Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0016371

Physical Location & Seq

Genomic Coordinates Forward (+)

19513779 .. 19515142

Gene Structure 1364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1092300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTCCTGTGACAAAAGAGTCCGTCAATAGAAGAAAAATGAAGGGAGGGGAAGCCATGAAAAACACAAAAAGGAAAGTCAACAAGGGAGCATGGACAACCGAAGAAGATCAGAAACTGGCTGAAGCTATTGAAACACATGGTGCAAAAAGGTGGAAGACAATTGCATCTAAAGCAGGCCTCAATAGGTGTGGCAAGAGTTGCAGGCTAAGATGGTTGAACTATCTCAGACCAAACATCAAGAGAGGCAACATATCTGACCAAGAAGAGGACTTGATCGTTAGACTTCACAAACTTCTTGGAAATAGGTGGTCTTTAATTGCCGGACGATTGCCTGGTCGAACAGATAATGAAATAAAAAACTACTGGAATTCTCATTTGAGCAAAAGAATGAGCCAAAAGGAAAAGGAAAATGGAGCCAATTTAACAAGAAAAATGATCTCCACAGATCATCAGAAGGATCATGTACAGATGAAAGAAGATGCGTCATTGCAAGAGGCTGCTACTAGTACTAGTACTACTAGTGCTGCATCTAGTGCTGCATCTAAAGGAGGTGATCAAAACTCCAACATTAATATTGATGTAGATGATTTCTTTGATTTCTCCAATGAGGGTTCTTTGAATTTGGAATGGGTGAGCAAGTTTCTTGAACAAGATTATGGCAGATGGCTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

226

Amino Acids

25.55

Weight (kDa)

