Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0016371

Physical Location & Seq

Genomic Coordinates Reverse (-)

59633806 .. 59634902

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G036300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTCCAAAGAAAGAAGAGTCCGCTAAACGAGAAGTGATGAAGATGAAGTCGTTGGAAGCTGTTATGAAAAACACGAAGAGGGAGGTCAACAAGGGAGCTTGGACAGCTGAGGAAGATCAGAAGCTAGCTGAGGTTACTGCAATTCATGGTGCTAAAAAGTGGAAGTCAATTGCAGCCAAAGCAGGGCTGAATCGGTGTGGGAAGAGTTGCAGGCTAAGATGGCTGAACTATCTAAGGCCAAACATCAAGAGAGGCAACATATCTGACCAAGAAGAGGACTTGATTCTCAGGCTGCACAAACTCCTTGGAAATAGGTGGTCTTTGATTGCCGGAAGATTGCCGGGTCGAACAGACAATGAGATAAAGAACTACTGGAACTCTCATTTGAGCAAGAGAATAAACCAGAAAGAGAAACAAAGAAATACTGGAGGAGATGATGATTCAACAAGACAAATCTCCACAGTGGACCAGAAACCTGGTACCCATTTAGGTGAGCAGAATAAAATCCATGGAGAAATGAAACAAGACTCATCATCAGAAGAGGGTACGACTACTACTACCACCACCAGTGCTTCAAATAAAGGAGGTGATGATCATGAAAACTACTCAAACTTAGACATTGATATTGATGACTTCTTTGATTTCTCCAATGAAGGTCCTTTCAATTTGGAATGGGTCAACAAGTTCCTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

232

Amino Acids

26.45

Weight (kDa)

