Rmu_sc0002002.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002002.1
OG0010586
Physical Location & Seq
Reverse (-)
38058 .. 38549
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002002.1_g000013.1.cds

Sequence Viewer

Length: 492 bp
atgcagaaatctcatgttcatccaaaatatgagatggggtttgatggcagcaatcgatttgatcctcagaatgatttctatgagtttttggaagaagcaaaacactatgcattagaatcagactttcagacatcatcaacttcctatctagaagaaactggagaaagaagatcagggcaagagaagaagaagaagaaatcatggaagaaattactatttccatggttgaaaggcgagaaggttaacaaaactagcacaaaatcagcaaccaaatctcaagtatctgatgcaagacggactaatgtttctggtccggtatttggcaccggcaaggctatggatggcagactccggcgccccttatccgggcctattaacagtctgttcagaccaaccataagagcagatagtgaggtaccctataagtgtctagacaagtccggcaaccctcaagttgttcaaacgtatggccctgtttatctagtgagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.6

Weight (kDa)

9.68

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 415
AccB1I GGYRCC 3 cut(s) 323, 354, 415
AclWI GGATC 1 cut(s) 56
AcyI GRCGYC 1 cut(s) 355
AfaI GTAC 1 cut(s) 417
AfiI CCNNNNNNNGG 3 cut(s) 320, 365, 366
AgsI TTSAA 2 cut(s) 229, 461
AlwI GGATC 1 cut(s) 56
AoxI GGCC 2 cut(s) 368, 469
ApeKI GCWGC 1 cut(s) 48
Asp700I GAANNNNTTC 1 cut(s) 74
Asp718I GGTACC 1 cut(s) 415
AspLEI GCGC 1 cut(s) 357
AspS9I GGNCC 3 cut(s) 311, 368, 470
AsuC2I CCSGG 1 cut(s) 367
AvaII GGWCC 1 cut(s) 311
BanI GGYRCC 3 cut(s) 323, 354, 415
BbvI GCAGC 1 cut(s) 60
BccI CCATC 3 cut(s) 28, 38, 335
BcnI CCSGG 1 cut(s) 367
BfaI CTAG 4 cut(s) 149, 252, 431, 482
BfoI RGCGCY 1 cut(s) 358
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
Bme1390I CCNGG 1 cut(s) 367
Bme18I GGWCC 1 cut(s) 311
BmgT120I GGNCC 3 cut(s) 311, 368, 470
BmiI GGNNCC 3 cut(s) 325, 356, 417
BmrFI CCNGG 1 cut(s) 367
BmsI GCATC 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 180
BpuEI CTTGAG 2 cut(s) 261, 435
BpuMI CCSGG 1 cut(s) 367
Bsa29I ATCGAT 1 cut(s) 55
BsaHI GRCGYC 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 313
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 365, 366
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 163
BseCI ATCGAT 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 2 cut(s) 19, 346
BseLI CCNNNNNNNGG 3 cut(s) 320, 365, 366
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 60
BshFI GGCC 2 cut(s) 370, 471
BshNI GGYRCC 3 cut(s) 323, 354, 415
BshVI ATCGAT 1 cut(s) 55
BsiSI CCGG 5 cut(s) 314, 327, 352, 366, 441
BslI CCNNNNNNNGG 3 cut(s) 320, 365, 366
BsnI GGCC 2 cut(s) 370, 471
Bsp143I GATC 2 cut(s) 61, 170
Bsp19I CCATGG 1 cut(s) 221
BspANI GGCC 2 cut(s) 370, 471
BspCNI CTCAG 1 cut(s) 79
BspDI ATCGAT 1 cut(s) 55
BspLI GGNNCC 3 cut(s) 325, 356, 417
BspPI GGATC 1 cut(s) 56
BspT107I GGYRCC 3 cut(s) 323, 354, 415
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 1 cut(s) 163
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 2 cut(s) 61, 170
BssNI GRCGYC 1 cut(s) 355
BssT1I CCWWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 380
BstACI GRCGYC 1 cut(s) 355
BstDEI CTNAG 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 221
BstF5I GGATG 2 cut(s) 19, 346
BstH2I RGCGCY 1 cut(s) 358
BstHHI GCGC 1 cut(s) 357
BstKTI GATC 2 cut(s) 64, 173
BstMBI GATC 2 cut(s) 61, 170
BstSCI CCNGG 1 cut(s) 365
BstV1I GCAGC 1 cut(s) 60
Bsu15I ATCGAT 1 cut(s) 55
BsuRI GGCC 2 cut(s) 370, 471
BsuTUI ATCGAT 1 cut(s) 55
BtgI CCRYGG 1 cut(s) 221
BtsCI GGATG 2 cut(s) 19, 346
CfoI GCGC 1 cut(s) 357
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 3 cut(s) 311, 368, 470
ClaI ATCGAT 1 cut(s) 55
Csp6I GTAC 1 cut(s) 416
