Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010586

Physical Location & Seq

Genomic Coordinates Reverse (-)

20718225 .. 20719729

Gene Structure 1505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00099160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAAGAAATCTCCTGTTCATCCAAAATATGAGATGGGATTTGATGGCAGCAATCGATTTGATCCCCAGAATGACTTTTATGAGTTTTTGGAAGAAGCAAAACAATATGCATTAGAATCAGACTTTCAGACATCATCAACTTCCTATCCAGAAGAAACTGGAGAAAGAAGATCAGGGCAAGAGAAGAAGAAGAAATCATGGAAGAAATTACTATTTCCATGGTTGAAAGGCGAGAAGGTGAACAAAACTAGCACAAAATCAGCAACCAAATCTCAAGTATCTGATGCAAGACGGACTAATGTTTCTGGTCCGGTATTTGGCACCGGCAAGGCTATGGATGGCAGGGCTATGGATGGCAGGCTCCGGCGCCCCTTATCTGGGCCTATTAACAGTCTGTTCAGACCAACAATAAGAGCAGATAGTGAGGTACCCTATAAGTGTCTAGACAAGTCCGGCAGCCCTCAAGTTGTTCAAACATATGGCCCTGTTTATCTGGTGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.91

Weight (kDa)

9.68

Isoelectric Point (pI)

