FvH4_6g34880

guanosine tetraphosphate biosynthetic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011437
Physical Location & Seq
Reverse (-)
27531989 .. 27536054
4066 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34880.t4

Sequence Viewer

Length: 2196 bp
ATGACGGTTCCGATTGCTCTGTACGCGACGCCGCCGAGCAGTGTGTGCTCGCACGCCACGTTTGATTTCGAATTGAGCTCCCGATCTTCGTCTTCCGCGGCCTCGACGCCGTCCACGTCGCAGAAGCCGGCGGTGGGGGGCTTATCGTGCTTGTTCTCCTCCTCCACGGTGAAGCATGCTTCGTCTTGTTCCAGCTTTTCCGGTGGAGGAGGCGAGGAGTTAGGCTCGATGTGGCCTGATAGAGGTGAGGAGCTGAAGGAATTGAGTAGCTCGTTTCGGTATTCGCAGAGCAAGTTCAATGGGGCTTCGATGAATAATAGGGATCAGAGCCCGATTTCAGTGTTCCAGGGACCGGTTTCGAGTAGCAGCAGTGGGGTTTCGAGCTCTGCGAGGAGTCTTCCGATGAGAATTGCGAGGGAGAGGAGTAGCAATGGGGATGTGAGCTTGAATTCGATGCGGTGTGGGAGTAATGGGTTGTTTAATGGGTTTGTGAGGGGTGCTTTGGGGTCAACTTGTGTGGATTATGCCTCGCCGAGCTTTGAAGTAGGAAATGATGCTGCTGCTGTGCTTGATGAGTTGACTTTCAATATGGAGGATGGCTTTGGGGATGGCAATTTCGAGCCTTATGCAAGGGAGTTACTTATGGGCGCGCAAATGCGGCACAAGATTTTCTATGAAGATTTTGTTATCAAGGCTTTCTGTGAGGCTGAGAAAGCACACCGAGGGCAGATGCGAGCAAGTGGTGATCCATATTTGCAGCATTGTGTTGAAACGGCGGTGCTGCTCGCATTGATCGGGGCTAATTCCACAGTTGTTGCTGCAGGGCTTTTGCATGACACGCTTGATGACTCTGTTATGAGTTATGACTATATATATGGAAAATTTGGAGCAGGAGTTGCTGATTTAGTTGAAGGGGTGTCAAAGCTAAGTCATTTGAGCAAGCTTGCCCGTGATAATAATACTGCGTGCAAGACAGTTGAGGCAGACCGTTTGCATACCATGTTCCTTGCCATGGCAGATGCTCGAGCTGTTCTCATTAAATTGGCTGATCGATTGCATAATATGATGACCCTGGATGCATTGCCCTTAGCTAAACAACAAAGGTTTGCAAAAGAGACTTTGGAGATCTTTGTGCCATTGGCTAACCGACTAGGAATCTCGAGCTGGAAGGTGCAGCTAGAAAATTTATGTTTTAAGCATCTCAATCCAGATCAACACAAAGAGCTATCGTCTAAGCTTGAAGATTCATTTGATGATGCAATGATTACTTCTGCCACAGCGATATTAGACCAAGCTCTTAGAGAAAAAGCCATTTCCTACCATGTCCTCTGTGGACGGCATAAGAGCTTGTATAGTATCTACTGCAAAATGTTGAAAAAAAAACTGAACATGAGTGAAATTCATGATATACATGGGCTACGTTTGATTGTTGAGAAAGAGGAAGATTGCTATCAGGCACTGGAAGTTGTTCGACAGCTATGGACTGAGGTTCCAGGGAAGTTCAAGGACTACATAACACAACCCAAGTGTAATGGGTACCAGTCACTTCACACTGTGGTCATGGGTGAAGGCATGGTTCCCCTAGAAGTGCAAATTCGAACAAAGGAGATGCATTTGCAAGCTGAGTTTGGATTTGCTGCTCATTGGAGATACAAGGAAGGTGATTGTAAGCACCCATCATTTGTGCTTCAGATGGTTGAGTGGGCAAGATGGGTGGTTACTTGGCAATGCGAGGCAATGAGCAGAGACAGGTCATCGATTACTTATGCCGACTCAATCAGGCCACCTTGCACGTTTCCTTCTCATTCCGATGACTGCCCTTATTCTTACAAATCCCACTGTGGTGAGGATGAGCCAGTGTTCGTCATCATGATAGAGAATGACAAGATGTCTGTGCAAGAATTTGCTGCAAACTCGACGATTATGGATCTGGTTGAAAAAGCTGGGCGCGGGAGCATGAGATGGACAACATATGGACTCCCACTGAAGGAAGAACTAAGGCCTAGGCTGAACCAAATGCCAGTGAGTGATCCTACATGCAAGCTGCAGATGGGGGATGTAGTGGAGCTGACTCCAGCTATTCCTGACAAGTCATTAACAGAGTACAGGGAAGAAATCCAACGCATGTATGACCGGGGCAGGACTGTGTCAAGTGTAGGCTCTCCTGCCAGAAGTGTGGTAGGCTGGAGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008728 GO:0008893 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009605 GO:0009611 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010150 GO:0015969 GO:0015970 GO:0015979 GO:0016020 GO:0016740 GO:0016772 GO:0016778 GO:0016787 GO:0016788 GO:0016794 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0030312 GO:0031667 GO:0032501 GO:0032502 GO:0033865 GO:0033866 GO:0033875 GO:0033993 GO:0034030 GO:0034032 GO:0034033 GO:0034035 GO:0034036 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0042578 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:0090693 GO:0097305 GO:0099402 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00230 map00230
Pfam Domains
Protein Families
HD_4 RelA_SpoT

Protein Analysis

732

Amino Acids

81.09

Weight (kDa)

6.06

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HD_4 PF13328 236 - 386 5.3e-40 HD domain
HD PF01966 251 - 355 1.1e-08 HD domain
RelA_SpoT PF04607 445 - 554 5.8e-42 Region found in RelA / SpoT proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14050
fragaria_vesca FvH4_6g34880 FvH4_6g34880 FvH4_6g34880
malus_domestica MD09G1181600.v1.1 MD17G1168000.v1.1
prunus_persica Prupe.3G039700_v2.0.a1
pyrus_communis pycom09g09930 pycom17g15960
rosa_chinensis RchiOBHm_Chr2g0145751
rosa_laevigata RLG00000010129 RLG00000020166
rosa_multiflora Rmu_sc0000473.1_g000007
rosa_roxburghii Rroxscaffold_152G00434730 Rroxscaffold_2G00100470
rosa_rugosa Rorug02G0393100
rosa_samantha Rh2AG447400 Rh2BG459700 Rh2CG434200
rosa_wichuraiana Rw2G036560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1536
AccB1I GGYRCC 1 cut(s) 1536
AccII CGCG 4 cut(s) 26, 98, 650, 1950
AciI CCGC 8 cut(s) 32, 96, 98, 131, 457, 658, 776, 1950
AclWI GGATC 4 cut(s) 330, 740, 1935, 2024
AcsI RAATTY 6 cut(s) 448, 881, 1183, 1398, 1593, 1901
