Prupe.3G039700_v2.0.a1

guanosine tetraphosphate biosynthetic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011437
Physical Location & Seq
Forward (+)
2869226 .. 2874045
4820 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G039700.1

Sequence Viewer

Length: 2238 bp
ATGACGGTGCCAACAATAGCCCTGTACGCAAGCCCGCCGAGCAGTGTGTGCTCGACGACCCACCCGTGCCAGATCAATGCGCATACCTCATACGATTTCGAATTGAGCTCTCGATCTGCGTCGTCGACGGCTTCGACGGCCTCCACGTCGCAAAAGCCGGTGACTGGTGGGCTTTCGTGCCTGTTCTCATCGCCGACGGTGAAGCACGCGTCGTCCTCGTCGAGCTATTCGGGTGGAGGAGAGGAATTGGGCTCTCTATGGCACGATAGGGGCGAAGAATTGAAGGAATTGAGTAGCTCGTTTCGATATTCTCCGAGCAAGTTCAATGGGGCTTCGTTGAACCGGGACCAGAGCCCCATTTCGGTGTTTCAGGGCCCAGTTTCATCTTCCAGTAGTGGGGTTTCGAGCTCGGCGAGAAGCCCACCAATGAGAATTACACGGGAGAGGTCTAACAATGGAGATATTAGTTTGAATTCAATCCGGTGTGGGAGTAATGGGTTGTTTAATGGGTTCGTGAGAGGTGCTTTGGGCTCTTCGTGCATAGATTACGACTCGCCGAGTTTTGAGGCTCGTACTGATGCTTTGGATGTGGGTTCGTCAGCTGTGGTTCTTGATGATTTGACTTTCAATATGGAAGATGGGTTCTTGGAGGGCATTTCTGAGCCTTATGCCAAAGAATTGCTTCTGGGTGCGCAACTGCGCCACAAGATTTTCTATGAAGATTTTATTATCAAGGCTTTTTGCGAGGCCGAGAAAGCTCATAGAGGGCAGATGCGGGCAAGTGGCGATCCGTATTTGCAGCATTGTGTGGAGACTGCGGTGTTGCTCGCATTAATTGGTGCTAATTCGACAGTTGTTGCTGCAGGGCTTTTGCATGACACGCTTGATGATTCTTTTTTGTGTTATGACTATATATTTGGGAAGTTTGGAGCTGGGGTTGCTGATTTAGTGGAAGGGGTGTCTAAGCTAAGTCATCTGAGCAAGCTTGCCCGTGATAATAATACAGCAAGCAAAACAGTTGAGGCAGATCGCCTGCATACCATGTTCCTTGCCATGGCAGATGCCAGAGCTGTCCTCATTAAATTGGCAGATCGATTACATAATATGATGACACTAGATGCATTACCCTTGGCTAAGCAACAGAGGTTTGCAAAGGAGACTTTGGAGATTTTTGTACCCTTGGCCAACCGGTTAGGAATCTCTAGCTGGAAGGTGCAGCTGGAAAATTTATGTTTTAAGCATCTCAACCCAGATCAGCACAAAGAACTGTCCTCTAAGCTTCTAGATTCGTTTGATGATGCAATGATTACTTCTGCCACAGAGAGATTAGAGCGAGCTCTCAAGGATAAGGCCATTTCCTACCATGTACTTTGTGGGCGGCATAAGAGCTTGTATAGCATCTACTGCAAAATGTTAAAAAAGAAGCTAAACATGGATGAAATTCATGATATTCATGGGCTACGTTTGATTGTTGATAATGAGGAAGATTGCTACGAAGCACTGAAAGTTGTTCACCAGCTGTGGTCTGAGGTGCCAGGAAAGTTCAAGGACTACATAACTCAACCCAAGTTTAATGGGTATCAGTCACTGCACACTGTGGTGATGGGTGAAGGCATGATTCCGCTGGAAGTGCAAATTCGAACAAAGGAGATGCATTTGCAAGCTGAGTTTGGATTTGCAGCTCACTGGAGATACAAGGAAGGTGACTGTAAGCACCCCTCATTTGTGCTTCAGATGGTCGAGTGGGCCAGATGGGTGGTCACTTGGCAGTGTGAGGCAATGAGCAGAGACCGGTCATCCATTGGGTATGCTGATTCAATCAAGCCACCCTGCACGTTCCCTTCACATTCTGATGACTGTCCATATTCTTACAAACCTCACTGTGGTCAAGATGGGCCGGTGTTTGTCATCATGATAGAGAATGAAAAGATGTCTGTTCAAGAGTTTCCTACAAACTCCACGATTATGGATCTGCTGGAAAGAACTGGGCGAGGGAGCTTGAGATGGACACCATACGGGTTCCCGCTGAAGGAAGAACTGAGGCCTAGGCTGAACCATGCGGCAGTGAGTGATCCTACATGCAAGCTGCAGATGGGGGATGTGGTGGAGCTGACTCCAGCAATTCCTGATAAGTCTTTGACAGAGTACAGGGAAGAGATTCAGCGCATGTACGACCGGGGCATGAGTGTATCAAGTACAGGTCCTGCTGCTAGCAGTATGGTGGGTTGGAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008728 