CviAII CATG 3 cut(s) 14, 201, 222
CviJI RGCY 3 cut(s) 335, 370, 471
CviKI_1 RGCY 3 cut(s) 335, 370, 471
CviQI GTAC 1 cut(s) 416
DdeI CTNAG 1 cut(s) 66
DinI GGCGCC 1 cut(s) 356
DpnI GATC 2 cut(s) 63, 172
DpnII GATC 2 cut(s) 61, 170
Eco130I CCWWGG 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 221
EcoT22I ATGCAT 1 cut(s) 112
EgeI GGCGCC 1 cut(s) 356
EheI GGCGCC 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 3 cut(s) 17, 204, 225
FatI CATG 3 cut(s) 13, 200, 221
Fnu4HI GCNGC 1 cut(s) 49
FokI GGATG 2 cut(s) 6, 353
Fsp4HI GCNGC 1 cut(s) 49
FspBI CTAG 4 cut(s) 149, 252, 431, 482
GlaI GCGC 1 cut(s) 356
GluI GCNGC 1 cut(s) 49
GsuI CTGGAG 1 cut(s) 180
HaeII RGCGCY 1 cut(s) 358
HaeIII GGCC 2 cut(s) 370, 471
HapII CCGG 5 cut(s) 314, 327, 352, 366, 441
HhaI GCGC 1 cut(s) 357
Hin1I GRCGYC 1 cut(s) 355
Hin1II CATG 3 cut(s) 17, 204, 225
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 2 cut(s) 116, 348
HpaI GTTAAC 1 cut(s) 244
HpaII CCGG 5 cut(s) 314, 327, 352, 366, 441
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 5 cut(s) 69, 121, 129, 286, 389
Hpy188III TCNNGA 2 cut(s) 149, 431
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4IV ACGT 1 cut(s) 464
HpyCH4V TGCA 3 cut(s) 4, 110, 290
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 464
Hsp92I GRCGYC 1 cut(s) 355
Hsp92II CATG 3 cut(s) 17, 204, 225
HspAI GCGC 1 cut(s) 355
KasI GGCGCC 1 cut(s) 354
KpnI GGTACC 1 cut(s) 419
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 2 cut(s) 61, 170
LpnPI CCDG 9 cut(s) 144, 159, 294, 327, 340, 365, 379, 454, 486
Lsp1109I GCAGC 1 cut(s) 60
LweI GCATC 1 cut(s) 277
MaeI CTAG 4 cut(s) 149, 252, 431, 482
MaeII ACGT 1 cut(s) 464
MalI GATC 2 cut(s) 63, 172
MboI GATC 2 cut(s) 61, 170
MboII GAAGA 8 cut(s) 104, 164, 180, 196, 199, 202, 205, 217
MluCI AATT 1 cut(s) 209
Mly113I GGCGCC 1 cut(s) 355
MlyI GAGTC 1 cut(s) 342
MnlI CCTC 3 cut(s) 75, 406, 459
Mph1103I ATGCAT 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 74
MseI TTAA 2 cut(s) 243, 375
MspI CCGG 5 cut(s) 314, 327, 352, 366, 441
MspR9I CCNGG 1 cut(s) 367
NarI GGCGCC 1 cut(s) 355
NciI CCSGG 1 cut(s) 367
NcoI CCATGG 1 cut(s) 221
NdeII GATC 2 cut(s) 61, 170
NlaIII CATG 3 cut(s) 17, 204, 225
NlaIV GGNNCC 3 cut(s) 325, 356, 417
NsiI ATGCAT 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 1 cut(s) 50
PleI GAGTC 1 cut(s) 342
PluTI GGCGCC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 342
PspN4I GGNNCC 3 cut(s) 325, 356, 417
PspPI GGNCC 3 cut(s) 311, 368, 470
RsaI GTAC 1 cut(s) 417
RsaNI GTAC 1 cut(s) 416
SaqAI TTAA 2 cut(s) 243, 375
SatI GCNGC 1 cut(s) 49
Sau3AI GATC 2 cut(s) 61, 170
Sau96I GGNCC 3 cut(s) 311, 368, 470
SchI GAGTC 1 cut(s) 342
ScrFI CCNGG 1 cut(s) 367
SetI ASST 3 cut(s) 243, 417, 467
SfaNI GCATC 1 cut(s) 277
SfoI GGCGCC 1 cut(s) 356
SinI GGWCC 1 cut(s) 311
SmlI CTYRAG 2 cut(s) 276, 450
SmoI CTYRAG 2 cut(s) 276, 450
Sse9I AATT 1 cut(s) 209
SspDI GGCGCC 1 cut(s) 354
SspMI CTAG 4 cut(s) 149, 252, 431, 482
StyD4I CCNGG 1 cut(s) 365
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 380
TaiI ACGT 1 cut(s) 467
TaqI TCGA 1 cut(s) 55
TasI AATT 1 cut(s) 209
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 2 cut(s) 243, 375
Tru9I TTAA 2 cut(s) 243, 375
TseI GCWGC 1 cut(s) 48
TspDTI ATGAA 1 cut(s) 8
TspGWI ACGGA 1 cut(s) 310
VpaK11BI GGWCC 1 cut(s) 311
XbaI TCTAGA 2 cut(s) 148, 430
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 4 cut(s) 149, 252, 431, 482
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.