AcuI CTGAAG 3 cut(s) 275, 1673, 2006
AcyI GRCGYC 2 cut(s) 29, 107
AdeI CACNNNGTG 1 cut(s) 1555
AfaI GTAC 3 cut(s) 23, 1538, 2105
AfiI CCNNNNNNNGG 5 cut(s) 134, 242, 352, 1012, 1987
AgeI ACCGGT 1 cut(s) 352
AhdI GACNNNNNGTC 1 cut(s) 1888
AjiI CACGTC 1 cut(s) 117
AjnI CCWGG 3 cut(s) 345, 1071, 1492
AleI CACNNNNGTG 1 cut(s) 1842
Alw21I GWGCWC 3 cut(s) 50, 80, 386
Alw26I GTCTC 2 cut(s) 1109, 1740
AlwI GGATC 4 cut(s) 330, 740, 1935, 2024
AlwNI CAGNNNCTG 1 cut(s) 1459
Ama87I CYCGRG 2 cut(s) 1023, 1159
AoxI GGCC 4 cut(s) 99, 233, 1781, 2000
ApoI RAATTY 6 cut(s) 448, 881, 1183, 1398, 1593, 1901
AsiGI ACCGGT 1 cut(s) 352
Asp700I GAANNNNTTC 1 cut(s) 1467
Asp718I GGTACC 1 cut(s) 1536
AspA2I CCTAGG 1 cut(s) 2003
AspLEI GCGC 3 cut(s) 650, 652, 1950
AspS9I GGNCC 1 cut(s) 350
AsuC2I CCSGG 1 cut(s) 2135
AsuHPI GGTGA 6 cut(s) 181, 257, 755, 1577, 1673, 1856
AsuII TTCGAA 2 cut(s) 69, 1597
AvaI CYCGRG 2 cut(s) 1023, 1159
AvaII GGWCC 1 cut(s) 350
AvrII CCTAGG 1 cut(s) 2003
BanI GGYRCC 1 cut(s) 1536
BanII GRGCYC 3 cut(s) 80, 332, 386
BbsI GAAGAC 2 cut(s) 84, 389
Bbv12I GWGCWC 3 cut(s) 50, 80, 386
BccI CCATC 7 cut(s) 590, 602, 1684, 1687, 1704, 1956, 2044
BceAI ACGGC 3 cut(s) 94, 789, 1352
BcgI CGANNNNNNTGC 2 cut(s) 608, 642
BciT130I CCWGG 3 cut(s) 347, 1073, 1494
BcnI CCSGG 1 cut(s) 2135
BcoDI GTCTC 2 cut(s) 1109, 1740
BfaI CTAG 4 cut(s) 1151, 1178, 1583, 2004
BfmI CTRYAG 2 cut(s) 819, 2045
BglII AGATCT 1 cut(s) 1125
BlnI CCTAGG 1 cut(s) 2003
Bme1390I CCNGG 4 cut(s) 347, 1073, 1494, 2135
Bme18I GGWCC 1 cut(s) 350
BmeRI GACNNNNNGTC 1 cut(s) 1888
BmeT110I CYCGRG 2 cut(s) 1023, 1159
BmgBI CACGTC 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 5 cut(s) 9, 351, 1491, 1538, 1578
BmrFI CCNGG 4 cut(s) 347, 1073, 1494, 2135
BmsI GCATC 8 cut(s) 444, 544, 720, 1009, 1066, 1207, 1246, 1599
BpiI GAAGAC 2 cut(s) 84, 389
BplI GAGNNNNNCTC 4 cut(s) 209, 241, 1017, 1049
BpmI CTGGAG 1 cut(s) 2058
Bpu10I CCTNAGC 1 cut(s) 1087
Bpu14I TTCGAA 2 cut(s) 69, 1597
BpuMI CCSGG 1 cut(s) 2135
Bsa29I ATCGAT 2 cut(s) 1051, 1757
BsaBI GATNNNNATC 1 cut(s) 1449
BsaHI GRCGYC 2 cut(s) 29, 107
BsaJI CCNNGG 9 cut(s) 96, 165, 346, 721, 1011, 1071, 1493, 2003, 2134
