Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010586

Physical Location & Seq

Genomic Coordinates Reverse (-)

2278186 .. 2280417

Gene Structure 2232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G030600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAAGAAATCTCCTGTGCACCCAAAGTATGACATGGAACATGAAGGCAATGGATTTGATCCTCAGGCTGACTTTTATCAGTTTCTGGAAGAAGCAAAACACTACGCAGTAGAGGCAGACTTCCAGAAATCATCAGGCTATCCAGGAGAAGGTGGAGAAAGAAGATTGGGCCAAGAGAAGAAGAAGAAATCATGGAAAAAGTTTCTATTTCCATGGTTGAAAGGAGATAAAATGAACAAAACTAGCATAAAACCAGAAACCATATCTCATGTTTCTAATACAAGGCGGACAAATGTTTCTGGTCCAGTGTATGGCACCGGCAAGGTTACGGATGGTAGGCACCGGCGTCCGACATCTGGGCCTATCGCCAGTCTTTTCAACCCCACAAAGAGATCAGACAATGCAATACCCTATGTGTGTCTTGACAACAATGGCAGCCCTCAAGTTGTTAAAACCTATGGGCCTGTTTATCTGGTGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

18.04

Weight (kDa)

9.58

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010586)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35970
malus_domestica	MD09G1172200.v1.1 MD17G1154700.v1.1
prunus_persica	Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1
pyrus_communis	pycom09g08980 pycom17g14750
rosa_chinensis	RchiOBHm_Chr2g0148091
rosa_laevigata	RLG00000020312
rosa_multiflora	Rmu_sc0002002.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099160
rosa_rugosa	Rorug02G0403500 Rorug02G0403500
rosa_samantha	Rh2AG461200 Rh2BG475000 Rh2CG448300 Rh2DG483600
rosa_wichuraiana	Rw2G037650 Rw5G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	314, 339
AccB7I	CCANNNNNTGG	1 cut(s)	311
AciI	CCGC	1 cut(s)	286
AclWI	GGATC	1 cut(s)	53
AcyI	GRCGYC	1 cut(s)	346
AfiI	CCNNNNNNNGG	3 cut(s)	149, 311, 356
AgsI	TTSAA	2 cut(s)	220, 379
AjnI	CCWGG	1 cut(s)	142
Alw21I	GWGCWC	1 cut(s)	21
Alw44I	GTGCAC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	53
AlwNI	CAGNNNCTG	1 cut(s)	85
AoxI	GGCC	3 cut(s)	169, 359, 461
ApaLI	GTGCAC	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	435
AspS9I	GGNCC	4 cut(s)	169, 302, 359, 461
AvaII	GGWCC	1 cut(s)	302
AxyI	CCTNAGG	1 cut(s)	63
BaeGI	GKGCMC	1 cut(s)	21
BanI	GGYRCC	2 cut(s)	314, 339
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	447
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	144
BfaI	CTAG	1 cut(s)	243
BisI	GCNGC	1 cut(s)	436
BlsI	GCNGC	1 cut(s)	437
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	4 cut(s)	169, 302, 359, 461
BmiI	GGNNCC	2 cut(s)	316, 341
BmrFI	CCNGG	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	426
BsaHI	GRCGYC	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 311, 356
Bse118I	RCCGGY	2 cut(s)	317, 342
Bse1I	ACTGG	2 cut(s)	305, 369
Bse21I	CCTNAGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	3 cut(s)	149, 311, 356
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	2 cut(s)	305, 369
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	447
BshFI	GGCC	3 cut(s)	171, 361, 463
BshNI	GGYRCC	2 cut(s)	314, 339
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	318, 343
BslI	CCNNNNNNNGG	3 cut(s)	149, 311, 356
BsnI	GGCC	3 cut(s)	171, 361, 463
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	58, 392
Bsp19I	CCATGG	1 cut(s)	212
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	3 cut(s)	171, 361, 463
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	316, 341
BspPI	GGATC	1 cut(s)	53
BspT107I	GGYRCC	2 cut(s)	314, 339
BsrDI	GCAATG	1 cut(s)	55
BsrFI	RCCGGY	2 cut(s)	317, 342
BsrI	ACTGG	2 cut(s)	305, 369
