Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010586

Physical Location & Seq

Genomic Coordinates Forward (+)

14748604 .. 14750028

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1154700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGATCATGATCACAGCAATGGATTCGATCCTCATACCGACTTTTATCAGTTTTTGGAAGAAGCCAAACACAATGTAGTAGAAGGAGACTTCCAGGCACCATCAGAAGAAGGTGCAGAGAGAAGATTGGGACAAGAGAAGAAGAAGAAATCATGGAAAAAGTTTCTATTTCCGTGGTTGAAAGGAGAGAAACTGAACAAAACTACTACAAAACCAGCAACCGTATCTCATATTTCTAATGCGAAGCGGACTAATGTTTCCGGTCCGGTGTATGGCACCGGCAAGGCTACGGATGGTAAGCACCGGGGTCCAATGTCGGGGCCTATTGCCAGTCTCTTCAACCCCACAAAGAGAGAAGACAATGCAATGCCTTATATGTGCCTTGACAAGAATGGCAGCCCTCAAGTTGGAAAAACTTATGGGCCAGTTTATTTGGTGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.41

Weight (kDa)

9.26

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010586)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35970
malus_domestica	MD09G1172200.v1.1 MD17G1154700.v1.1
prunus_persica	Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1
pyrus_communis	pycom09g08980 pycom17g14750
rosa_chinensis	RchiOBHm_Chr2g0148091
rosa_laevigata	RLG00000020312
rosa_multiflora	Rmu_sc0002002.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099160
rosa_rugosa	Rorug02G0403500 Rorug02G0403500
rosa_samantha	Rh2AG461200 Rh2BG475000 Rh2CG448300 Rh2DG483600
rosa_wichuraiana	Rw2G037650 Rw5G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	97, 275
AciI	CCGC	1 cut(s)	247
AclWI	GGATC	2 cut(s)	12, 23
AfiI	CCNNNNNNNGG	3 cut(s)	272, 317, 407
AgsI	TTSAA	2 cut(s)	181, 340
AjnI	CCWGG	1 cut(s)	93
Alw26I	GTCTC	2 cut(s)	81, 338
AlwI	GGATC	2 cut(s)	12, 23
AoxI	GGCC	2 cut(s)	320, 422
ApeKI	GCWGC	1 cut(s)	396
AspS9I	GGNCC	4 cut(s)	263, 308, 320, 422
AsuC2I	CCSGG	1 cut(s)	305
AvaII	GGWCC	2 cut(s)	263, 308
BanI	GGYRCC	2 cut(s)	97, 275
BbsI	GAAGAC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	408
BccI	CCATC	2 cut(s)	109, 287
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	1 cut(s)	95
BclI	TGATCA	1 cut(s)	10
BcnI	CCSGG	1 cut(s)	305
BcoDI	GTCTC	2 cut(s)	81, 338
BisI	GCNGC	1 cut(s)	397
BlsI	GCNGC	1 cut(s)	398
Bme1390I	CCNGG	2 cut(s)	95, 305
Bme18I	GGWCC	2 cut(s)	263, 308
BmgT120I	GGNCC	4 cut(s)	263, 308, 320, 422
BmiI	GGNNCC	4 cut(s)	99, 277, 309, 321
BmrFI	CCNGG	2 cut(s)	95, 305
BpiI	GAAGAC	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	387
BpuMI	CCSGG	1 cut(s)	305
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	173, 304
BsaWI	WCCGGW	2 cut(s)	260, 265
Bsc4I	CCNNNNNNNGG	3 cut(s)	272, 317, 407
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	2 cut(s)	330, 425
Bse3DI	GCAATG	2 cut(s)	25, 372
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	2 cut(s)	173, 304
BseGI	GGATG	1 cut(s)	298
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	3 cut(s)	272, 317, 407
BseMI	GCAATG	2 cut(s)	25, 372
BseNI	ACTGG	2 cut(s)	330, 425
BseXI	GCAGC	1 cut(s)	408
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	322, 424
BshNI	GGYRCC	2 cut(s)	97, 275
BsiSI	CCGG	4 cut(s)	261, 266, 279, 304
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	3 cut(s)	272, 317, 407
BsmAI	GTCTC	2 cut(s)	81, 338
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	2 cut(s)	322, 424
Bsp143I	GATC	3 cut(s)	4, 10, 28
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	2 cut(s)	322, 424