GO:0008893 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009150 GO:0009152 GO:0009163 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009605 GO:0009611 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010150 GO:0015969 GO:0015970 GO:0015979 GO:0016020 GO:0016740 GO:0016772 GO:0016778 GO:0016787 GO:0016788 GO:0016794 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0030312 GO:0031667 GO:0032501 GO:0032502 GO:0033865 GO:0033866 GO:0033875 GO:0033993 GO:0034030 GO:0034032 GO:0034033 GO:0034035 GO:0034036 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0042578 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:0090693 GO:0097305 GO:0099402 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00230 map00230
Pfam Domains
Protein Families
HD_4 RelA_SpoT

Protein Analysis

746

Amino Acids

82.58

Weight (kDa)

6.05

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14050
fragaria_vesca FvH4_6g34880 FvH4_6g34880 FvH4_6g34880
malus_domestica MD09G1181600.v1.1 MD17G1168000.v1.1
prunus_persica Prupe.3G039700_v2.0.a1
pyrus_communis pycom09g09930 pycom17g15960
rosa_chinensis RchiOBHm_Chr2g0145751
rosa_laevigata RLG00000010129 RLG00000020166
rosa_multiflora Rmu_sc0000473.1_g000007
rosa_roxburghii Rroxscaffold_152G00434730 Rroxscaffold_2G00100470
rosa_rugosa Rorug02G0393100
rosa_samantha Rh2AG447400 Rh2BG459700 Rh2CG434200
rosa_wichuraiana Rw2G036560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 81, 693
AccB1I GGYRCC 2 cut(s) 7, 1531
AccI GTMKAC 1 cut(s) 125
AccII CGCG 1 cut(s) 209
AciI CCGC 7 cut(s) 35, 775, 818, 1378, 1622, 2024, 2060
AclWI GGATC 3 cut(s) 782, 1977, 2066
AcoI YGGCCR 1 cut(s) 1182
AcsI RAATTY 4 cut(s) 472, 1225, 1440, 1635
AcuI CTGAAG 2 cut(s) 1715, 2048
AdeI CACNNNGTG 1 cut(s) 1597
AfaI GTAC 7 cut(s) 26, 574, 1176, 1368, 2147, 2171, 2197
AfiI CCNNNNNNNGG 6 cut(s) 164, 361, 396, 1054, 1883, 2029
AflIII ACRYGT 1 cut(s) 207
AgeI ACCGGT 2 cut(s) 1188, 1791
AgsI TTSAA 9 cut(s) 283, 325, 340, 472, 477, 628, 1546, 1818, 1940
AjiI CACGTC 1 cut(s) 147
AjnI CCWGG 1 cut(s) 1534
AleI CACNNNNGTG 1 cut(s) 1598
