Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016371

Physical Location & Seq

Genomic Coordinates Forward (+)

2999700 .. 3001163

Gene Structure 1464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G042100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCTCCTATGACAGAAGAGTCCATTAAAAGAAAAGTGAAGGCAGGGGAAGCCATGAAGGGCTCAAAAAGGGAAGTCAACAAGGGAGCATGGACAGCAGAGGAAGATCACAAACTAGCAGAGGTTATTGAAGTACATGGTGCAAAAAGATGGAAGACAATTGCCTCCAAAGCAGGCCTCAATCGGTGCGGCAAGAGTTGCAGGCTAAGATGGTTGAACTATCTAAGACCCAACATCAAGAGAGGAAATATATCTGACCAAGAAGAGGACTTGATCGTTAGGCTACACAAACTTCTCGGAAACAGGTGGTCTTTGATTGCTGGAAGATTGCCTGGTCGAACAGATAATGAAATAAAAAACTACTGGAACTCTCATTTGAGCAAGAGAATAATCCAGAAGGAGAAGCAAAGTGGAGCCAACCCAACAAGACAAATGGTCTCCACAGACCAGAAACTAAGCCTAGCAGAACATCACCAGAAGGTCCACATAGAAATGAAAGAAGACTCGTTATCAGAAGAAGGTGCTAGCTTTGCATCCAAAGACTCGAGCAAGAACATGAACAATATTGATGTTGATGACTTCTTTGATTTCTCCAACGAGGGACCTTTGAATTTGGAGTGGGTGAGTAAATTCCTGGACTTCGATGATGACAGATGGCTTATTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

223

Amino Acids

25.55

Weight (kDa)

8.95

Isoelectric Point (pI)