9.6

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	29 - 76	6e-20	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	32 - 90	4.4e-15	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	82 - 127	1.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	86 - 134	5.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016371)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34670
malus_domestica	MD00G1092300.v1.1 MD09G1183800.v1.1
prunus_persica	Prupe.3G042100_v2.0.a1
pyrus_communis	pycom09g10130
rosa_chinensis	RchiOBHm_Chr2g0145221
rosa_laevigata	RLG00000020133
rosa_multiflora	Rmu_sc0001298.1_g000013
rosa_roxburghii	Rroxscaffold_2G00100780
rosa_rugosa	Rorug02G0391500
rosa_samantha	Rh2AG444200 Rh2BG455100 Rh2CG431100 Rh2DG465100
rosa_wichuraiana	Rw2G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	19
AclWI	GGATC	1 cut(s)	468
AcsI	RAATTY	2 cut(s)	370, 622
AcuI	CTGAAG	1 cut(s)	144
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	3 cut(s)	468, 511, 517
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	4 cut(s)	134, 220, 622, 650
AhlI	ACTAGT	3 cut(s)	506, 512, 521
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
AlwI	GGATC	1 cut(s)	468
AlwNI	CAGNNNCTG	1 cut(s)	118
AoxI	GGCC	1 cut(s)	178
ApeKI	GCWGC	3 cut(s)	500, 527, 539
ApoI	RAATTY	2 cut(s)	370, 622
AseI	ATTAAT	1 cut(s)	573
AsuHPI	GGTGA	2 cut(s)	566, 646
BbsI	GAAGAC	1 cut(s)	164
BbvI	GCAGC	3 cut(s)	487, 514, 526
BccI	CCATC	2 cut(s)	207, 660
BciT130I	CCWGG	1 cut(s)	336
BclI	TGATCA	1 cut(s)	556
BcuI	ACTAGT	3 cut(s)	506, 512, 521
BfaI	CTAG	4 cut(s)	507, 513, 522, 534
BisI	GCNGC	3 cut(s)	501, 528, 540
BlsI	GCNGC	3 cut(s)	502, 529, 541
BmcAI	AGTACT	2 cut(s)	511, 517
Bme1390I	CCNGG	1 cut(s)	336
BmiI	GGNNCC	2 cut(s)	6, 418
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	4 cut(s)	176, 472, 539, 551
BpiI	GAAGAC	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse1I	ACTGG	2 cut(s)	123, 371
Bse3DI	GCAATG	1 cut(s)	488
BseBI	CCWGG	1 cut(s)	336
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMI	GCAATG	1 cut(s)	488
BseMII	CTCAG	1 cut(s)	241
BseNI	ACTGG	2 cut(s)	123, 371
BseXI	GCAGC	3 cut(s)	487, 514, 526
BshFI	GGCC	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	268
BsnI	GGCC	1 cut(s)	180
Bsp1407I	TGTACA	1 cut(s)	466
Bsp143I	GATC	6 cut(s)	109, 276, 438, 448, 460, 556
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	6, 418
BspPI	GGATC	1 cut(s)	468
BsrDI	GCAATG	1 cut(s)	488
BsrGI	TGTACA	1 cut(s)	466
BsrI	ACTGG	2 cut(s)	123, 371
BssMI	GATC	6 cut(s)	109, 276, 438, 448, 460, 556
Bst2UI	CCWGG	1 cut(s)	336
Bst6I	CTCTTC	1 cut(s)	261
BstAPI	GCANNNNNTGC	2 cut(s)	201, 536
BstAUI	TGTACA	1 cut(s)	466
BstC8I	GCNNGC	2 cut(s)	178, 206
BstDEI	CTNAG	2 cut(s)	209, 227
BstKTI	GATC	6 cut(s)	112, 279, 441, 451, 463, 559
BstMBI	GATC	6 cut(s)	109, 276, 438, 448, 460, 556
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 201, 536
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	1 cut(s)	334
BstV1I	GCAGC	3 cut(s)	487, 514, 526
BstV2I	GAAGAC	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	178, 206
CaiI	CAGNNNCTG	1 cut(s)	118
CseI	GACGC	1 cut(s)	474
Csp6I	GTAC	3 cut(s)	467, 510, 516
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviAII	CATG	4 cut(s)	58, 93, 140, 464
CviQI	GTAC	3 cut(s)	467, 510, 516
DdeI	CTNAG	2 cut(s)	209, 227
DpnI	GATC	6 cut(s)	111, 278, 440, 450, 462, 558
DpnII	GATC	6 cut(s)	109, 276, 438, 448, 460, 556
DraIII	CACNNNGTG	1 cut(s)	143
DrdI	GACNNNNNNGTC	1 cut(s)	19
DseDI	GACNNNNNNGTC	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	144
EcoRI	GAATTC	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	334
FaeI	CATG	4 cut(s)	61, 96, 143, 467
FaiI	YATR	6 cut(s)	59, 94, 141, 254, 465, 660
FatI	CATG	4 cut(s)	57, 92, 139, 463
FbaI	TGATCA	1 cut(s)	556
Fnu4HI	GCNGC	3 cut(s)	501, 528, 540
Fsp4HI	GCNGC	3 cut(s)	501, 528, 540
FspBI	CTAG	4 cut(s)	507, 513, 522, 534
GluI	GCNGC	3 cut(s)	501, 528, 540
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	1 cut(s)	324
HgaI	GACGC	1 cut(s)	474
Hin1II	CATG	4 cut(s)	61, 96, 143, 467
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	2 cut(s)	566, 646
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	4 cut(s)	114, 230, 259, 456
Hpy188III	TCNNGA	2 cut(s)	241, 647
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	37, 451
HpyCH4V	TGCA	6 cut(s)	146, 167, 204, 493, 530, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 201, 536
HpyF3I	CTNAG	2 cut(s)	209, 227
Hsp92II	CATG	4 cut(s)	61, 96, 143, 467
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	6 cut(s)	109, 276, 438, 448, 460, 556
LmnI	GCTCC	3 cut(s)	10, 89, 416
LpnPI	CCDG	8 cut(s)	21, 104, 162, 190, 321, 337, 348, 352
Lsp1109I	GCAGC	3 cut(s)	487, 514, 526
LweI	GCATC	4 cut(s)	176, 472, 539, 551
MaeI	CTAG	4 cut(s)	507, 513, 522, 534
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	6 cut(s)	111, 278, 440, 450, 462, 558
MboI	GATC	6 cut(s)	109, 276, 438, 448, 460, 556
MboII	GAAGA	6 cut(s)	45, 116, 119, 169, 278, 491
MfeI	CAATTG	1 cut(s)	162
MluCI	AATT	5 cut(s)	162, 318, 370, 421, 622
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	591
MnlI	CCTC	7 cut(s)	41, 191, 239, 262, 490, 545, 604
MseI	TTAA	4 cut(s)	317, 425, 573, 672
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	336
MunI	CAATTG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	3 cut(s)	173, 201, 536
NdeII	GATC	6 cut(s)	109, 276, 438, 448, 460, 556
NlaIII	CATG	4 cut(s)	61, 96, 143, 467
NlaIV	GGNNCC	2 cut(s)	6, 418
NmuCI	GTSAC	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	180
PkrI	GCNGC	3 cut(s)	502, 529, 541
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PshBI	ATTAAT	1 cut(s)	573
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	6, 418
PstNI	CAGNNNCTG	1 cut(s)	118
RsaI	GTAC	3 cut(s)	468, 511, 517
RsaNI	GTAC	3 cut(s)	467, 510, 516
SaqAI	TTAA	4 cut(s)	317, 425, 573, 672
SatI	GCNGC	3 cut(s)	501, 528, 540
Sau3AI	GATC	6 cut(s)	109, 276, 438, 448, 460, 556
ScaI	AGTACT	2 cut(s)	511, 517
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	5 cut(s)	130, 155, 191, 311, 556
SfaNI	GCATC	4 cut(s)	176, 472, 539, 551
SpeI	ACTAGT	3 cut(s)	506, 512, 521
Sse9I	AATT	5 cut(s)	162, 318, 370, 421, 622
SseBI	AGGCCT	1 cut(s)	180
SspI	AATATT	1 cut(s)	577
SspMI	CTAG	4 cut(s)	507, 513, 522, 534
StuI	AGGCCT	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	334
TaqI	TCGA	1 cut(s)	340
TasI	AATT	5 cut(s)	162, 318, 370, 421, 622
TatI	WGTACW	3 cut(s)	466, 509, 515
Tru1I	TTAA	4 cut(s)	317, 425, 573, 672
Tru9I	TTAA	4 cut(s)	317, 425, 573, 672
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	3 cut(s)	500, 527, 539
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	4 cut(s)	56, 74, 366, 488
TspGWI	ACGGA	1 cut(s)	13
VspI	ATTAAT	1 cut(s)	573
XapI	RAATTY	2 cut(s)	370, 622
XspI	CTAG	4 cut(s)	507, 513, 522, 534
ZrmI	AGTACT	2 cut(s)	511, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.