AloI GAACNNNNNNTCC 2 cut(s) 626, 658
Alw21I GWGCWC 4 cut(s) 53, 110, 410, 1339
Alw26I GTCTC 3 cut(s) 806, 1151, 1782
AlwI GGATC 3 cut(s) 782, 1977, 2066
AlwNI CAGNNNCTG 2 cut(s) 1588, 2204
AoxI GGCC 8 cut(s) 138, 373, 747, 1182, 1350, 1746, 1895, 2042
ApaI GGGCCC 1 cut(s) 377
ApeKI GCWGC 6 cut(s) 799, 860, 1216, 1679, 2086, 2207
ApoI RAATTY 4 cut(s) 472, 1225, 1440, 1635
ArsI GACNNNNNNTTYG 2 cut(s) 899, 931
AseI ATTAAT 1 cut(s) 833
AsiGI ACCGGT 2 cut(s) 1188, 1791
Asp700I GAANNNNTTC 2 cut(s) 681, 2157
AspA2I CCTAGG 1 cut(s) 2045
AspLEI GCGC 4 cut(s) 82, 694, 702, 2166
AspS9I GGNCC 6 cut(s) 346, 373, 374, 1746, 1895, 2201
AsuC2I CCSGG 2 cut(s) 344, 2177
AsuHPI GGTGA 6 cut(s) 172, 211, 1505, 1612, 1619, 1715
AsuII TTCGAA 2 cut(s) 99, 1639
AsuNHI GCTAGC 1 cut(s) 2210
AvaII GGWCC 2 cut(s) 346, 2201
AvrII CCTAGG 1 cut(s) 2045
BaeGI GKGCMC 1 cut(s) 377
BalI TGGCCA 1 cut(s) 1184
BanI GGYRCC 2 cut(s) 7, 1531
BanII GRGCYC 7 cut(s) 110, 254, 356, 377, 410, 533, 1339
Bbv12I GWGCWC 4 cut(s) 53, 110, 410, 1339
BbvI GCAGC 6 cut(s) 811, 847, 1228, 1691, 2073, 2194
BccI CCATC 7 cut(s) 632, 1597, 1729, 1746, 1886, 1998, 2086
BceAI ACGGC 2 cut(s) 144, 153
BciT130I CCWGG 1 cut(s) 1536
BcnI CCSGG 2 cut(s) 344, 2177
BcoDI GTCTC 3 cut(s) 806, 1151, 1782
BfaI CTAG 5 cut(s) 1115, 1203, 1283, 2046, 2211
BfmI CTRYAG 2 cut(s) 861, 2087
BisI GCNGC 8 cut(s) 800, 861, 1217, 1379, 1680, 2061, 2087, 2208
BlnI CCTAGG 1 cut(s) 2045
BlpI GCTNAGC 1 cut(s) 1134
BlsI GCNGC 8 cut(s) 801, 862, 1218, 1380, 1681, 2062, 2088, 2209
Bme1390I CCNGG 3 cut(s) 344, 1536, 2177
Bme18I GGWCC 2 cut(s) 346, 2201
BmgBI CACGTC 1 cut(s) 147
BmgT120I GGNCC 6 cut(s) 346, 373, 374, 1746, 1895, 2201
BmiI GGNNCC 5 cut(s) 9, 347, 375, 1533, 2021
BmrFI CCNGG 3 cut(s) 344, 1536, 2177
BmrI ACTGGG 2 cut(s) 371, 1995
BmsI GCATC 8 cut(s) 568, 762, 1051, 1108, 1249, 1288, 1407, 1641
BmtI GCTAGC 1 cut(s) 2214
BmuI ACTGGG 2 cut(s) 371, 1995
BplI GAGNNNNNCTC 2 cut(s) 1059, 1091
BpmI CTGGAG 2 cut(s) 1708, 2100
Bpu1102I GCTNAGC 1 cut(s) 1134
Bpu14I TTCGAA 2 cut(s) 99, 1639
BpuEI CTTGAG 2 cut(s) 1325, 2020
BpuMI CCSGG 2 cut(s) 344, 2177
Bsa29I ATCGAT 1 cut(s) 1093
BsaI GGTCTC 1 cut(s) 1782
BsaJI CCNNGG 5 cut(s) 1053, 1128, 1179, 2045, 2176
BsaWI WCCGGW 3 cut(s) 480, 1188, 1791
BsaXI ACNNNNNCTCC 2 cut(s) 921, 951
Bsc4I CCNNNNNNNGG 6 cut(s) 164, 361, 396, 1054, 1883, 2029