57.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016371)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34670
malus_domestica	MD00G1092300.v1.1 MD09G1183800.v1.1
prunus_persica	Prupe.3G042100_v2.0.a1
pyrus_communis	pycom09g10130
rosa_chinensis	RchiOBHm_Chr2g0145221
rosa_laevigata	RLG00000020133
rosa_multiflora	Rmu_sc0001298.1_g000013
rosa_roxburghii	Rroxscaffold_2G00100780
rosa_rugosa	Rorug02G0391500
rosa_samantha	Rh2AG444200 Rh2BG455100 Rh2CG431100 Rh2DG465100
rosa_wichuraiana	Rw2G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	19
AciI	CCGC	1 cut(s)	189
AcsI	RAATTY	2 cut(s)	610, 629
AfaI	GTAC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	3 cut(s)	131, 217, 610
AhdI	GACNNNNNGTC	1 cut(s)	434
AjnI	CCWGG	2 cut(s)	331, 633
AluBI	AGCT	1 cut(s)	528
AluI	AGCT	1 cut(s)	528
Alw26I	GTCTC	1 cut(s)	442
Ama87I	CYCGRG	1 cut(s)	544
AoxI	GGCC	1 cut(s)	175
ApoI	RAATTY	2 cut(s)	610, 629
AspS9I	GGNCC	2 cut(s)	481, 602
AsuHPI	GGTGA	2 cut(s)	464, 634
AsuNHI	GCTAGC	1 cut(s)	524
AvaI	CYCGRG	1 cut(s)	544
AvaII	GGWCC	2 cut(s)	481, 602
BanII	GRGCYC	1 cut(s)	65
BbsI	GAAGAC	2 cut(s)	161, 507
BccI	CCATC	3 cut(s)	144, 204, 648
BciT130I	CCWGG	2 cut(s)	333, 635
BcoDI	GTCTC	1 cut(s)	442
BfaI	CTAG	3 cut(s)	116, 461, 525
BisI	GCNGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	191
Bme1390I	CCNGG	2 cut(s)	333, 635
Bme18I	GGWCC	2 cut(s)	481, 602
BmeRI	GACNNNNNGTC	1 cut(s)	434
BmeT110I	CYCGRG	1 cut(s)	544
BmgT120I	GGNCC	2 cut(s)	481, 602
BmiI	GGNNCC	3 cut(s)	6, 415, 603
BmrFI	CCNGG	2 cut(s)	333, 635
BmsI	GCATC	1 cut(s)	542
BmtI	GCTAGC	1 cut(s)	528
BpiI	GAAGAC	2 cut(s)	161, 507
BsaI	GGTCTC	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	368
BseBI	CCWGG	2 cut(s)	333, 635
BseGI	GGATG	1 cut(s)	533
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseNI	ACTGG	1 cut(s)	368
BshFI	GGCC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	544
BslFI	GGGAC	1 cut(s)	615
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	442
BsmFI	GGGAC	1 cut(s)	615
BsnI	GGCC	1 cut(s)	177
Bso31I	GGTCTC	1 cut(s)	442
BsoBI	CYCGRG	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	106, 273
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	177
BspLI	GGNNCC	3 cut(s)	6, 415, 603
BspOI	GCTAGC	1 cut(s)	528
BspTNI	GGTCTC	1 cut(s)	442
BsrI	ACTGG	1 cut(s)	368
BssMI	GATC	2 cut(s)	106, 273
Bst2UI	CCWGG	2 cut(s)	333, 635
Bst6I	CTCTTC	2 cut(s)	12, 258
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstC8I	GCNNGC	3 cut(s)	175, 203, 526
BstDEI	CTNAG	3 cut(s)	206, 224, 455
BstF5I	GGATG	1 cut(s)	533
BstKTI	GATC	2 cut(s)	109, 276
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	2 cut(s)	106, 273
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 95, 170, 198, 530
BstNI	CCWGG	2 cut(s)	333, 635
BstSCI	CCNGG	2 cut(s)	331, 633
BstV2I	GAAGAC	2 cut(s)	161, 507
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	533
Cac8I	GCNNGC	3 cut(s)	175, 203, 526
Cfr13I	GGNCC	2 cut(s)	481, 602
Csp6I	GTAC	1 cut(s)	134
CviAII	CATG	4 cut(s)	55, 90, 137, 556
CviQI	GTAC	1 cut(s)	134
DdeI	CTNAG	3 cut(s)	206, 224, 455
DpnI	GATC	2 cut(s)	108, 275
DpnII	GATC	2 cut(s)	106, 273
DrdI	GACNNNNNNGTC	1 cut(s)	19
DriI	GACNNNNNGTC	1 cut(s)	434
DseDI	GACNNNNNNGTC	1 cut(s)	19
Eam1104I	CTCTTC	2 cut(s)	12, 258
Eam1105I	GACNNNNNGTC	1 cut(s)	434
EarI	CTCTTC	2 cut(s)	12, 258