BsaWI WCCGGW 2 cut(s) 200, 352
BsaXI ACNNNNNCTCC 2 cut(s) 879, 909
Bsc4I CCNNNNNNNGG 5 cut(s) 134, 242, 352, 1012, 1987
Bse118I RCCGGY 2 cut(s) 127, 352
Bse1I ACTGG 4 cut(s) 1464, 1540, 1856, 2021
Bse3DI GCAATG 5 cut(s) 436, 1079, 1266, 1733, 1743
Bse8I GATNNNNATC 1 cut(s) 1449
BseBI CCWGG 3 cut(s) 347, 1073, 1494
BseCI ATCGAT 2 cut(s) 1051, 1757
BseDI CCNNGG 9 cut(s) 96, 165, 346, 721, 1011, 1071, 1493, 2003, 2134
BseGI GGATG 6 cut(s) 442, 601, 613, 1081, 1855, 2062
BseJI GATNNNNATC 1 cut(s) 1449
BseLI CCNNNNNNNGG 5 cut(s) 134, 242, 352, 1012, 1987
BseMI GCAATG 5 cut(s) 436, 1079, 1266, 1733, 1743
BseMII CTCAG 3 cut(s) 699, 1476, 1614
BseNI ACTGG 4 cut(s) 1464, 1540, 1856, 2021
BsePI GCGCGC 1 cut(s) 648
BseRI GAGGAG 7 cut(s) 148, 151, 222, 230, 263, 406, 436
BseYI CCCAGC 1 cut(s) 1943
BsgI GTGCAG 1 cut(s) 1193
Bsh1236I CGCG 4 cut(s) 26, 98, 650, 1950
BshFI GGCC 4 cut(s) 101, 235, 1783, 2002
BshNI GGYRCC 1 cut(s) 1536
BshTI ACCGGT 1 cut(s) 352
BshVI ATCGAT 2 cut(s) 1051, 1757
BsiHKAI GWGCWC 3 cut(s) 50, 80, 386
BsiHKCI CYCGRG 2 cut(s) 1023, 1159
BsiSI CCGG 4 cut(s) 128, 201, 353, 2134
BslFI GGGAC 1 cut(s) 363
BslI CCNNNNNNNGG 5 cut(s) 134, 242, 352, 1012, 1987
BsmAI GTCTC 2 cut(s) 1109, 1740
BsmFI GGGAC 1 cut(s) 363
BsnI GGCC 4 cut(s) 101, 235, 1783, 2002
BsoBI CYCGRG 2 cut(s) 1023, 1159
Bsp119I TTCGAA 2 cut(s) 69, 1597
Bsp1286I GDGCHC 4 cut(s) 50, 80, 332, 386
Bsp143I GATC 9 cut(s) 83, 322, 745, 792, 1048, 1125, 1210, 1927, 2029
Bsp19I CCATGG 1 cut(s) 1011
BspACI CCGC 8 cut(s) 32, 96, 98, 131, 457, 658, 776, 1950
BspANI GGCC 4 cut(s) 101, 235, 1783, 2002
BspCNI CTCAG 3 cut(s) 700, 1477, 1615
BspDI ATCGAT 2 cut(s) 1051, 1757
BspFNI CGCG 4 cut(s) 26, 98, 650, 1950
BspHI TCATGA 2 cut(s) 1402, 1869
BspLI GGNNCC 5 cut(s) 9, 351, 1491, 1538, 1578
BspMAI CTGCAG 2 cut(s) 823, 2049
BspPI GGATC 4 cut(s) 330, 740, 1935, 2024
BspT104I TTCGAA 2 cut(s) 69, 1597
BspT107I GGYRCC 1 cut(s) 1536
BsrDI GCAATG 5 cut(s) 436, 1079, 1266, 1733, 1743
BsrFI RCCGGY 2 cut(s) 127, 352
BsrI ACTGG 4 cut(s) 1464, 1540, 1856, 2021
BssAI RCCGGY 2 cut(s) 127, 352
BssECI CCNNGG 9 cut(s) 96, 165, 346, 721, 1011, 1071, 1493, 2003, 2134
BssHII GCGCGC 1 cut(s) 648