BssAI	RCCGGY	2 cut(s)	317, 342
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	2 cut(s)	58, 392
BssNI	GRCGYC	1 cut(s)	346
BssT1I	CCWWGG	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	144
BstACI	GRCGYC	1 cut(s)	346
BstDEI	CTNAG	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	2 cut(s)	61, 395
BstMBI	GATC	2 cut(s)	58, 392
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstSLI	GKGCMC	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	447
Bsu36I	CCTNAGG	1 cut(s)	63
BsuRI	GGCC	3 cut(s)	171, 361, 463
BtgI	CCRYGG	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	312
CaiI	CAGNNNCTG	1 cut(s)	85
Cfr10I	RCCGGY	2 cut(s)	317, 342
Cfr13I	GGNCC	4 cut(s)	169, 302, 359, 461
CseI	GACGC	1 cut(s)	335
CviAII	CATG	5 cut(s)	34, 41, 192, 213, 269
CviJI	RGCY	6 cut(s)	68, 138, 171, 361, 438, 463
CviKI_1	RGCY	6 cut(s)	68, 138, 171, 361, 438, 463
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	2 cut(s)	60, 394
DpnII	GATC	2 cut(s)	58, 392
EciI	GGCGGA	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	302
Eco81I	CCTNAGG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	5 cut(s)	37, 44, 195, 216, 272
FatI	CATG	5 cut(s)	33, 40, 191, 212, 268
Fnu4HI	GCNGC	1 cut(s)	436
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	1 cut(s)	436
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	1 cut(s)	436
HaeIII	GGCC	3 cut(s)	171, 361, 463
HapII	CCGG	2 cut(s)	318, 343
HgaI	GACGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	346
Hin1II	CATG	5 cut(s)	37, 44, 195, 216, 272
HpaII	CCGG	2 cut(s)	318, 343
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	351, 397
Hpy188III	TCNNGA	3 cut(s)	86, 124, 422
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	38, 143
HpyCH4V	TGCA	2 cut(s)	19, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	346
Hsp92II	CATG	5 cut(s)	37, 44, 195, 216, 272
Kzo9I	GATC	2 cut(s)	58, 392
Lsp1109I	GCAGC	1 cut(s)	447
MaeI	CTAG	1 cut(s)	243
MaeIII	GTNAC	2 cut(s)	325, 475
MalI	GATC	2 cut(s)	60, 394
MboI	GATC	2 cut(s)	58, 392
MboII	GAAGA	6 cut(s)	16, 101, 174, 190, 193, 196
MhlI	GDGCHC	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	374
MnlI	CCTC	3 cut(s)	72, 106, 450
MseI	TTAA	1 cut(s)	450
MspI	CCGG	2 cut(s)	318, 343
MspR9I	CCNGG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	212
NdeII	GATC	2 cut(s)	58, 392
NlaIII	CATG	5 cut(s)	37, 44, 195, 216, 272
NlaIV	GGNNCC	2 cut(s)	316, 341
NmuCI	GTSAC	1 cut(s)	475
PflMI	CCANNNNNTGG	1 cut(s)	311
PfoI	TCCNGGA	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	316, 341
PspPI	GGNCC	4 cut(s)	169, 302, 359, 461
PstNI	CAGNNNCTG	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	1 cut(s)	436
Sau3AI	GATC	2 cut(s)	58, 392
Sau96I	GGNCC	4 cut(s)	169, 302, 359, 461
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	3 cut(s)	154, 327, 458
SgrAI	CRCCGGYG	1 cut(s)	342
SinI	GGWCC	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	441
SmoI	CTYRAG	1 cut(s)	441
SsiI	CCGC	1 cut(s)	286
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	212
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	1 cut(s)	435
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	3 cut(s)	17, 57, 248
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	1 cut(s)	312
Van91I	CCANNNNNTGG	1 cut(s)	311
VneI	GTGCAC	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	302
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.