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	4 cut(s)	99, 277, 309, 321
BspPI	GGATC	2 cut(s)	12, 23
BspT107I	GGYRCC	2 cut(s)	97, 275
BsrDI	GCAATG	2 cut(s)	25, 372
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	330, 425
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	173, 304
BssMI	GATC	3 cut(s)	4, 10, 28
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	341
BstDSI	CCRYGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	3 cut(s)	7, 13, 31
BstMAI	GTCTC	2 cut(s)	81, 338
BstMBI	GATC	3 cut(s)	4, 10, 28
BstNI	CCWGG	1 cut(s)	95
BstSCI	CCNGG	2 cut(s)	93, 303
BstV1I	GCAGC	1 cut(s)	408
BstV2I	GAAGAC	1 cut(s)	363
BsuRI	GGCC	2 cut(s)	322, 424
BtgI	CCRYGG	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	298
CciI	TCATGA	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	4 cut(s)	263, 308, 320, 422
CpoI	CGGWCCG	1 cut(s)	263
CspI	CGGWCCG	1 cut(s)	263
CviAII	CATG	2 cut(s)	8, 153
CviJI	RGCY	5 cut(s)	65, 287, 322, 399, 424
CviKI_1	RGCY	5 cut(s)	65, 287, 322, 399, 424
DpnI	GATC	3 cut(s)	6, 12, 30
DpnII	GATC	3 cut(s)	4, 10, 28
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
Eco47I	GGWCC	2 cut(s)	263, 308
EcoO109I	RGGNCCY	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	93
FaeI	CATG	2 cut(s)	11, 156
FaiI	YATR	9 cut(s)	9, 36, 154, 231, 273, 375, 377, 420, 442
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	2 cut(s)	7, 152
FbaI	TGATCA	1 cut(s)	10
Fnu4HI	GCNGC	1 cut(s)	397
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	1 cut(s)	397
GluI	GCNGC	1 cut(s)	397
HaeIII	GGCC	2 cut(s)	322, 424
HapII	CCGG	4 cut(s)	261, 266, 279, 304
Hin1II	CATG	2 cut(s)	11, 156
HinfI	GANTC	1 cut(s)	24
HpaII	CCGG	4 cut(s)	261, 266, 279, 304
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	1 cut(s)	8
HpyAV	CCTTC	2 cut(s)	77, 104
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	2 cut(s)	116, 365
Hsp92II	CATG	2 cut(s)	11, 156
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	4, 10, 28
LpnPI	CCDG	9 cut(s)	80, 107, 228, 274, 279, 292, 317, 343, 438
Lsp1109I	GCAGC	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	3 cut(s)	6, 12, 30
MboI	GATC	3 cut(s)	4, 10, 28
MboII	GAAGA	8 cut(s)	71, 119, 135, 151, 154, 157, 328, 368
MmeI	TCCRAC	1 cut(s)	388
MnlI	CCTC	2 cut(s)	42, 411
MslI	CAYNNNNRTG	1 cut(s)	18
MspI	CCGG	4 cut(s)	261, 266, 279, 304
MspR9I	CCNGG	2 cut(s)	95, 305
MvaI	CCWGG	1 cut(s)	95
NciI	CCSGG	1 cut(s)	305
NdeII	GATC	3 cut(s)	4, 10, 28
NlaIII	CATG	2 cut(s)	11, 156
NlaIV	GGNNCC	4 cut(s)	99, 277, 309, 321
NmuCI	GTSAC	1 cut(s)	436
PagI	TCATGA	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	24
PkrI	GCNGC	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	4 cut(s)	99, 277, 309, 321
PspPI	GGNCC	4 cut(s)	263, 308, 320, 422
RseI	CAYNNNNRTG	1 cut(s)	18
Rsr2I	CGGWCCG	1 cut(s)	263
RsrII	CGGWCCG	1 cut(s)	263
SatI	GCNGC	1 cut(s)	397
Sau3AI	GATC	3 cut(s)	4, 10, 28
Sau96I	GGNCC	4 cut(s)	263, 308, 320, 422
ScrFI	CCNGG	2 cut(s)	95, 305
SetI	ASST	1 cut(s)	115
SinI	GGWCC	2 cut(s)	263, 308
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
SsiI	CCGC	1 cut(s)	247
StyD4I	CCNGG	2 cut(s)	93, 303
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	1 cut(s)	396
Tsp45I	GTSAC	1 cut(s)	436
TspGWI	ACGGA	2 cut(s)	162, 305
VpaK11BI	GGWCC	2 cut(s)	263, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.