Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0016371

Physical Location & Seq

Genomic Coordinates Forward (+)

15852251 .. 15853812

Gene Structure 1562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1183800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGATCCTGTGACAAAAGGCTCCATTAATAGACGGAAAGTGAAGGGAGTTGAAGCCATGAAAAACACAAAAAGGGAAGTCAACAGGGGAGCATGGACAGCAGAAGAAGATCAGAAACTGGCTGAGGTTATTGAAATACATGGTGCAAAAAGGTGGAAGACAATTGCATCTAAAGCAGGCCTCAATAGGTGTGGTAAAAGTTGCAGGCTAAGATGGTTGAACTATCTCAGACCAAACATCAAGAGAGGCAACATATCTGAGCAAGAAGAGGACTTGATCGTTAGGCTTCACAAACTTCTTGGAAATAGGTGGTCTTTGATTGCCGGGCGATTGCCGGGTCGAACAGATAATGAAATAAAAAACTACTGGAATTCTCATTTGAGCAAGAGAATGAACCAGAAGGAGAAGCAAAATGGAGCCAATTTAACAAGACAAATGATCTCCACAGATCATCAGAAGGATCGTGTACAAATGAAAGAAGATTCGTCATCGGAAGAGGGTGCTACTAGTACTAGTACTAGTACTACAAGTGCTGCATCTAAAGGAGGTGATCAAAACTCCAACATTAATATTGATGTGGATGATTTCTTTGATTTCTCCAATGAGGGGCTTTTGAATTTGGAGTGGGTGAGCAAGTTCCTTGGACAAGATGATGGCAGATGGTTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

224

Amino Acids

25.44

Weight (kDa)

9.51

Isoelectric Point (pI)