Bse118I RCCGGY 4 cut(s) 157, 1188, 1791, 1897
Bse1I ACTGG 5 cut(s) 169, 377, 390, 1691, 1990
Bse3DI GCAATG 2 cut(s) 1308, 1785
BseBI CCWGG 1 cut(s) 1536
BseCI ATCGAT 1 cut(s) 1093
BseDI CCNNGG 5 cut(s) 1053, 1128, 1179, 2045, 2176
BseGI GGATG 4 cut(s) 592, 1441, 1796, 2104
BseLI CCNNNNNNNGG 6 cut(s) 164, 361, 396, 1054, 1883, 2029
BseMI GCAATG 2 cut(s) 1308, 1785
BseMII CTCAG 5 cut(s) 651, 968, 1518, 1656, 2030
BseNI ACTGG 5 cut(s) 169, 377, 390, 1691, 1990
BseRI GAGGAG 1 cut(s) 252
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 6 cut(s) 811, 847, 1228, 1691, 2073, 2194
BseYI CCCAGC 1 cut(s) 932
BsgI GTGCAG 3 cut(s) 1235, 1574, 1816
Bsh1236I CGCG 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 2176
BshFI GGCC 8 cut(s) 140, 375, 749, 1184, 1352, 1748, 1897, 2044
BshNI GGYRCC 2 cut(s) 7, 1531
BshTI ACCGGT 2 cut(s) 1188, 1791
BshVI ATCGAT 1 cut(s) 1093
BsiEI CGRYCG 1 cut(s) 2176
BsiHKAI GWGCWC 4 cut(s) 53, 110, 410, 1339
BsiSI CCGG 7 cut(s) 158, 343, 481, 1189, 1792, 1898, 2176
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 6 cut(s) 164, 361, 396, 1054, 1883, 2029
BsmAI GTCTC 3 cut(s) 806, 1151, 1782
BsmFI GGGAC 1 cut(s) 359
BsnI GGCC 8 cut(s) 140, 375, 749, 1184, 1352, 1748, 1897, 2044
Bso31I GGTCTC 1 cut(s) 1782
Bsp119I TTCGAA 2 cut(s) 99, 1639
Bsp120I GGGCCC 1 cut(s) 373
Bsp1286I GDGCHC 8 cut(s) 53, 110, 254, 356, 377, 410, 533, 1339
Bsp143I GATC 8 cut(s) 72, 113, 787, 1027, 1090, 1252, 1969, 2071
Bsp1720I GCTNAGC 1 cut(s) 1134
Bsp19I CCATGG 1 cut(s) 1053
BspACI CCGC 7 cut(s) 35, 775, 818, 1378, 1622, 2024, 2060
BspANI GGCC 8 cut(s) 140, 375, 749, 1184, 1352, 1748, 1897, 2044
BspCNI CTCAG 5 cut(s) 652, 969, 1519, 1657, 2031
BspDI ATCGAT 1 cut(s) 1093
BspFNI CGCG 1 cut(s) 209
BspHI TCATGA 2 cut(s) 1444, 1911
BspLI GGNNCC 5 cut(s) 9, 347, 375, 1533, 2021
BspMAI CTGCAG 2 cut(s) 865, 2091
BspOI GCTAGC 1 cut(s) 2214
BspPI GGATC 3 cut(s) 782, 1977, 2066
BspQI GCTCTTC 1 cut(s) 538
BspT104I TTCGAA 2 cut(s) 99, 1639
BspT107I GGYRCC 2 cut(s) 7, 1531
BspTNI GGTCTC 1 cut(s) 1782
BsrDI GCAATG 2 cut(s) 1308, 1785
BsrFI RCCGGY 4 cut(s) 157, 1188, 1791, 1897
BsrI ACTGG 5 cut(s) 169, 377, 390, 1691, 1990
BssAI RCCGGY 4 cut(s) 157, 1188, 1791, 1897
BssECI CCNNGG 5 cut(s) 1053, 1128, 1179, 2045, 2176
BssMI GATC 8 cut(s) 72, 113, 787, 1027, 1090, 1252, 1969, 2071
