Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010586

Physical Location & Seq

Genomic Coordinates Forward (+)

28345916 .. 28347531

Gene Structure 1616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g35970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAGGAAATCTCCTGTTCATTCAAAATATGAGATGGGTTTTGATGGCAGCAATAGATTTGATCCCCAGAATGACTTTTATGAGTTTTTAGAAGAAGCAAAACAGTATGCTTTAGAATCAGACTTTCAGACATCATCAACTTCATATCCAGAAGAAAGTGGAGAAAGAAGATCAGGGCAAGAGAAGAAGAAGAAATCATGGAAGAAATTACTGTTCCCGTGGTTGAAGGGCGAGAAGTTGAGCAAAACTAGCACAAAACCAGCAACCAAATCTCAAGTATCTGATGCAAGAAGGACTAATGTTTCTGGTCCGGTATTTGGCACCGGCAAGGCAATGGATGGCAGGCTCCGGCGCCCCTTATCTGGGCCTATTAACAGTCTGTTTAGACCAACAAAAAGAACAGATAGTGAGGTGCCCTACAAGTGTCTAGACAAGACCGGCAGCACTCAAGTTGTTCAGACATATGGTCCTGTTTATCTGGTGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

18.45

Weight (kDa)

9.76

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010586)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35970
malus_domestica	MD09G1172200.v1.1 MD17G1154700.v1.1
prunus_persica	Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1
pyrus_communis	pycom09g08980 pycom17g14750
rosa_chinensis	RchiOBHm_Chr2g0148091
rosa_laevigata	RLG00000020312
rosa_multiflora	Rmu_sc0002002.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099160
rosa_rugosa	Rorug02G0403500 Rorug02G0403500
rosa_samantha	Rh2AG461200 Rh2BG475000 Rh2CG448300 Rh2DG483600
rosa_wichuraiana	Rw2G037650 Rw5G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	320, 351, 412
AclWI	GGATC	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	352
AfiI	CCNNNNNNNGG	3 cut(s)	317, 362, 363
AgsI	TTSAA	2 cut(s)	24, 226
AhdI	GACNNNNNGTC	1 cut(s)	465
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	2 cut(s)	48, 441
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	3 cut(s)	308, 365, 467
AvaII	GGWCC	2 cut(s)	308, 467
BaeGI	GKGCMC	1 cut(s)	417
BanI	GGYRCC	3 cut(s)	320, 351, 412
BbvI	GCAGC	2 cut(s)	60, 453
BccI	CCATC	3 cut(s)	28, 38, 332
BfaI	CTAG	2 cut(s)	249, 428
BfoI	RGCGCY	1 cut(s)	355
BisI	GCNGC	2 cut(s)	49, 442
BlsI	GCNGC	2 cut(s)	50, 443
Bme18I	GGWCC	2 cut(s)	308, 467
BmeRI	GACNNNNNGTC	1 cut(s)	465
BmgT120I	GGNCC	3 cut(s)	308, 365, 467
BmiI	GGNNCC	4 cut(s)	322, 347, 353, 414
BmsI	GCATC	1 cut(s)	274
BplI	GAGNNNNNCTC	1 cut(s)	27
BpuEI	CTTGAG	2 cut(s)	258, 432
BsaHI	GRCGYC	1 cut(s)	352
BsaJI	CCNNGG	1 cut(s)	218
BsaWI	WCCGGW	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	3 cut(s)	317, 362, 363
Bse118I	RCCGGY	2 cut(s)	323, 437
Bse3DI	GCAATG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	218
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	3 cut(s)	317, 362, 363
BseMI	GCAATG	1 cut(s)	339
BseSI	GKGCMC	1 cut(s)	417
BseXI	GCAGC	2 cut(s)	60, 453
BshFI	GGCC	1 cut(s)	367
BshNI	GGYRCC	3 cut(s)	320, 351, 412
BsiSI	CCGG	4 cut(s)	311, 324, 349, 438
BslI	CCNNNNNNNGG	3 cut(s)	317, 362, 363
BsnI	GGCC	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp143I	GATC	2 cut(s)	61, 170
BspANI	GGCC	1 cut(s)	367
BspLI	GGNNCC	4 cut(s)	322, 347, 353, 414
BspPI	GGATC	1 cut(s)	56
BspT107I	GGYRCC	3 cut(s)	320, 351, 412
BsrDI	GCAATG	1 cut(s)	339
BsrFI	RCCGGY	2 cut(s)	323, 437
BssAI	RCCGGY	2 cut(s)	323, 437
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	2 cut(s)	61, 170
BssNI	GRCGYC	1 cut(s)	352