BssMI GATC 9 cut(s) 83, 322, 745, 792, 1048, 1125, 1210, 1927, 2029
BssNI GRCGYC 2 cut(s) 29, 107
BssT1I CCWWGG 2 cut(s) 1011, 2003
Bst2UI CCWGG 3 cut(s) 347, 1073, 1494
Bst4CI ACNGT 8 cut(s) 7, 169, 811, 976, 989, 1555, 1841, 2146
BstACI GRCGYC 2 cut(s) 29, 107
BstAPI GCANNNNNTGC 2 cut(s) 45, 896
BstBI TTCGAA 2 cut(s) 69, 1597
BstDEI CTNAG 8 cut(s) 708, 926, 1087, 1233, 1298, 1485, 1623, 1997
BstDSI CCRYGG 3 cut(s) 96, 165, 1011
BstENI CCTNNNNNAGG 1 cut(s) 240
BstF5I GGATG 6 cut(s) 442, 601, 613, 1081, 1855, 2062
BstFNI CGCG 4 cut(s) 26, 98, 650, 1950
BstHHI GCGC 3 cut(s) 650, 652, 1950
BstKTI GATC 9 cut(s) 86, 325, 748, 795, 1051, 1128, 1213, 1930, 2032
BstMAI GTCTC 2 cut(s) 1109, 1740
BstMBI GATC 9 cut(s) 83, 322, 745, 792, 1048, 1125, 1210, 1927, 2029
BstMWI GCNNNNNNNGC 7 cut(s) 23, 45, 147, 658, 713, 838, 896
BstNI CCWGG 3 cut(s) 347, 1073, 1494
BstNSI RCATGY 3 cut(s) 179, 2040, 2128
BstSCI CCNGG 4 cut(s) 345, 1071, 1492, 2133
BstSFI CTRYAG 2 cut(s) 819, 2045
BstUI CGCG 4 cut(s) 26, 98, 650, 1950
BstV2I GAAGAC 2 cut(s) 84, 389
BstX2I RGATCY 2 cut(s) 1125, 1927
BstXI CCANNNNNNTGG 1 cut(s) 2176
BstYI RGATCY 2 cut(s) 1125, 1927
Bsu15I ATCGAT 2 cut(s) 1051, 1757
BsuRI GGCC 4 cut(s) 101, 235, 1783, 2002
BsuTUI ATCGAT 2 cut(s) 1051, 1757
BtgI CCRYGG 3 cut(s) 96, 165, 1011
BtrI CACGTC 1 cut(s) 117
BtsCI GGATG 6 cut(s) 442, 601, 613, 1081, 1855, 2062
BtsI GCAGTG 2 cut(s) 46, 376
BtsIMutI CAGTG 9 cut(s) 46, 345, 376, 1457, 1551, 1837, 1863, 1982, 2028
CaiI CAGNNNCTG 1 cut(s) 1459
CciI TCATGA 2 cut(s) 1402, 1869
CfoI GCGC 3 cut(s) 650, 652, 1950
Cfr10I RCCGGY 2 cut(s) 127, 352
Cfr13I GGNCC 1 cut(s) 350
Cfr42I CCGCGG 1 cut(s) 99
ClaI ATCGAT 2 cut(s) 1051, 1757
CseI GACGC 2 cut(s) 37, 115
Csp6I GTAC 3 cut(s) 22, 1537, 2104
CspAI ACCGGT 1 cut(s) 352
CspCI CAANNNNNGTGG 6 cut(s) 498, 533, 796, 831, 1695, 1730
CviQI GTAC 3 cut(s) 22, 1537, 2104
DdeI CTNAG 8 cut(s) 708, 926, 1087, 1233, 1298, 1485, 1623, 1997
DpnI GATC 9 cut(s) 85, 324, 747, 794, 1050, 1127, 1212, 1929, 2031
DpnII GATC 9 cut(s) 83, 322, 745, 792, 1048, 1125, 1210, 1927, 2029
DraIII CACNNNGTG 1 cut(s) 1555
DriI GACNNNNNGTC 1 cut(s) 1888