8.9

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	32 - 79	6e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	35 - 93	1.2e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	85 - 130	1.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	89 - 137	4.7e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016371)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34670
malus_domestica	MD00G1092300.v1.1 MD09G1183800.v1.1
prunus_persica	Prupe.3G042100_v2.0.a1
pyrus_communis	pycom09g10130
rosa_chinensis	RchiOBHm_Chr2g0145221
rosa_laevigata	RLG00000020133
rosa_multiflora	Rmu_sc0001298.1_g000013
rosa_roxburghii	Rroxscaffold_2G00100780
rosa_rugosa	Rorug02G0391500
rosa_samantha	Rh2AG444200 Rh2BG455100 Rh2CG431100 Rh2DG465100
rosa_wichuraiana	Rw2G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	482
AccB1I	GGYRCC	1 cut(s)	482
AciI	CCGC	1 cut(s)	24
AfaI	GTAC	2 cut(s)	484, 550
AfiI	CCNNNNNNNGG	2 cut(s)	186, 277
AgsI	TTSAA	3 cut(s)	447, 579, 667
AjnI	CCWGG	1 cut(s)	478
AluBI	AGCT	5 cut(s)	62, 101, 110, 127, 131
AluI	AGCT	5 cut(s)	62, 101, 110, 127, 131
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	176, 295
Asp718I	GGTACC	1 cut(s)	482
AspS9I	GGNCC	2 cut(s)	469, 659
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	506, 602
AsuNHI	GCTAGC	1 cut(s)	127
AvaII	GGWCC	2 cut(s)	469, 659
BanI	GGYRCC	1 cut(s)	482
BbvCI	CCTCAGC	2 cut(s)	111, 132
BbvI	GCAGC	2 cut(s)	188, 282
BccI	CCATC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	480
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	345
BfaI	CTAG	2 cut(s)	128, 697
BisI	GCNGC	2 cut(s)	177, 296
BlsI	GCNGC	2 cut(s)	178, 297
Bme1390I	CCNGG	2 cut(s)	345, 480
Bme18I	GGWCC	2 cut(s)	469, 659
BmgT120I	GGNCC	2 cut(s)	469, 659
BmiI	GGNNCC	2 cut(s)	6, 484
BmrFI	CCNGG	2 cut(s)	345, 480
BmtI	GCTAGC	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	2 cut(s)	111, 132
BpuMI	CCSGG	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	307, 511
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 277
Bse1I	ACTGG	3 cut(s)	380, 433, 570
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	307, 511
BseLI	CCNNNNNNNGG	2 cut(s)	186, 277
BseMII	CTCAG	3 cut(s)	102, 123, 304
BseNI	ACTGG	3 cut(s)	380, 433, 570
BseRI	GAGGAG	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	188, 282
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	241
BshNI	GGYRCC	1 cut(s)	482
BsiSI	CCGG	2 cut(s)	333, 344
BslI	CCNNNNNNNGG	2 cut(s)	186, 277
BsnI	GGCC	1 cut(s)	241
Bsp143I	GATC	2 cut(s)	118, 595
Bsp19I	CCATGG	1 cut(s)	511
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	3 cut(s)	103, 124, 303
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	2 cut(s)	6, 484
BspOI	GCTAGC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	482
BsrI	ACTGG	3 cut(s)	380, 433, 570
BssECI	CCNNGG	2 cut(s)	307, 511
BssMI	GATC	2 cut(s)	118, 595
BssT1I	CCWWGG	2 cut(s)	307, 511
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	5 cut(s)	12, 74, 200, 270, 537
BstC8I	GCNNGC	2 cut(s)	129, 215
BstDEI	CTNAG	6 cut(s)	111, 132, 218, 236, 290, 616
BstDSI	CCRYGG	1 cut(s)	511
BstKTI	GATC	2 cut(s)	121, 598
BstMBI	GATC	2 cut(s)	118, 595
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 182, 223
BstNI	CCWGG	1 cut(s)	480
BstSCI	CCNGG	2 cut(s)	343, 478
BstV1I	GCAGC	2 cut(s)	188, 282
BstXI	CCANNNNNNTGG	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	511
BtsIMutI	CAGTG	2 cut(s)	471, 577
Cac8I	GCNNGC	2 cut(s)	129, 215
CciI	TCATGA	1 cut(s)	598
Cfr13I	GGNCC	2 cut(s)	469, 659
CsiI	ACCWGGT	1 cut(s)	478
Csp6I	GTAC	2 cut(s)	483, 549
CviAII	CATG	3 cut(s)	149, 512, 599