Bst4CI	ACNGT	3 cut(s)	105, 213, 377
BstACI	GRCGYC	1 cut(s)	352
BstC8I	GCNNGC	1 cut(s)	344
BstDSI	CCRYGG	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	343
BstH2I	RGCGCY	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	2 cut(s)	64, 173
BstMBI	GATC	2 cut(s)	61, 170
BstMWI	GCNNNNNNNGC	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	417
BstV1I	GCAGC	2 cut(s)	60, 453
BsuRI	GGCC	1 cut(s)	367
BtgI	CCRYGG	1 cut(s)	218
BtsCI	GGATG	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	344
CfoI	GCGC	1 cut(s)	354
Cfr10I	RCCGGY	2 cut(s)	323, 437
Cfr13I	GGNCC	3 cut(s)	308, 365, 467
CviAII	CATG	1 cut(s)	198
CviJI	RGCY	2 cut(s)	346, 367
CviKI_1	RGCY	2 cut(s)	346, 367
DinI	GGCGCC	1 cut(s)	353
DpnI	GATC	2 cut(s)	63, 172
DpnII	GATC	2 cut(s)	61, 170
DriI	GACNNNNNGTC	1 cut(s)	465
Eam1105I	GACNNNNNGTC	1 cut(s)	465
Eco47I	GGWCC	2 cut(s)	308, 467
EgeI	GGCGCC	1 cut(s)	353
EheI	GGCGCC	1 cut(s)	353
FaeI	CATG	1 cut(s)	201
FaiI	YATR	7 cut(s)	30, 81, 108, 145, 199, 463, 465
FatI	CATG	1 cut(s)	197
FauNDI	CATATG	1 cut(s)	463
Fnu4HI	GCNGC	2 cut(s)	49, 442
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	2 cut(s)	49, 442
FspBI	CTAG	2 cut(s)	249, 428
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	2 cut(s)	49, 442
HaeII	RGCGCY	1 cut(s)	355
HaeIII	GGCC	1 cut(s)	367
HapII	CCGG	4 cut(s)	311, 324, 349, 438
HhaI	GCGC	1 cut(s)	354
Hin1I	GRCGYC	1 cut(s)	352
Hin1II	CATG	1 cut(s)	201
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	4 cut(s)	311, 324, 349, 438
Hpy188I	TCNGA	4 cut(s)	121, 129, 283, 459
Hpy188III	TCNNGA	2 cut(s)	149, 428
HpyAV	CCTTC	2 cut(s)	220, 285
HpyCH4III	ACNGT	3 cut(s)	105, 213, 377
HpyCH4V	TGCA	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	352
Hsp92II	CATG	1 cut(s)	201
HspAI	GCGC	1 cut(s)	352
KasI	GGCGCC	1 cut(s)	351
Kzo9I	GATC	2 cut(s)	61, 170
LmnI	GCTCC	1 cut(s)	351
Lsp1109I	GCAGC	2 cut(s)	60, 453
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	2 cut(s)	249, 428
MalI	GATC	2 cut(s)	63, 172
MboI	GATC	2 cut(s)	61, 170
MboII	GAAGA	7 cut(s)	104, 164, 180, 196, 199, 202, 214
MhlI	GDGCHC	1 cut(s)	417
MluCI	AATT	1 cut(s)	206
Mly113I	GGCGCC	1 cut(s)	352
MnlI	CCTC	1 cut(s)	403
MseI	TTAA	1 cut(s)	372
MspI	CCGG	4 cut(s)	311, 324, 349, 438
MwoI	GCNNNNNNNGC	1 cut(s)	249
NarI	GGCGCC	1 cut(s)	352
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	2 cut(s)	61, 170
NlaIII	CATG	1 cut(s)	201
NlaIV	GGNNCC	4 cut(s)	322, 347, 353, 414
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	50, 443
PluTI	GGCGCC	1 cut(s)	355
PspN4I	GGNNCC	4 cut(s)	322, 347, 353, 414
PspPI	GGNCC	3 cut(s)	308, 365, 467
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	2 cut(s)	49, 442
Sau3AI	GATC	2 cut(s)	61, 170
Sau96I	GGNCC	3 cut(s)	308, 365, 467
SduI	GDGCHC	1 cut(s)	417
SetI	ASST	1 cut(s)	414
SfaNI	GCATC	1 cut(s)	274
SfoI	GGCGCC	1 cut(s)	353
SinI	GGWCC	2 cut(s)	308, 467
SmlI	CTYRAG	2 cut(s)	273, 447
SmoI	CTYRAG	2 cut(s)	273, 447
Sse9I	AATT	1 cut(s)	206
SspDI	GGCGCC	1 cut(s)	351
SspMI	CTAG	2 cut(s)	249, 428
TaaI	ACNGT	3 cut(s)	105, 213, 377
TasI	AATT	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseI	GCWGC	2 cut(s)	48, 441
TspDTI	ATGAA	2 cut(s)	8, 132
VpaK11BI	GGWCC	2 cut(s)	308, 467
XbaI	TCTAGA	1 cut(s)	427
XspI	CTAG	2 cut(s)	249, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.