Eam1105I GACNNNNNGTC 1 cut(s) 1888
Ecl136II GAGCTC 2 cut(s) 78, 384
Eco130I CCWWGG 2 cut(s) 1011, 2003
Eco147I AGGCCT 1 cut(s) 2002
Eco24I GRGCYC 3 cut(s) 80, 332, 386
Eco47I GGWCC 1 cut(s) 350
Eco53kI GAGCTC 2 cut(s) 78, 384
Eco57I CTGAAG 3 cut(s) 275, 1673, 2006
Eco88I CYCGRG 2 cut(s) 1023, 1159
EcoICRI GAGCTC 2 cut(s) 78, 384
EcoNI CCTNNNNNAGG 1 cut(s) 240
EcoRI GAATTC 1 cut(s) 448
EcoRII CCWGG 3 cut(s) 345, 1071, 1492
EcoT14I CCWWGG 2 cut(s) 1011, 2003
EcoT22I ATGCAT 2 cut(s) 1081, 1614
EcoT38I GRGCYC 3 cut(s) 80, 332, 386
ErhI CCWWGG 2 cut(s) 1011, 2003
FaqI GGGAC 1 cut(s) 363
FauI CCCGC 1 cut(s) 1943
FauNDI CATATG 1 cut(s) 1972
FokI GGATG 6 cut(s) 449, 608, 620, 1088, 1862, 2069
FriOI GRGCYC 3 cut(s) 80, 332, 386
FspBI CTAG 4 cut(s) 1151, 1178, 1583, 2004
GlaI GCGC 3 cut(s) 649, 651, 1949
GsaI CCCAGC 1 cut(s) 1947
GsuI CTGGAG 1 cut(s) 2058
HaeIII GGCC 4 cut(s) 101, 235, 1783, 2002
HapII CCGG 4 cut(s) 128, 201, 353, 2134
HgaI GACGC 2 cut(s) 37, 115
HhaI GCGC 3 cut(s) 650, 652, 1950
Hin1I GRCGYC 2 cut(s) 29, 107
Hin6I GCGC 3 cut(s) 648, 650, 1948
HinP1I GCGC 3 cut(s) 648, 650, 1948
HincII GTYRAC 2 cut(s) 510, 579
HindII GTYRAC 2 cut(s) 510, 579
HindIII AAGCTT 2 cut(s) 941, 1235
HinfI GANTC 7 cut(s) 394, 848, 1155, 1244, 1772, 1977, 2071
HpaII CCGG 4 cut(s) 128, 201, 353, 2134
HphI GGTGA 6 cut(s) 181, 257, 755, 1577, 1673, 1856
Hpy166II GTNNAC 4 cut(s) 114, 510, 579, 1334
Hpy188I TCNGA 5 cut(s) 12, 327, 402, 1692, 1810
Hpy188III TCNNGA 6 cut(s) 81, 1159, 1208, 1403, 1870, 2084
Hpy8I GTNNAC 4 cut(s) 114, 510, 579, 1334
Hpy99I CGWCG 4 cut(s) 31, 109, 121, 1921
HpyAV CCTTC 7 cut(s) 250, 905, 1162, 1562, 1652, 1809, 1981
HpyCH4III ACNGT 8 cut(s) 7, 169, 811, 976, 989, 1555, 1841, 2146
HpyCH4IV ACGT 4 cut(s) 59, 116, 1420, 1793
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 45, 147, 658, 713, 838, 896
HpyF3I CTNAG 8 cut(s) 708, 926, 1087, 1233, 1298, 1485, 1623, 1997
HpySE526I ACGT 4 cut(s) 59, 116, 1420, 1793
Hsp92I GRCGYC 2 cut(s) 29, 107
HspAI GCGC 3 cut(s) 648, 650, 1948
KpnI GGTACC 1 cut(s) 1540
KroI GCCGGC 1 cut(s) 127
KroNI GCCGGC 1 cut(s) 129
KspI CCGCGG 1 cut(s) 99
Kzo9I GATC 9 cut(s) 83, 322, 745, 792, 1048, 1125, 1210, 1927, 2029