52.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	29 - 76	2.6e-19	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	32 - 90	8.2e-15	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	82 - 127	5.8e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	86 - 134	3.6e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016371)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34670
malus_domestica	MD00G1092300.v1.1 MD09G1183800.v1.1
prunus_persica	Prupe.3G042100_v2.0.a1
pyrus_communis	pycom09g10130
rosa_chinensis	RchiOBHm_Chr2g0145221
rosa_laevigata	RLG00000020133
rosa_multiflora	Rmu_sc0001298.1_g000013
rosa_roxburghii	Rroxscaffold_2G00100780
rosa_rugosa	Rorug02G0391500
rosa_samantha	Rh2AG444200 Rh2BG455100 Rh2CG431100 Rh2DG465100
rosa_wichuraiana	Rw2G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	12, 468
AcsI	RAATTY	2 cut(s)	370, 616
AfaI	GTAC	4 cut(s)	468, 511, 517, 523
AfiI	CCNNNNNNNGG	1 cut(s)	606
AgsI	TTSAA	4 cut(s)	53, 134, 220, 616
AhlI	ACTAGT	3 cut(s)	506, 512, 518
AlwI	GGATC	2 cut(s)	12, 468
AlwNI	CAGNNNCTG	1 cut(s)	118
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	533
ApoI	RAATTY	2 cut(s)	370, 616
AseI	ATTAAT	2 cut(s)	27, 567
AsuC2I	CCSGG	2 cut(s)	325, 336
AsuHPI	GGTGA	2 cut(s)	560, 640
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	164
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	3 cut(s)	207, 647, 654
BclI	TGATCA	1 cut(s)	550
BcnI	CCSGG	2 cut(s)	325, 336
BcuI	ACTAGT	3 cut(s)	506, 512, 518
BfaI	CTAG	3 cut(s)	507, 513, 519
BisI	GCNGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	535
BmcAI	AGTACT	3 cut(s)	511, 517, 523
Bme1390I	CCNGG	2 cut(s)	325, 336
BmiI	GGNNCC	3 cut(s)	6, 22, 418
BmrFI	CCNGG	2 cut(s)	325, 336
BmsI	GCATC	2 cut(s)	176, 545
BpiI	GAAGAC	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	123
BpuMI	CCSGG	2 cut(s)	325, 336
BsaJI	CCNNGG	1 cut(s)	640
Bsc4I	CCNNNNNNNGG	1 cut(s)	606
Bse1I	ACTGG	2 cut(s)	123, 371
BseDI	CCNNGG	1 cut(s)	640
BseGI	GGATG	1 cut(s)	586
BseLI	CCNNNNNNNGG	1 cut(s)	606
BseMII	CTCAG	3 cut(s)	114, 241, 249
BseNI	ACTGG	2 cut(s)	123, 371
BseXI	GCAGC	1 cut(s)	520
BshFI	GGCC	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	324, 335
BslI	CCNNNNNNNGG	1 cut(s)	606
BsnI	GGCC	1 cut(s)	180
Bsp1407I	TGTACA	1 cut(s)	466
Bsp143I	GATC	7 cut(s)	4, 109, 276, 438, 448, 460, 550
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	3 cut(s)	115, 240, 250
BspLI	GGNNCC	3 cut(s)	6, 22, 418
BspPI	GGATC	2 cut(s)	12, 468
BsrGI	TGTACA	1 cut(s)	466
BsrI	ACTGG	2 cut(s)	123, 371
BssECI	CCNNGG	1 cut(s)	640
BssMI	GATC	7 cut(s)	4, 109, 276, 438, 448, 460, 550
BssT1I	CCWWGG	1 cut(s)	640
Bst6I	CTCTTC	2 cut(s)	261, 489
BstAUI	TGTACA	1 cut(s)	466
BstC8I	GCNNGC	2 cut(s)	178, 206
BstDEI	CTNAG	4 cut(s)	123, 209, 227, 258
BstF5I	GGATG	1 cut(s)	586
BstKTI	GATC	7 cut(s)	7, 112, 279, 441, 451, 463, 553
BstMBI	GATC	7 cut(s)	4, 109, 276, 438, 448, 460, 550
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 173
BstSCI	CCNGG	2 cut(s)	323, 334
BstV1I	GCAGC	1 cut(s)	520
BstV2I	GAAGAC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	586
Cac8I	GCNNGC	2 cut(s)	178, 206
CaiI	CAGNNNCTG	1 cut(s)	118
Csp6I	GTAC	4 cut(s)	467, 510, 516, 522
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviAII	CATG	3 cut(s)	58, 93, 140
CviJI	RGCY	8 cut(s)	21, 56, 122, 180, 208, 286, 419, 610
CviKI_1	RGCY	8 cut(s)	21, 56, 122, 180, 208, 286, 419, 610
CviQI	GTAC	4 cut(s)	467, 510, 516, 522
DdeI	CTNAG	4 cut(s)	123, 209, 227, 258
