	1124
StuI	AGGCCT	1 cut(s)	1663
TaaI	ACNGT	3 cut(s)	812, 880, 974
TaqI	TCGA	1 cut(s)	1531
TatI	WGTACW	3 cut(s)	240, 1104, 1571
TfiI	GAWTC	5 cut(s)	16, 423, 836, 1423, 1505
Tru1I	TTAA	8 cut(s)	51, 153, 347, 707, 725, 1208, 1241, 1377
Tru9I	TTAA	8 cut(s)	51, 153, 347, 707, 725, 1208, 1241, 1377
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	2 cut(s)	77, 1127
TseI	GCWGC	2 cut(s)	545, 950
Tsp45I	GTSAC	2 cut(s)	77, 1127
TspDTI	ATGAA	6 cut(s)	185, 407, 815, 903, 997, 1517
TspGWI	ACGGA	1 cut(s)	1145
TspRI	CASTG	1 cut(s)	391
Van91I	CCANNNNNTGG	1 cut(s)	1459
Vha464I	CTTAAG	1 cut(s)	1376
VpaK11BI	GGWCC	1 cut(s)	411
XapI	RAATTY	5 cut(s)	58, 204, 626, 1278, 1524
XceI	RCATGY	2 cut(s)	266, 528
XspI	CTAG	7 cut(s)	473, 675, 906, 915, 1659, 1665, 1693
ZrmI	AGTACT	1 cut(s)	1573
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.