Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0016371

Physical Location & Seq

Genomic Coordinates Forward (+)

8271497 .. 8272326

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g10130.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCTCCCGTGACAAAAGACTCCATTAATAGACGAAAAGTGAAGGGAGGTGAAGCCATGAAAAACACAAAAAGGGAAGTCAACAAGGGAGCATGGACAGCAGAAGAAGATCAGAAACTGGCTGAGGTTATTGAAATACATGGTGCAAAAAGGTGGAAGACAATTGCATCTAAAGCAGGCCTCAATAGGTGTGGTAAAAGTTGCAGGCTAAGATGGTTGAACTATCTCAGACCAAACATCAAGAGAGGCAACATATCTGAGCAAGAAGAGGAATTGATCGTTAGGCTTCACAAACTTCTTGGAAATAGGTGGTCTTTGATTGCCGGGCGATTGCCGGGTCGAACAGATAATGAAATAAAAAACTACTGGAATTCTCATTTGAGCAAGAGAATGAACCAGAAGGAAAAGCAAAATGGAGCCAATTTAACAAGACAAATGATCGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

150

Amino Acids

17.23

Weight (kDa)

10.31

Isoelectric Point (pI)

64.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016371)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34670
malus_domestica	MD00G1092300.v1.1 MD09G1183800.v1.1
prunus_persica	Prupe.3G042100_v2.0.a1
pyrus_communis	pycom09g10130
rosa_chinensis	RchiOBHm_Chr2g0145221
rosa_laevigata	RLG00000020133
rosa_multiflora	Rmu_sc0001298.1_g000013
rosa_roxburghii	Rroxscaffold_2G00100780
rosa_rugosa	Rorug02G0391500
rosa_samantha	Rh2AG444200 Rh2BG455100 Rh2CG431100 Rh2DG465100
rosa_wichuraiana	Rw2G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	437
AcsI	RAATTY	1 cut(s)	370
AgsI	TTSAA	2 cut(s)	134, 220
AlwI	GGATC	1 cut(s)	437
AlwNI	CAGNNNCTG	1 cut(s)	118
AoxI	GGCC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	370
AseI	ATTAAT	1 cut(s)	27
AsuC2I	CCSGG	2 cut(s)	325, 336
AsuHPI	GGTGA	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	164
BbvCI	CCTCAGC	1 cut(s)	123
BccI	CCATC	1 cut(s)	207
BcnI	CCSGG	2 cut(s)	325, 336
Bme1390I	CCNGG	2 cut(s)	325, 336
BmiI	GGNNCC	2 cut(s)	6, 418
BmrFI	CCNGG	2 cut(s)	325, 336
BmsI	GCATC	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	123
BpuMI	CCSGG	2 cut(s)	325, 336
Bsa29I	ATCGAT	1 cut(s)	441
Bse1I	ACTGG	2 cut(s)	123, 371
BseCI	ATCGAT	1 cut(s)	441
BseMII	CTCAG	3 cut(s)	114, 241, 249
BseNI	ACTGG	2 cut(s)	123, 371
BshFI	GGCC	1 cut(s)	180
BshVI	ATCGAT	1 cut(s)	441
BsiSI	CCGG	2 cut(s)	324, 335
BsnI	GGCC	1 cut(s)	180
Bsp143I	GATC	4 cut(s)	109, 276, 438, 442
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	3 cut(s)	115, 240, 250
BspDI	ATCGAT	1 cut(s)	441
BspLI	GGNNCC	2 cut(s)	6, 418
BspPI	GGATC	1 cut(s)	437
BsrI	ACTGG	2 cut(s)	123, 371
BssMI	GATC	4 cut(s)	109, 276, 438, 442
Bst6I	CTCTTC	1 cut(s)	261
BstC8I	GCNNGC	2 cut(s)	178, 206
BstDEI	CTNAG	4 cut(s)	123, 209, 227, 258
BstKTI	GATC	4 cut(s)	112, 279, 441, 445
BstMBI	GATC	4 cut(s)	109, 276, 438, 442
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 173
BstSCI	CCNGG	2 cut(s)	323, 334
BstV2I	GAAGAC	1 cut(s)	164
Bsu15I	ATCGAT	1 cut(s)	441
BsuRI	GGCC	1 cut(s)	180
BsuTUI	ATCGAT	1 cut(s)	441
Cac8I	GCNNGC	2 cut(s)	178, 206
CaiI	CAGNNNCTG	1 cut(s)	118
ClaI	ATCGAT	1 cut(s)	441
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviAII	CATG	3 cut(s)	58, 93, 140
CviJI	RGCY	7 cut(s)	5, 56, 122, 180, 208, 286, 419
CviKI_1	RGCY	7 cut(s)	5, 56, 122, 180, 208, 286, 419
DdeI	CTNAG	4 cut(s)	123, 209, 227, 258
DpnI	GATC	4 cut(s)	111, 278, 440, 444
DpnII	GATC	4 cut(s)	109, 276, 438, 442
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	370
FaeI	CATG	3 cut(s)	61, 96, 143
FaiI	YATR	5 cut(s)	59, 94, 141, 254, 448
FatI	CATG	3 cut(s)	57, 92, 139
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	2 cut(s)	324, 335
Hin1II	CATG	3 cut(s)	61, 96, 143
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	2 cut(s)	324, 335
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	3 cut(s)	114, 230, 259
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	37, 394
HpyCH4V	TGCA	3 cut(s)	146, 167, 204
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 173
HpyF3I	CTNAG	4 cut(s)	123, 209, 227, 258
Hsp92II	CATG	3 cut(s)	61, 96, 143
Kzo9I	GATC	4 cut(s)	109, 276, 438, 442
LmnI	GCTCC	3 cut(s)	10, 89, 416
LpnPI	CCDG	7 cut(s)	104, 162, 190, 337, 348, 352, 410
LweI	GCATC	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	4 cut(s)	111, 278, 440, 444
MboI	GATC	4 cut(s)	109, 276, 438, 442
MboII	GAAGA	4 cut(s)	116, 119, 169, 278
MfeI	CAATTG	1 cut(s)	162
MluCI	AATT	4 cut(s)	162, 272, 370, 421
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	5 cut(s)	41, 118, 191, 239, 262
MseI	TTAA	2 cut(s)	27, 425
MspI	CCGG	2 cut(s)	324, 335
MspR9I	CCNGG	2 cut(s)	325, 336
MunI	CAATTG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	98, 173
NciI	CCSGG	2 cut(s)	325, 336
NdeII	GATC	4 cut(s)	109, 276, 438, 442
NlaIII	CATG	3 cut(s)	61, 96, 143
NlaIV	GGNNCC	2 cut(s)	6, 418
NmuCI	GTSAC	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	180
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PshBI	ATTAAT	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	6, 418
PstNI	CAGNNNCTG	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	27, 425
Sau3AI	GATC	4 cut(s)	109, 276, 438, 442
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	325, 336
SetI	ASST	5 cut(s)	52, 129, 155, 191, 311
SfaNI	GCATC	1 cut(s)	176
Sse9I	AATT	4 cut(s)	162, 272, 370, 421
SseBI	AGGCCT	1 cut(s)	180
StuI	AGGCCT	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	323, 334
TaqI	TCGA	2 cut(s)	340, 441
TasI	AATT	4 cut(s)	162, 272, 370, 421
Tru1I	TTAA	2 cut(s)	27, 425
Tru9I	TTAA	2 cut(s)	27, 425
TseFI	GTSAC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	3 cut(s)	74, 366, 407
VspI	ATTAAT	1 cut(s)	27
XapI	RAATTY	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.