LmnI GCTCC 5 cut(s) 83, 250, 887, 1953, 2065
LweI GCATC 8 cut(s) 444, 544, 720, 1009, 1066, 1207, 1246, 1599
MaeI CTAG 4 cut(s) 1151, 1178, 1583, 2004
MaeII ACGT 4 cut(s) 59, 116, 1420, 1793
MaeIII GTNAC 3 cut(s) 636, 1542, 1717
MalI GATC 9 cut(s) 85, 324, 747, 794, 1050, 1127, 1212, 1929, 2031
MboI GATC 9 cut(s) 83, 322, 745, 792, 1048, 1125, 1210, 1927, 2029
MboII GAAGA 8 cut(s) 78, 84, 389, 689, 1253, 1454, 2003, 2123
MflI RGATCY 2 cut(s) 1125, 1927
MhlI GDGCHC 4 cut(s) 50, 80, 332, 386
MlyI GAGTC 5 cut(s) 403, 842, 1766, 1971, 2065
MmeI TCCRAC 1 cut(s) 2143
Mph1103I ATGCAT 2 cut(s) 1081, 1614
MroNI GCCGGC 1 cut(s) 127
MroXI GAANNNNTTC 1 cut(s) 1467
MseI TTAA 4 cut(s) 480, 1038, 1194, 2096
MslI CAYNNNNRTG 2 cut(s) 1809, 1842
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 4 cut(s) 128, 201, 353, 2134
MspR9I CCNGG 4 cut(s) 347, 1073, 1494, 2135
MvaI CCWGG 3 cut(s) 347, 1073, 1494
MvnI CGCG 4 cut(s) 26, 98, 650, 1950
MwoI GCNNNNNNNGC 7 cut(s) 23, 45, 147, 658, 713, 838, 896
NaeI GCCGGC 1 cut(s) 129
NciI CCSGG 1 cut(s) 2135
NcoI CCATGG 1 cut(s) 1011
NdeI CATATG 1 cut(s) 1972
NdeII GATC 9 cut(s) 83, 322, 745, 792, 1048, 1125, 1210, 1927, 2029
NgoMIV GCCGGC 1 cut(s) 127
NlaIV GGNNCC 5 cut(s) 9, 351, 1491, 1538, 1578
NmeAIII GCCGAG 2 cut(s) 60, 558
NmuCI GTSAC 1 cut(s) 1542
NsiI ATGCAT 2 cut(s) 1081, 1614
NspI RCATGY 3 cut(s) 179, 2040, 2128
NspV TTCGAA 2 cut(s) 69, 1597
OliI CACNNNNGTG 1 cut(s) 1842
PaeI GCATGC 1 cut(s) 179
PaeR7I CTCGAG 2 cut(s) 1023, 1159
PagI TCATGA 2 cut(s) 1402, 1869
PauI GCGCGC 1 cut(s) 648
PceI AGGCCT 1 cut(s) 2002
PcsI WCGNNNNNNNCGW 3 cut(s) 56, 113, 386
PdiI GCCGGC 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 1467
PfeI GAWTC 2 cut(s) 1155, 1244
PflFI GACNNNGTC 2 cut(s) 109, 2146
PinAI ACCGGT 1 cut(s) 352
PleI GAGTC 5 cut(s) 402, 842, 1766, 1971, 2065
PpsI GAGTC 5 cut(s) 402, 842, 1766, 1971, 2065
Psp124BI GAGCTC 2 cut(s) 80, 386
Psp6I CCWGG 3 cut(s) 345, 1071, 1492
PspFI CCCAGC 1 cut(s) 1943
PspGI CCWGG 3 cut(s) 345, 1071, 1492
PspN4I GGNNCC 5 cut(s) 9, 351, 1491, 1538, 1578
PspPI GGNCC 1 cut(s) 350
PspXI VCTCGAGB 1 cut(s) 1023
PstI CTGCAG 2 cut(s) 823, 2049