BssT1I CCWWGG 4 cut(s) 1053, 1128, 1179, 2045
Bst2UI CCWGG 1 cut(s) 1536
Bst4CI ACNGT 9 cut(s) 7, 199, 853, 1018, 1269, 1597, 1709, 1859, 1883
Bst6I CTCTTC 2 cut(s) 538, 2148
BstAPI GCANNNNNTGC 2 cut(s) 48, 1404
BstBI TTCGAA 2 cut(s) 99, 1639
BstDEI CTNAG 9 cut(s) 660, 963, 968, 977, 1134, 1275, 1527, 1665, 2039
BstDSI CCRYGG 1 cut(s) 1053
BstF5I GGATG 4 cut(s) 592, 1441, 1796, 2104
BstFNI CGCG 1 cut(s) 209
BstHHI GCGC 4 cut(s) 82, 694, 702, 2166
BstKTI GATC 8 cut(s) 75, 116, 790, 1030, 1093, 1255, 1972, 2074
BstMAI GTCTC 3 cut(s) 806, 1151, 1782
BstMBI GATC 8 cut(s) 72, 113, 787, 1027, 1090, 1252, 1969, 2071
BstMCI CGRYCG 1 cut(s) 2176
BstNI CCWGG 1 cut(s) 1536
BstNSI RCATGY 2 cut(s) 2082, 2170
BstSCI CCNGG 3 cut(s) 342, 1534, 2175
BstSFI CTRYAG 2 cut(s) 861, 2087
BstSLI GKGCMC 1 cut(s) 377
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 6 cut(s) 811, 847, 1228, 1691, 2073, 2194
BstX2I RGATCY 1 cut(s) 1969
BstXI CCANNNNNNTGG 2 cut(s) 1756, 1966
BstYI RGATCY 1 cut(s) 1969
Bsu15I ATCGAT 1 cut(s) 1093
BsuRI GGCC 8 cut(s) 140, 375, 749, 1184, 1352, 1748, 1897, 2044
BsuTUI ATCGAT 1 cut(s) 1093
BtgI CCRYGG 1 cut(s) 1053
BtgZI GCGATG 1 cut(s) 174
BtrI CACGTC 1 cut(s) 147
BtsCI GGATG 4 cut(s) 592, 1441, 1796, 2104
BtsI GCAGTG 4 cut(s) 49, 1586, 1775, 2070
BtsIMutI CAGTG 8 cut(s) 49, 1499, 1586, 1593, 1684, 1775, 1879, 2070
CaiI CAGNNNCTG 2 cut(s) 1588, 2204
CciI TCATGA 2 cut(s) 1444, 1911
CfoI GCGC 4 cut(s) 82, 694, 702, 2166
Cfr10I RCCGGY 4 cut(s) 157, 1188, 1791, 1897
Cfr13I GGNCC 6 cut(s) 346, 373, 374, 1746, 1895, 2201
ClaI ATCGAT 1 cut(s) 1093
CseI GACGC 2 cut(s) 108, 198
Csp6I GTAC 7 cut(s) 25, 573, 1175, 1367, 2146, 2170, 2196
CspAI ACCGGT 2 cut(s) 1188, 1791
CviQI GTAC 7 cut(s) 25, 573, 1175, 1367, 2146, 2170, 2196
DdeI CTNAG 9 cut(s) 660, 963, 968, 977, 1134, 1275, 1527, 1665, 2039
DpnI GATC 8 cut(s) 74, 115, 789, 1029, 1092, 1254, 1971, 2073
DpnII GATC 8 cut(s) 72, 113, 787, 1027, 1090, 1252, 1969, 2071
DraIII CACNNNGTG 1 cut(s) 1597
EaeI YGGCCR 1 cut(s) 1182
Eam1104I CTCTTC 2 cut(s) 538, 2148
EarI CTCTTC 2 cut(s) 538, 2148
Ecl136II GAGCTC 3 cut(s) 108, 408, 1337
Eco130I CCWWGG 4 cut(s) 1053, 1128, 1179, 2045
Eco147I AGGCCT 1 cut(s) 2044
Eco24I GRGCYC 7 cut(s) 110, 254, 356, 377, 410, 533, 1339
Eco31I GGTCTC 1 cut(s) 1782
Eco47I GGWCC 2 cut(s) 346, 2201