50.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010586)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35970
malus_domestica	MD09G1172200.v1.1 MD17G1154700.v1.1
prunus_persica	Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1
pyrus_communis	pycom09g08980 pycom17g14750
rosa_chinensis	RchiOBHm_Chr2g0148091
rosa_laevigata	RLG00000020312
rosa_multiflora	Rmu_sc0002002.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099160
rosa_rugosa	Rorug02G0403500 Rorug02G0403500
rosa_samantha	Rh2AG461200 Rh2BG475000 Rh2CG448300 Rh2DG483600
rosa_wichuraiana	Rw2G037650 Rw5G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	427
AccB1I	GGYRCC	3 cut(s)	320, 366, 427
AclWI	GGATC	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	367
AfaI	GTAC	1 cut(s)	429
AfiI	CCNNNNNNNGG	3 cut(s)	317, 377, 378
AgsI	TTSAA	2 cut(s)	226, 473
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	2 cut(s)	380, 481
ApeKI	GCWGC	2 cut(s)	48, 456
Asp718I	GGTACC	1 cut(s)	427
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	3 cut(s)	308, 380, 482
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	308
BanI	GGYRCC	3 cut(s)	320, 366, 427
BbvI	GCAGC	2 cut(s)	60, 468
BccI	CCATC	4 cut(s)	28, 38, 332, 347
BfaI	CTAG	2 cut(s)	249, 443
BfoI	RGCGCY	1 cut(s)	370
BisI	GCNGC	2 cut(s)	49, 457
BlsI	GCNGC	2 cut(s)	50, 458
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	3 cut(s)	308, 380, 482
BmiI	GGNNCC	4 cut(s)	322, 362, 368, 429
BmsI	GCATC	1 cut(s)	274
BpmI	CTGGAG	1 cut(s)	180
BpuEI	CTTGAG	2 cut(s)	258, 447
Bsa29I	ATCGAT	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	218
BsaWI	WCCGGW	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	3 cut(s)	317, 377, 378
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	1 cut(s)	163
BseCI	ATCGAT	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	218
BseGI	GGATG	3 cut(s)	19, 343, 358
BseLI	CCNNNNNNNGG	3 cut(s)	317, 377, 378
BseNI	ACTGG	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	60, 468
BshFI	GGCC	2 cut(s)	382, 483
BshNI	GGYRCC	3 cut(s)	320, 366, 427
BshVI	ATCGAT	1 cut(s)	55
BsiSI	CCGG	4 cut(s)	311, 324, 364, 453
BslI	CCNNNNNNNGG	3 cut(s)	317, 377, 378
BsnI	GGCC	2 cut(s)	382, 483
Bsp143I	GATC	2 cut(s)	61, 170
Bsp19I	CCATGG	1 cut(s)	218
BspANI	GGCC	2 cut(s)	382, 483
BspDI	ATCGAT	1 cut(s)	55
BspLI	GGNNCC	4 cut(s)	322, 362, 368, 429
BspPI	GGATC	1 cut(s)	56
BspT107I	GGYRCC	3 cut(s)	320, 366, 427
BsrFI	RCCGGY	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	2 cut(s)	61, 170
BssNI	GRCGYC	1 cut(s)	367
BssT1I	CCWWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	392
BstACI	GRCGYC	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	359
BstDSI	CCRYGG	1 cut(s)	218
BstF5I	GGATG	3 cut(s)	19, 343, 358
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	2 cut(s)	64, 173
BstMBI	GATC	2 cut(s)	61, 170
BstV1I	GCAGC	2 cut(s)	60, 468
Bsu15I	ATCGAT	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	382, 483
BsuTUI	ATCGAT	1 cut(s)	55
BtgI	CCRYGG	1 cut(s)	218
BtsCI	GGATG	3 cut(s)	19, 343, 358
Cac8I	GCNNGC	1 cut(s)	359
CfoI	GCGC	1 cut(s)	369
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	3 cut(s)	308, 380, 482
ClaI	ATCGAT	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	428
CviAII	CATG	2 cut(s)	198, 219
CviJI	RGCY	6 cut(s)	332, 347, 361, 382, 459, 483
CviKI_1	RGCY	6 cut(s)	332, 347, 361, 382, 459, 483
CviQI	GTAC	1 cut(s)	428
DinI	GGCGCC	1 cut(s)	368
DpnI	GATC	2 cut(s)	63, 172
DpnII	GATC	2 cut(s)	61, 170
Eco130I	CCWWGG	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	218
EcoT22I	ATGCAT	1 cut(s)	112
EgeI	GGCGCC	1 cut(s)	368
EheI	GGCGCC	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	2 cut(s)	201, 222
FatI	CATG	2 cut(s)	197, 218
FauNDI	CATATG	1 cut(s)	478
Fnu4HI	GCNGC	2 cut(s)	49, 457
FokI	GGATG	3 cut(s)	6, 350, 365
Fsp4HI	GCNGC	2 cut(s)	49, 457
FspBI	CTAG	2 cut(s)	249, 443
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	2 cut(s)	49, 457
GsuI	CTGGAG	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	370
HaeIII	GGCC	2 cut(s)	382, 483
HapII	CCGG	4 cut(s)	311, 324, 364, 453
HhaI	GCGC	1 cut(s)	369
Hin1I	GRCGYC	1 cut(s)	367
Hin1II	CATG	2 cut(s)	201, 222
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	4 cut(s)	311, 324, 364, 453
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	4 cut(s)	121, 129, 283, 401
Hpy188III	TCNNGA	2 cut(s)	149, 443
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4V	TGCA	2 cut(s)	110, 287
Hsp92I	GRCGYC	1 cut(s)	367
Hsp92II	CATG	2 cut(s)	201, 222
HspAI	GCGC	1 cut(s)	367
KasI	GGCGCC	1 cut(s)	366
KpnI	GGTACC	1 cut(s)	431
Kzo9I	GATC	2 cut(s)	61, 170
LmnI	GCTCC	1 cut(s)	366
Lsp1109I	GCAGC	2 cut(s)	60, 468
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	2 cut(s)	249, 443
MalI	GATC	2 cut(s)	63, 172
MboI	GATC	2 cut(s)	61, 170
MboII	GAAGA	8 cut(s)	16, 104, 164, 180, 196, 199, 202, 214
MluCI	AATT	1 cut(s)	206
Mly113I	GGCGCC	1 cut(s)	367
MnlI	CCTC	2 cut(s)	418, 471
Mph1103I	ATGCAT	1 cut(s)	112
MseI	TTAA	1 cut(s)	387
MspI	CCGG	4 cut(s)	311, 324, 364, 453
NarI	GGCGCC	1 cut(s)	367
NcoI	CCATGG	1 cut(s)	218
NdeI	CATATG	1 cut(s)	478
NdeII	GATC	2 cut(s)	61, 170
NlaIII	CATG	2 cut(s)	201, 222
NlaIV	GGNNCC	4 cut(s)	322, 362, 368, 429
NsiI	ATGCAT	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	50, 458
PluTI	GGCGCC	1 cut(s)	370
PspN4I	GGNNCC	4 cut(s)	322, 362, 368, 429
PspPI	GGNCC	3 cut(s)	308, 380, 482
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	2 cut(s)	49, 457
Sau3AI	GATC	2 cut(s)	61, 170
Sau96I	GGNCC	3 cut(s)	308, 380, 482
SetI	ASST	2 cut(s)	240, 429
SfaNI	GCATC	1 cut(s)	274
SfoI	GGCGCC	1 cut(s)	368
SinI	GGWCC	1 cut(s)	308
SmlI	CTYRAG	2 cut(s)	273, 462
SmoI	CTYRAG	2 cut(s)	273, 462
Sse9I	AATT	1 cut(s)	206
SspDI	GGCGCC	1 cut(s)	366
SspMI	CTAG	2 cut(s)	249, 443
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	392
TaqI	TCGA	1 cut(s)	55
TasI	AATT	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TseI	GCWGC	2 cut(s)	48, 456
TspDTI	ATGAA	2 cut(s)	8, 17
TspGWI	ACGGA	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	308
XbaI	TCTAGA	1 cut(s)	442
XspI	CTAG	2 cut(s)	249, 443
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.