PstNI CAGNNNCTG 1 cut(s) 1459
PsuI RGATCY 2 cut(s) 1125, 1927
PsyI GACNNNGTC 2 cut(s) 109, 2146
PteI GCGCGC 1 cut(s) 648
RsaI GTAC 3 cut(s) 23, 1538, 2105
RsaNI GTAC 3 cut(s) 22, 1537, 2104
RseI CAYNNNNRTG 2 cut(s) 1809, 1842
SacI GAGCTC 2 cut(s) 80, 386
SacII CCGCGG 1 cut(s) 99
SaqAI TTAA 4 cut(s) 480, 1038, 1194, 2096
Sau3AI GATC 9 cut(s) 83, 322, 745, 792, 1048, 1125, 1210, 1927, 2029
Sau96I GGNCC 1 cut(s) 350
SchI GAGTC 5 cut(s) 403, 842, 1766, 1971, 2065
ScrFI CCNGG 4 cut(s) 347, 1073, 1494, 2135
SduI GDGCHC 4 cut(s) 50, 80, 332, 386
SfaNI GCATC 8 cut(s) 444, 544, 720, 1009, 1066, 1207, 1246, 1599
SfcI CTRYAG 2 cut(s) 819, 2045
Sfr274I CTCGAG 2 cut(s) 1023, 1159
Sfr303I CCGCGG 1 cut(s) 99
SfuI TTCGAA 2 cut(s) 69, 1597
SgrBI CCGCGG 1 cut(s) 99
SinI GGWCC 1 cut(s) 350
SlaI CTCGAG 2 cut(s) 1023, 1159
SmiMI CAYNNNNRTG 2 cut(s) 1809, 1842
SmlI CTYRAG 2 cut(s) 1023, 1159
SmoI CTYRAG 2 cut(s) 1023, 1159
SphI GCATGC 1 cut(s) 179
SseBI AGGCCT 1 cut(s) 2002
SsiI CCGC 8 cut(s) 32, 96, 98, 131, 457, 658, 776, 1950
SspMI CTAG 4 cut(s) 1151, 1178, 1583, 2004
SstI GAGCTC 2 cut(s) 80, 386
StuI AGGCCT 1 cut(s) 2002
StyD4I CCNGG 4 cut(s) 345, 1071, 1492, 2133
StyI CCWWGG 2 cut(s) 1011, 2003
TaaI ACNGT 8 cut(s) 7, 169, 811, 976, 989, 1555, 1841, 2146
TaiI ACGT 4 cut(s) 62, 119, 1423, 1796
TatI WGTACW 1 cut(s) 2103
TauI GCSGC 3 cut(s) 34, 101, 661
TfiI GAWTC 2 cut(s) 1155, 1244
Tru1I TTAA 4 cut(s) 480, 1038, 1194, 2096
Tru9I TTAA 4 cut(s) 480, 1038, 1194, 2096
TscAI CASTG 9 cut(s) 46, 345, 376, 1464, 1558, 1844, 1863, 1989, 2028
TseFI GTSAC 1 cut(s) 1542
Tsp45I GTSAC 1 cut(s) 1542
TspDTI ATGAA 4 cut(s) 326, 690, 1236, 1391
TspRI CASTG 9 cut(s) 46, 345, 376, 1464, 1558, 1844, 1863, 1989, 2028
Tth111I GACNNNGTC 2 cut(s) 109, 2146
VpaK11BI GGWCC 1 cut(s) 350
XagI CCTNNNNNAGG 1 cut(s) 240
XapI RAATTY 6 cut(s) 448, 881, 1183, 1398, 1593, 1901
XceI RCATGY 3 cut(s) 179, 2040, 2128
XcmI CCANNNNNNNNNTGG 1 cut(s) 1328
XhoI CTCGAG 2 cut(s) 1023, 1159
XmaJI CCTAGG 1 cut(s) 2003
XmnI GAANNNNTTC 1 cut(s) 1467
XspI CTAG 4 cut(s) 1151, 1178, 1583, 2004
Zsp2I ATGCAT 2 cut(s) 1081, 1614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.