Eco147I	AGGCCT	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	442
Eco47I	GGWCC	2 cut(s)	481, 602
Eco88I	CYCGRG	1 cut(s)	544
EcoO109I	RGGNCCY	1 cut(s)	602
EcoRII	CCWGG	2 cut(s)	331, 633
EcoT38I	GRGCYC	1 cut(s)	65
FaeI	CATG	4 cut(s)	58, 93, 140, 559
FaiI	YATR	7 cut(s)	11, 56, 91, 138, 251, 488, 557
FaqI	GGGAC	1 cut(s)	615
FatI	CATG	4 cut(s)	54, 89, 136, 555
Fnu4HI	GCNGC	1 cut(s)	190
FokI	GGATG	1 cut(s)	520
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	190
FspBI	CTAG	3 cut(s)	116, 461, 525
GluI	GCNGC	1 cut(s)	190
HaeIII	GGCC	1 cut(s)	177
Hin1II	CATG	4 cut(s)	58, 93, 140, 559
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	3 cut(s)	20, 503, 542
HphI	GGTGA	2 cut(s)	464, 634
Hpy166II	GTNNAC	2 cut(s)	79, 484
Hpy188I	TCNGA	3 cut(s)	256, 299, 514
Hpy188III	TCNNGA	2 cut(s)	238, 394
Hpy8I	GTNNAC	2 cut(s)	79, 484
HpyAV	CCTTC	5 cut(s)	34, 52, 391, 472, 512
HpyCH4V	TGCA	3 cut(s)	143, 201, 533
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 95, 170, 198, 530
HpyF3I	CTNAG	3 cut(s)	206, 224, 455
Hsp92II	CATG	4 cut(s)	58, 93, 140, 559
Kzo9I	GATC	2 cut(s)	106, 273
LmnI	GCTCC	3 cut(s)	10, 86, 413
LweI	GCATC	1 cut(s)	542
MaeI	CTAG	3 cut(s)	116, 461, 525
MalI	GATC	2 cut(s)	108, 275
MboI	GATC	2 cut(s)	106, 273
MboII	GAAGA	7 cut(s)	29, 116, 166, 275, 336, 512, 527
MfeI	CAATTG	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	3 cut(s)	159, 610, 629
MlyI	GAGTC	3 cut(s)	29, 497, 536
MmeI	TCCRAC	1 cut(s)	618
MnlI	CCTC	7 cut(s)	94, 115, 175, 188, 236, 259, 592
MseI	TTAA	2 cut(s)	27, 663
MslI	CAYNNNNRTG	1 cut(s)	491
MspR9I	CCNGG	2 cut(s)	333, 635
MunI	CAATTG	1 cut(s)	159
MvaI	CCWGG	2 cut(s)	333, 635
MwoI	GCNNNNNNNGC	5 cut(s)	50, 95, 170, 198, 530
NdeII	GATC	2 cut(s)	106, 273
NheI	GCTAGC	1 cut(s)	524
NlaIII	CATG	4 cut(s)	58, 93, 140, 559
NlaIV	GGNNCC	3 cut(s)	6, 415, 603
PaeR7I	CTCGAG	1 cut(s)	544
PceI	AGGCCT	1 cut(s)	177
PfoI	TCCNGGA	1 cut(s)	633
PkrI	GCNGC	1 cut(s)	191
PleI	GAGTC	3 cut(s)	28, 497, 536
PpsI	GAGTC	3 cut(s)	28, 497, 536
PpuMI	RGGWCCY	1 cut(s)	602
Psp5II	RGGWCCY	1 cut(s)	602
Psp6I	CCWGG	2 cut(s)	331, 633
PspGI	CCWGG	2 cut(s)	331, 633
PspN4I	GGNNCC	3 cut(s)	6, 415, 603
PspPI	GGNCC	2 cut(s)	481, 602
PspPPI	RGGWCCY	1 cut(s)	602
PspXI	VCTCGAGB	1 cut(s)	544
RsaI	GTAC	1 cut(s)	135
RsaNI	GTAC	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	2 cut(s)	27, 663
SatI	GCNGC	1 cut(s)	190
Sau3AI	GATC	2 cut(s)	106, 273
Sau96I	GGNCC	2 cut(s)	481, 602
SchI	GAGTC	3 cut(s)	29, 497, 536
ScrFI	CCNGG	2 cut(s)	333, 635
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	6 cut(s)	126, 308, 483, 523, 530, 607
SfaNI	GCATC	1 cut(s)	542
Sfr274I	CTCGAG	1 cut(s)	544
SinI	GGWCC	2 cut(s)	481, 602
SlaI	CTCGAG	1 cut(s)	544
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
Sse9I	AATT	3 cut(s)	159, 610, 629
SseBI	AGGCCT	1 cut(s)	177
SsiI	CCGC	1 cut(s)	189
SspI	AATATT	1 cut(s)	565
SspMI	CTAG	3 cut(s)	116, 461, 525
StuI	AGGCCT	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	331, 633
TaqI	TCGA	3 cut(s)	337, 545, 642
TasI	AATT	3 cut(s)	159, 610, 629
TatI	WGTACW	1 cut(s)	133
TauI	GCSGC	1 cut(s)	192
Tru1I	TTAA	2 cut(s)	27, 663
Tru9I	TTAA	2 cut(s)	27, 663
TspDTI	ATGAA	4 cut(s)	71, 363, 509, 572
VpaK11BI	GGWCC	2 cut(s)	481, 602
XapI	RAATTY	2 cut(s)	610, 629
XhoI	CTCGAG	1 cut(s)	544
XspI	CTAG	3 cut(s)	116, 461, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.