Eco53kI GAGCTC 3 cut(s) 108, 408, 1337
Eco57I CTGAAG 2 cut(s) 1715, 2048
EcoICRI GAGCTC 3 cut(s) 108, 408, 1337
EcoO109I RGGNCCY 2 cut(s) 373, 2201
EcoRI GAATTC 1 cut(s) 472
EcoRII CCWGG 1 cut(s) 1534
EcoT14I CCWWGG 4 cut(s) 1053, 1128, 1179, 2045
EcoT22I ATGCAT 2 cut(s) 1123, 1656
EcoT38I GRGCYC 7 cut(s) 110, 254, 356, 377, 410, 533, 1339
ErhI CCWWGG 4 cut(s) 1053, 1128, 1179, 2045
FalI AAGNNNNNCTT 2 cut(s) 666, 698
FaqI GGGAC 1 cut(s) 359
FauI CCCGC 3 cut(s) 42, 768, 2031
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 8 cut(s) 800, 861, 1217, 1379, 1680, 2061, 2087, 2208
FokI GGATG 4 cut(s) 599, 1448, 1783, 2111
FriOI GRGCYC 7 cut(s) 110, 254, 356, 377, 410, 533, 1339
Fsp4HI GCNGC 8 cut(s) 800, 861, 1217, 1379, 1680, 2061, 2087, 2208
FspAI RTGCGCAY 1 cut(s) 81
FspBI CTAG 5 cut(s) 1115, 1203, 1283, 2046, 2211
FspI TGCGCA 2 cut(s) 81, 693
GlaI GCGC 4 cut(s) 81, 693, 701, 2165
GluI GCNGC 8 cut(s) 800, 861, 1217, 1379, 1680, 2061, 2087, 2208
GsaI CCCAGC 1 cut(s) 936
GsuI CTGGAG 2 cut(s) 1708, 2100
HaeIII GGCC 8 cut(s) 140, 375, 749, 1184, 1352, 1748, 1897, 2044
HapII CCGG 7 cut(s) 158, 343, 481, 1189, 1792, 1898, 2176
HgaI GACGC 2 cut(s) 108, 198
HhaI GCGC 4 cut(s) 82, 694, 702, 2166
Hin6I GCGC 4 cut(s) 80, 692, 700, 2164
HinP1I GCGC 4 cut(s) 80, 692, 700, 2164
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HindIII AAGCTT 2 cut(s) 983, 1277
HinfI GANTC 8 cut(s) 551, 890, 1197, 1286, 1618, 1814, 2113, 2158
HpaII CCGG 7 cut(s) 158, 343, 481, 1189, 1792, 1898, 2176
HphI GGTGA 6 cut(s) 172, 211, 1505, 1612, 1619, 1715
Hpy166II GTNNAC 2 cut(s) 126, 1513
Hpy188I TCNGA 6 cut(s) 315, 661, 978, 1528, 1734, 1852
Hpy188III TCNNGA 9 cut(s) 111, 514, 611, 1283, 1445, 1889, 1912, 1940, 2126
Hpy8I GTNNAC 2 cut(s) 126, 1513
Hpy99I CGWCG 9 cut(s) 58, 124, 127, 130, 139, 151, 199, 214, 223
HpyAV CCTTC 7 cut(s) 277, 947, 1204, 1604, 1694, 1851, 2023
HpyCH4III ACNGT 9 cut(s) 7, 199, 853, 1018, 1269, 1597, 1709, 1859, 1883
HpyCH4IV ACGT 3 cut(s) 146, 1462, 1835
HpyF3I CTNAG 9 cut(s) 660, 963, 968, 977, 1134, 1275, 1527, 1665, 2039
HpySE526I ACGT 3 cut(s) 146, 1462, 1835
HspAI GCGC 4 cut(s) 80, 692, 700, 2164
Kzo9I GATC 8 cut(s) 72, 113, 787, 1027, 1090, 1252, 1969, 2071
LguI GCTCTTC 1 cut(s) 538
LmnI GCTCC 3 cut(s) 929, 1995, 2107
Lsp1109I GCAGC 6 cut(s) 811, 847, 1228, 1691, 2073, 2194