DpnI	GATC	7 cut(s)	6, 111, 278, 440, 450, 462, 552
DpnII	GATC	7 cut(s)	4, 109, 276, 438, 448, 460, 550
Eam1104I	CTCTTC	2 cut(s)	261, 489
EarI	CTCTTC	2 cut(s)	261, 489
Eco130I	CCWWGG	1 cut(s)	640
Eco147I	AGGCCT	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	640
ErhI	CCWWGG	1 cut(s)	640
FaeI	CATG	3 cut(s)	61, 96, 143
FaiI	YATR	4 cut(s)	59, 94, 141, 254
FatI	CATG	3 cut(s)	57, 92, 139
FbaI	TGATCA	1 cut(s)	550
Fnu4HI	GCNGC	1 cut(s)	534
FokI	GGATG	1 cut(s)	593
Fsp4HI	GCNGC	1 cut(s)	534
FspBI	CTAG	3 cut(s)	507, 513, 519
GluI	GCNGC	1 cut(s)	534
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	2 cut(s)	324, 335
Hin1II	CATG	3 cut(s)	61, 96, 143
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	1 cut(s)	482
HpaII	CCGG	2 cut(s)	324, 335
HphI	GGTGA	2 cut(s)	560, 640
Hpy166II	GTNNAC	2 cut(s)	82, 467
Hpy188I	TCNGA	5 cut(s)	114, 230, 259, 456, 493
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	2 cut(s)	82, 467
HpyAV	CCTTC	3 cut(s)	37, 394, 451
HpyCH4V	TGCA	4 cut(s)	146, 167, 204, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 173
HpyF3I	CTNAG	4 cut(s)	123, 209, 227, 258
Hsp92II	CATG	3 cut(s)	61, 96, 143
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	7 cut(s)	4, 109, 276, 438, 448, 460, 550
LmnI	GCTCC	3 cut(s)	26, 89, 416
LpnPI	CCDG	9 cut(s)	21, 70, 104, 162, 190, 337, 348, 352, 410
Lsp1109I	GCAGC	1 cut(s)	520
LweI	GCATC	2 cut(s)	176, 545
MaeI	CTAG	3 cut(s)	507, 513, 519
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	7 cut(s)	6, 111, 278, 440, 450, 462, 552
MboI	GATC	7 cut(s)	4, 109, 276, 438, 448, 460, 550
MboII	GAAGA	6 cut(s)	116, 119, 169, 278, 491, 506
MfeI	CAATTG	1 cut(s)	162
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	4 cut(s)	162, 370, 421, 616
MmeI	TCCRAC	1 cut(s)	585
MnlI	CCTC	7 cut(s)	118, 191, 239, 262, 490, 539, 598
MseI	TTAA	4 cut(s)	27, 425, 567, 666
MspI	CCGG	2 cut(s)	324, 335
MspR9I	CCNGG	2 cut(s)	325, 336
MunI	CAATTG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	98, 173
NciI	CCSGG	2 cut(s)	325, 336
NdeII	GATC	7 cut(s)	4, 109, 276, 438, 448, 460, 550
NlaIII	CATG	3 cut(s)	61, 96, 143
NlaIV	GGNNCC	3 cut(s)	6, 22, 418
NmuCI	GTSAC	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	482
PkrI	GCNGC	1 cut(s)	535
PshBI	ATTAAT	2 cut(s)	27, 567
PspN4I	GGNNCC	3 cut(s)	6, 22, 418
PstNI	CAGNNNCTG	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	4 cut(s)	468, 511, 517, 523
RsaNI	GTAC	4 cut(s)	467, 510, 516, 522
SaqAI	TTAA	4 cut(s)	27, 425, 567, 666
SatI	GCNGC	1 cut(s)	534
Sau3AI	GATC	7 cut(s)	4, 109, 276, 438, 448, 460, 550
ScaI	AGTACT	3 cut(s)	511, 517, 523
ScrFI	CCNGG	2 cut(s)	325, 336
SetI	ASST	5 cut(s)	129, 155, 191, 311, 550
SfaNI	GCATC	2 cut(s)	176, 545
SpeI	ACTAGT	3 cut(s)	506, 512, 518
Sse9I	AATT	4 cut(s)	162, 370, 421, 616
SseBI	AGGCCT	1 cut(s)	180
SspI	AATATT	1 cut(s)	571
SspMI	CTAG	3 cut(s)	507, 513, 519
StuI	AGGCCT	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	323, 334
StyI	CCWWGG	1 cut(s)	640
TaqI	TCGA	1 cut(s)	340
TasI	AATT	4 cut(s)	162, 370, 421, 616
TatI	WGTACW	4 cut(s)	466, 509, 515, 521
TfiI	GAWTC	1 cut(s)	482
Tru1I	TTAA	4 cut(s)	27, 425, 567, 666
Tru9I	TTAA	4 cut(s)	27, 425, 567, 666
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	4 cut(s)	74, 366, 407, 488
TspGWI	ACGGA	1 cut(s)	49
VspI	ATTAAT	2 cut(s)	27, 567
XapI	RAATTY	2 cut(s)	370, 616
XspI	CTAG	3 cut(s)	507, 513, 519
ZrmI	AGTACT	3 cut(s)	511, 517, 523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.