Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001298.1

Orthogroup ID

OG0016371

Physical Location & Seq

Genomic Coordinates Reverse (-)

31084 .. 32070

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001298.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atggctccaaagaaagaagagtccgctaaacgagaagtgatgaagatgaagtcgttggaagctgttatgaaaaacacgaaaagggaggtcaacaagggagcttggacagctgaggaagatcagaagctagctgaggttactgcaattcatggtgctaaaaagtggaagtcaattgcagccaaagcagggctgaatcggtgtggtaagagttgcaggctaagatggctgaactatctaagaccaaacatcaagagaggcaacatatctgaccaagaagaggacttgattctcaggctgcacaaactccttggaaataggtggtctttgattgccggaagattgccgggtcgaacagacaatgagataaagaactactggaactctcatttgagcaagagaataaaccagaaagagaaacaaagaaatactggaggagatgatgattcaacaagacaaatctccacagtggaccagaaacctggtacccatttaggtgagcagaataaaatccatggagaaatgaaacaagactcatcatcagaagagggtactactactactaccaccaccagtgcttctaataaaggaggtgatgatcatgaaaactactcaaacttagacattgatattgatgacttctttgatttctccaatgaagggcctttcaatttggaatgggtcaacaagttcctttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

232

Amino Acids

26.45

Weight (kDa)