LweI GCATC 8 cut(s) 568, 762, 1051, 1108, 1249, 1288, 1407, 1641
MaeI CTAG 5 cut(s) 1115, 1203, 1283, 2046, 2211
MaeII ACGT 3 cut(s) 146, 1462, 1835
MaeIII GTNAC 4 cut(s) 160, 1584, 1703, 1759
MalI GATC 8 cut(s) 74, 115, 789, 1029, 1092, 1254, 1971, 2073
MboI GATC 8 cut(s) 72, 113, 787, 1027, 1090, 1252, 1969, 2071
MboII GAAGA 8 cut(s) 287, 378, 525, 647, 731, 1496, 2045, 2165
MflI RGATCY 1 cut(s) 1969
MhlI GDGCHC 8 cut(s) 53, 110, 254, 356, 377, 410, 533, 1339
MlsI TGGCCA 1 cut(s) 1184
MluI ACGCGT 1 cut(s) 207
MluNI TGGCCA 1 cut(s) 1184
MlyI GAGTC 2 cut(s) 545, 2107
MmeI TCCRAC 1 cut(s) 2207
Mox20I TGGCCA 1 cut(s) 1184
Mph1103I ATGCAT 2 cut(s) 1123, 1656
MroXI GAANNNNTTC 2 cut(s) 681, 2157
MscI TGGCCA 1 cut(s) 1184
MseI TTAA 6 cut(s) 504, 833, 1080, 1236, 1415, 1572
MslI CAYNNNNRTG 4 cut(s) 362, 1598, 1851, 1964
Msp20I TGGCCA 1 cut(s) 1184
MspA1I CMGCKG 5 cut(s) 602, 1219, 1519, 1624, 2026
MspI CCGG 7 cut(s) 158, 343, 481, 1189, 1792, 1898, 2176
MspR9I CCNGG 3 cut(s) 344, 1536, 2177
MvaI CCWGG 1 cut(s) 1536
MvnI CGCG 1 cut(s) 209
NciI CCSGG 2 cut(s) 344, 2177
NcoI CCATGG 1 cut(s) 1053
NdeII GATC 8 cut(s) 72, 113, 787, 1027, 1090, 1252, 1969, 2071
NheI GCTAGC 1 cut(s) 2210
NlaIV GGNNCC 5 cut(s) 9, 347, 375, 1533, 2021
NmeAIII GCCGAG 4 cut(s) 63, 389, 582, 775
NmuCI GTSAC 4 cut(s) 160, 1584, 1703, 1759
NsbI TGCGCA 2 cut(s) 81, 693
NsiI ATGCAT 2 cut(s) 1123, 1656
NspI RCATGY 2 cut(s) 2082, 2170
NspV TTCGAA 2 cut(s) 99, 1639
OliI CACNNNNGTG 1 cut(s) 1598
PagI TCATGA 2 cut(s) 1444, 1911
PceI AGGCCT 1 cut(s) 2044
PciSI GCTCTTC 1 cut(s) 538
PcsI WCGNNNNNNNCGW 6 cut(s) 62, 131, 143, 218, 270, 410
PdmI GAANNNNTTC 2 cut(s) 681, 2157
PfeI GAWTC 6 cut(s) 890, 1197, 1286, 1618, 1814, 2158
PinAI ACCGGT 2 cut(s) 1188, 1791
PkrI GCNGC 8 cut(s) 801, 862, 1218, 1380, 1681, 2062, 2088, 2209
PleI GAGTC 2 cut(s) 545, 2107
PpsI GAGTC 2 cut(s) 545, 2107
PpuMI RGGWCCY 1 cut(s) 2201
PshBI ATTAAT 1 cut(s) 833
Psp124BI GAGCTC 3 cut(s) 110, 410, 1339
Psp5II RGGWCCY 1 cut(s) 2201
Psp6I CCWGG 1 cut(s) 1534
PspFI CCCAGC 1 cut(s) 932
PspGI CCWGG 1 cut(s) 1534
PspN4I GGNNCC 5 cut(s) 9, 347, 375, 1533, 2021
PspOMI GGGCCC 1 cut(s) 373
PspPI GGNCC 6 cut(s) 346, 373, 374, 1746, 1895, 2201
PspPPI RGGWCCY 1 cut(s) 2201
PstI CTGCAG 2 cut(s) 865, 2091
PstNI CAGNNNCTG 2 cut(s) 1588, 2204
PsuI RGATCY 1 cut(s) 1969