CviQI	GTAC	2 cut(s)	483, 549
DdeI	CTNAG	6 cut(s)	111, 132, 218, 236, 290, 616
DpnI	GATC	2 cut(s)	120, 597
DpnII	GATC	2 cut(s)	118, 595
Eam1104I	CTCTTC	5 cut(s)	12, 74, 200, 270, 537
EarI	CTCTTC	5 cut(s)	12, 74, 200, 270, 537
Eco130I	CCWWGG	2 cut(s)	307, 511
Eco47I	GGWCC	2 cut(s)	469, 659
EcoO109I	RGGNCCY	1 cut(s)	659
EcoRII	CCWGG	1 cut(s)	478
EcoT14I	CCWWGG	2 cut(s)	307, 511
ErhI	CCWWGG	2 cut(s)	307, 511
FaeI	CATG	3 cut(s)	152, 515, 602
FaiI	YATR	5 cut(s)	68, 150, 263, 513, 600
FatI	CATG	3 cut(s)	148, 511, 598
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	2 cut(s)	177, 296
Fsp4HI	GCNGC	2 cut(s)	177, 296
FspBI	CTAG	2 cut(s)	128, 697
GluI	GCNGC	2 cut(s)	177, 296
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	2 cut(s)	333, 344
Hin1II	CATG	3 cut(s)	152, 515, 602
HincII	GTYRAC	2 cut(s)	91, 682
HindII	GTYRAC	2 cut(s)	91, 682
HinfI	GANTC	5 cut(s)	20, 193, 286, 443, 530
HpaII	CCGG	2 cut(s)	333, 344
HphI	GGTGA	2 cut(s)	506, 602
Hpy166II	GTNNAC	3 cut(s)	91, 469, 682
Hpy188I	TCNGA	3 cut(s)	123, 268, 541
Hpy188III	TCNNGA	2 cut(s)	250, 599
Hpy8I	GTNNAC	3 cut(s)	91, 469, 682
HpyAV	CCTTC	1 cut(s)	650
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	4 cut(s)	143, 176, 213, 298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 182, 223
HpyF3I	CTNAG	6 cut(s)	111, 132, 218, 236, 290, 616
Hsp92II	CATG	3 cut(s)	152, 515, 602
KpnI	GGTACC	1 cut(s)	486
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	2 cut(s)	118, 595
LmnI	GCTCC	2 cut(s)	10, 98
Lsp1109I	GCAGC	2 cut(s)	188, 282
MabI	ACCWGGT	1 cut(s)	478
MaeI	CTAG	2 cut(s)	128, 697
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	120, 597
MboI	GATC	2 cut(s)	118, 595
MboII	GAAGA	8 cut(s)	29, 55, 91, 128, 217, 287, 348, 554
MfeI	CAATTG	1 cut(s)	171
MluCI	AATT	3 cut(s)	144, 171, 667
MlyI	GAGTC	2 cut(s)	29, 524
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	9 cut(s)	75, 79, 106, 127, 248, 271, 425, 538, 581
MslI	CAYNNNNRTG	1 cut(s)	492
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	2 cut(s)	333, 344
MspR9I	CCNGG	2 cut(s)	345, 480
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	480
MwoI	GCNNNNNNNGC	3 cut(s)	107, 182, 223
NciI	CCSGG	1 cut(s)	345
NcoI	CCATGG	1 cut(s)	511
NdeII	GATC	2 cut(s)	118, 595
NheI	GCTAGC	1 cut(s)	127
NlaIII	CATG	3 cut(s)	152, 515, 602
NlaIV	GGNNCC	2 cut(s)	6, 484
PagI	TCATGA	1 cut(s)	598
PfeI	GAWTC	3 cut(s)	193, 286, 443
PkrI	GCNGC	2 cut(s)	178, 297
PleI	GAGTC	2 cut(s)	28, 524
PpsI	GAGTC	2 cut(s)	28, 524
PpuMI	RGGWCCY	1 cut(s)	659
Psp5II	RGGWCCY	1 cut(s)	659
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	2 cut(s)	6, 484
PspPI	GGNCC	2 cut(s)	469, 659
PspPPI	RGGWCCY	1 cut(s)	659
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	2 cut(s)	484, 550
RsaNI	GTAC	2 cut(s)	483, 549
RseI	CAYNNNNRTG	1 cut(s)	492
SatI	GCNGC	2 cut(s)	177, 296
Sau3AI	GATC	2 cut(s)	118, 595
Sau96I	GGNCC	2 cut(s)	469, 659
SchI	GAGTC	2 cut(s)	29, 524
ScrFI	CCNGG	2 cut(s)	345, 480
SexAI	ACCWGGT	1 cut(s)	478
SinI	GGWCC	2 cut(s)	469, 659
SmiMI	CAYNNNNRTG	1 cut(s)	492
Sse9I	AATT	3 cut(s)	144, 171, 667
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	2 cut(s)	128, 697
StyD4I	CCNGG	2 cut(s)	343, 478
StyI	CCWWGG	2 cut(s)	307, 511
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	1 cut(s)	349
TasI	AATT	3 cut(s)	144, 171, 667
TfiI	GAWTC	3 cut(s)	193, 286, 443
TscAI	CASTG	2 cut(s)	471, 577
TseI	GCWGC	2 cut(s)	176, 295
TspDTI	ATGAA	7 cut(s)	56, 62, 83, 137, 536, 615, 669
TspRI	CASTG	2 cut(s)	471, 577
VpaK11BI	GGWCC	2 cut(s)	469, 659
XspI	CTAG	2 cut(s)	128, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.