8.9

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016371)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34670
malus_domestica	MD00G1092300.v1.1 MD09G1183800.v1.1
prunus_persica	Prupe.3G042100_v2.0.a1
pyrus_communis	pycom09g10130
rosa_chinensis	RchiOBHm_Chr2g0145221
rosa_laevigata	RLG00000020133
rosa_multiflora	Rmu_sc0001298.1_g000013
rosa_roxburghii	Rroxscaffold_2G00100780
rosa_rugosa	Rorug02G0391500
rosa_samantha	Rh2AG444200 Rh2BG455100 Rh2CG431100 Rh2DG465100
rosa_wichuraiana	Rw2G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	482
AccB1I	GGYRCC	1 cut(s)	482
AciI	CCGC	1 cut(s)	24
AfaI	GTAC	2 cut(s)	484, 550
AfiI	CCNNNNNNNGG	3 cut(s)	186, 277, 657
AgsI	TTSAA	2 cut(s)	447, 667
AjnI	CCWGG	1 cut(s)	478
AluBI	AGCT	5 cut(s)	62, 101, 110, 127, 131
AluI	AGCT	5 cut(s)	62, 101, 110, 127, 131
AoxI	GGCC	1 cut(s)	659
ApeKI	GCWGC	2 cut(s)	176, 295
Asp718I	GGTACC	1 cut(s)	482
AspS9I	GGNCC	2 cut(s)	469, 659
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	506, 602
AsuNHI	GCTAGC	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	482
BbvCI	CCTCAGC	2 cut(s)	111, 132
BbvI	GCAGC	2 cut(s)	188, 282
BccI	CCATC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	480
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	345
BfaI	CTAG	2 cut(s)	128, 697
BisI	GCNGC	2 cut(s)	177, 296
BlsI	GCNGC	2 cut(s)	178, 297
Bme1390I	CCNGG	2 cut(s)	345, 480
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	2 cut(s)	469, 659
BmiI	GGNNCC	2 cut(s)	6, 484
BmrFI	CCNGG	2 cut(s)	345, 480
BmtI	GCTAGC	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	2 cut(s)	111, 132
BpuMI	CCSGG	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	307, 511
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 277, 657
Bse1I	ACTGG	3 cut(s)	380, 433, 570
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	307, 511
BseLI	CCNNNNNNNGG	3 cut(s)	186, 277, 657
BseMII	CTCAG	3 cut(s)	102, 123, 304
BseNI	ACTGG	3 cut(s)	380, 433, 570
BseRI	GAGGAG	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	188, 282
BsgI	GTGCAG	1 cut(s)	281
BshFI	GGCC	1 cut(s)	661
BshNI	GGYRCC	1 cut(s)	482
BsiSI	CCGG	2 cut(s)	333, 344
BslI	CCNNNNNNNGG	3 cut(s)	186, 277, 657
BsnI	GGCC	1 cut(s)	661
Bsp143I	GATC	2 cut(s)	118, 595
Bsp19I	CCATGG	1 cut(s)	511
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	661
BspCNI	CTCAG	3 cut(s)	103, 124, 303
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	2 cut(s)	6, 484
BspOI	GCTAGC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	482
BsrI	ACTGG	3 cut(s)	380, 433, 570
BssECI	CCNNGG	2 cut(s)	307, 511
BssMI	GATC	2 cut(s)	118, 595
BssT1I	CCWWGG	2 cut(s)	307, 511
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	3 cut(s)	12, 270, 537
BstC8I	GCNNGC	2 cut(s)	129, 215
BstDEI	CTNAG	6 cut(s)	111, 132, 218, 236, 290, 616
BstDSI	CCRYGG	1 cut(s)	511
BstKTI	GATC	2 cut(s)	121, 598
BstMBI	GATC	2 cut(s)	118, 595
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 182, 223
BstNI	CCWGG	1 cut(s)	480
BstSCI	CCNGG	2 cut(s)	343, 478
BstV1I	GCAGC	2 cut(s)	188, 282
BstXI	CCANNNNNNTGG	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	661
BtgI	CCRYGG	1 cut(s)	511
BtsIMutI	CAGTG	2 cut(s)	471, 577
Cac8I	GCNNGC	2 cut(s)	129, 215
CciI	TCATGA	1 cut(s)	598
Cfr13I	GGNCC	2 cut(s)	469, 659
CsiI	ACCWGGT	1 cut(s)	478
Csp6I	GTAC	2 cut(s)	483, 549
CviAII	CATG	3 cut(s)	149, 512, 599
CviQI	GTAC	2 cut(s)	483, 549
DdeI	CTNAG	6 cut(s)	111, 132, 218, 236, 290, 616
DpnI	GATC	2 cut(s)	120, 597
DpnII	GATC	2 cut(s)	118, 595
Eam1104I	CTCTTC	3 cut(s)	12, 270, 537
EarI	CTCTTC	3 cut(s)	12, 270, 537
Eco130I	CCWWGG	2 cut(s)	307, 511
Eco47I	GGWCC	1 cut(s)	469
EcoO109I	RGGNCCY	1 cut(s)	659
EcoRII	CCWGG	1 cut(s)	478
EcoT14I	CCWWGG	2 cut(s)	307, 511
ErhI	CCWWGG	2 cut(s)	307, 511
FaeI	CATG	3 cut(s)	152, 515, 602
FaiI	YATR	5 cut(s)	68, 150, 263, 513, 600
FatI	CATG	3 cut(s)	148, 511, 598
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	2 cut(s)	177, 296
Fsp4HI	GCNGC	2 cut(s)	177, 296
FspBI	CTAG	2 cut(s)	128, 697
GluI	GCNGC	2 cut(s)	177, 296
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	661
HapII	CCGG	2 cut(s)	333, 344
Hin1II	CATG	3 cut(s)	152, 515, 602
HincII	GTYRAC	2 cut(s)	91, 682
HindII	GTYRAC	2 cut(s)	91, 682
HinfI	GANTC	5 cut(s)	20, 193, 286, 443, 530
HpaII	CCGG	2 cut(s)	333, 344
HphI	GGTGA	2 cut(s)	506, 602
Hpy166II	GTNNAC	3 cut(s)	91, 469, 682
Hpy188I	TCNGA	3 cut(s)	123, 268, 541
Hpy188III	TCNNGA	2 cut(s)	250, 599
Hpy8I	GTNNAC	3 cut(s)	91, 469, 682
HpyAV	CCTTC	1 cut(s)	650
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	4 cut(s)	143, 176, 213, 298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 182, 223
HpyF3I	CTNAG	6 cut(s)	111, 132, 218, 236, 290, 616
Hsp92II	CATG	3 cut(s)	152, 515, 602
KpnI	GGTACC	1 cut(s)	486
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	2 cut(s)	118, 595
LmnI	GCTCC	2 cut(s)	10, 98
Lsp1109I	GCAGC	2 cut(s)	188, 282
MabI	ACCWGGT	1 cut(s)	478
MaeI	CTAG	2 cut(s)	128, 697
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	120, 597
MboI	GATC	2 cut(s)	118, 595
MboII	GAAGA	6 cut(s)	29, 55, 128, 287, 348, 554
MfeI	CAATTG	1 cut(s)	171
MluCI	AATT	3 cut(s)	144, 171, 667
MlyI	GAGTC	2 cut(s)	29, 524
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	8 cut(s)	79, 106, 127, 248, 271, 425, 538, 581
MslI	CAYNNNNRTG	1 cut(s)	492
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	2 cut(s)	333, 344
MspR9I	CCNGG	2 cut(s)	345, 480
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	480
MwoI	GCNNNNNNNGC	3 cut(s)	107, 182, 223
NciI	CCSGG	1 cut(s)	345
NcoI	CCATGG	1 cut(s)	511
NdeII	GATC	2 cut(s)	118, 595
NheI	GCTAGC	1 cut(s)	127
NlaIII	CATG	3 cut(s)	152, 515, 602
NlaIV	GGNNCC	2 cut(s)	6, 484
PagI	TCATGA	1 cut(s)	598
PfeI	GAWTC	3 cut(s)	193, 286, 443
PkrI	GCNGC	2 cut(s)	178, 297
PleI	GAGTC	2 cut(s)	28, 524
PpsI	GAGTC	2 cut(s)	28, 524
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	2 cut(s)	6, 484
PspPI	GGNCC	2 cut(s)	469, 659
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	2 cut(s)	484, 550
RsaNI	GTAC	2 cut(s)	483, 549
RseI	CAYNNNNRTG	1 cut(s)	492
SatI	GCNGC	2 cut(s)	177, 296
Sau3AI	GATC	2 cut(s)	118, 595
Sau96I	GGNCC	2 cut(s)	469, 659
SchI	GAGTC	2 cut(s)	29, 524
ScrFI	CCNGG	2 cut(s)	345, 480
SexAI	ACCWGGT	1 cut(s)	478
SinI	GGWCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	492
Sse9I	AATT	3 cut(s)	144, 171, 667
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	2 cut(s)	128, 697
StyD4I	CCNGG	2 cut(s)	343, 478
StyI	CCWWGG	2 cut(s)	307, 511
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	1 cut(s)	349
TasI	AATT	3 cut(s)	144, 171, 667
TfiI	GAWTC	3 cut(s)	193, 286, 443
TscAI	CASTG	2 cut(s)	471, 577
TseI	GCWGC	2 cut(s)	176, 295
TspDTI	ATGAA	7 cut(s)	56, 62, 83, 137, 536, 615, 669
TspRI	CASTG	2 cut(s)	471, 577
VpaK11BI	GGWCC	1 cut(s)	469
XspI	CTAG	2 cut(s)	128, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.