PvuII CAGCTG 3 cut(s) 602, 1219, 1519
RsaI GTAC 7 cut(s) 26, 574, 1176, 1368, 2147, 2171, 2197
RsaNI GTAC 7 cut(s) 25, 573, 1175, 1367, 2146, 2170, 2196
RseI CAYNNNNRTG 4 cut(s) 362, 1598, 1851, 1964
SacI GAGCTC 3 cut(s) 110, 410, 1339
SalI GTCGAC 1 cut(s) 124
SapI GCTCTTC 1 cut(s) 538
SaqAI TTAA 6 cut(s) 504, 833, 1080, 1236, 1415, 1572
SatI GCNGC 8 cut(s) 800, 861, 1217, 1379, 1680, 2061, 2087, 2208
Sau3AI GATC 8 cut(s) 72, 113, 787, 1027, 1090, 1252, 1969, 2071
Sau96I GGNCC 6 cut(s) 346, 373, 374, 1746, 1895, 2201
SchI GAGTC 2 cut(s) 545, 2107
ScrFI CCNGG 3 cut(s) 344, 1536, 2177
SduI GDGCHC 8 cut(s) 53, 110, 254, 356, 377, 410, 533, 1339
SfaNI GCATC 8 cut(s) 568, 762, 1051, 1108, 1249, 1288, 1407, 1641
SfcI CTRYAG 2 cut(s) 861, 2087
SfuI TTCGAA 2 cut(s) 99, 1639
SgrDI CGTCGACG 1 cut(s) 124
SinI GGWCC 2 cut(s) 346, 2201
SmiMI CAYNNNNRTG 4 cut(s) 362, 1598, 1851, 1964
SmlI CTYRAG 2 cut(s) 1340, 1999
SmoI CTYRAG 2 cut(s) 1340, 1999
SseBI AGGCCT 1 cut(s) 2044
SsiI CCGC 7 cut(s) 35, 775, 818, 1378, 1622, 2024, 2060
SspMI CTAG 5 cut(s) 1115, 1203, 1283, 2046, 2211
SstI GAGCTC 3 cut(s) 110, 410, 1339
StuI AGGCCT 1 cut(s) 2044
StyD4I CCNGG 3 cut(s) 342, 1534, 2175
StyI CCWWGG 4 cut(s) 1053, 1128, 1179, 2045
TaaI ACNGT 9 cut(s) 7, 199, 853, 1018, 1269, 1597, 1709, 1859, 1883
TaiI ACGT 3 cut(s) 149, 1465, 1838
TatI WGTACW 3 cut(s) 1366, 2145, 2195
TauI GCSGC 2 cut(s) 1381, 2063
TfiI GAWTC 6 cut(s) 890, 1197, 1286, 1618, 1814, 2158
Tru1I TTAA 6 cut(s) 504, 833, 1080, 1236, 1415, 1572
Tru9I TTAA 6 cut(s) 504, 833, 1080, 1236, 1415, 1572
TscAI CASTG 8 cut(s) 49, 1506, 1593, 1600, 1691, 1775, 1886, 2070
TseFI GTSAC 4 cut(s) 160, 1584, 1703, 1759
TseI GCWGC 6 cut(s) 799, 860, 1216, 1679, 2086, 2207
Tsp45I GTSAC 4 cut(s) 160, 1584, 1703, 1759
TspDTI ATGAA 6 cut(s) 372, 732, 1433, 1442, 1452, 1938
TspGWI ACGGA 1 cut(s) 780
TspRI CASTG 8 cut(s) 49, 1506, 1593, 1600, 1691, 1775, 1886, 2070
VpaK11BI GGWCC 2 cut(s) 346, 2201
VspI ATTAAT 1 cut(s) 833
XapI RAATTY 4 cut(s) 472, 1225, 1440, 1635
XbaI TCTAGA 1 cut(s) 1282
XceI RCATGY 2 cut(s) 2082, 2170
XcmI CCANNNNNNNNNTGG 1 cut(s) 1370
XmaJI CCTAGG 1 cut(s) 2045
XmiI GTMKAC 1 cut(s) 125
XmnI GAANNNNTTC 2 cut(s) 681, 2157
XspI CTAG 5 cut(s) 1115, 1203, 1283, 2046, 2211
Zsp2I ATGCAT 2 cut(s) 1123, 1656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.