Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010586

Physical Location & Seq

Genomic Coordinates Reverse (-)

7087118 .. 7087766

Gene Structure 649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g08980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGATCATGATCATAGCAATGGATTTGATCCTCATACCGACTTTTATCAGTTTTTGGAAGAAGCCAAACACTATTCAGTAGAGGGAGACGTCCAGGCATCATCAGAAGAAGGTGGAGAGAGAAGATTGGGACAAGAAAAGAAGAAGAAATCATGGAAAAAGTTACTATTTCCATGGTTGAAAGGAGAGAAACTGAACAAAACTACTACAAAACCAGCAAGCACATCTCATGTTTCTAATACGAAGAGGACTAATGTTTCCGGTCCGGTGTATGGCACCGGCAAGGCTACCGATGGCAAGCACCGGCGTCAAATGTCGGGCCCTATTGCCAGTCTTTTCAACCCCACAAAGACAGCAGACAATGCAATGCCTTATATGTGCATCAACAAGAATGGAAGCCCTCAAGTTGGAAAAACTTATGGGCCAGTCTATTTGGTGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

16.36

Weight (kDa)

9.47

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010586)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35970
malus_domestica	MD09G1172200.v1.1 MD17G1154700.v1.1
prunus_persica	Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1
pyrus_communis	pycom09g08980 pycom17g14750
rosa_chinensis	RchiOBHm_Chr2g0148091
rosa_laevigata	RLG00000020312
rosa_multiflora	Rmu_sc0002002.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099160
rosa_rugosa	Rorug02G0403500 Rorug02G0403500
rosa_samantha	Rh2AG461200 Rh2BG475000 Rh2CG448300 Rh2DG483600
rosa_wichuraiana	Rw2G037650 Rw5G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	275
AclWI	GGATC	2 cut(s)	12, 23
AcyI	GRCGYC	2 cut(s)	90, 307
AfiI	CCNNNNNNNGG	2 cut(s)	272, 407
AgsI	TTSAA	2 cut(s)	181, 340
AjnI	CCWGG	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	2 cut(s)	12, 23
AoxI	GGCC	2 cut(s)	319, 422
ApaI	GGGCCC	1 cut(s)	323
AspS9I	GGNCC	4 cut(s)	263, 319, 320, 422
AvaII	GGWCC	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	323
BccI	CCATC	1 cut(s)	287
BciT130I	CCWGG	1 cut(s)	95
BclI	TGATCA	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	81
Bme1390I	CCNGG	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	4 cut(s)	263, 319, 320, 422
BmiI	GGNNCC	2 cut(s)	277, 321
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	2 cut(s)	107, 390
BpuEI	CTTGAG	1 cut(s)	387
BsaBI	GATNNNNATC	1 cut(s)	9
BsaHI	GRCGYC	2 cut(s)	90, 307
BsaJI	CCNNGG	1 cut(s)	173
BsaWI	WCCGGW	2 cut(s)	260, 265
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 407
Bse118I	RCCGGY	2 cut(s)	278, 303
Bse1I	ACTGG	2 cut(s)	330, 425
Bse3DI	GCAATG	2 cut(s)	25, 372
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	173
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	2 cut(s)	272, 407
BseMI	GCAATG	2 cut(s)	25, 372
BseNI	ACTGG	2 cut(s)	330, 425
BseSI	GKGCMC	1 cut(s)	323
BshFI	GGCC	2 cut(s)	321, 424
BshNI	GGYRCC	1 cut(s)	275
BsiSI	CCGG	4 cut(s)	261, 266, 279, 304
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	2 cut(s)	272, 407
BsmAI	GTCTC	1 cut(s)	81
BsmBI	CGTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	2 cut(s)	321, 424
Bsp120I	GGGCCC	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	3 cut(s)	4, 10, 28
Bsp19I	CCATGG	1 cut(s)	173
BspANI	GGCC	2 cut(s)	321, 424
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	277, 321
BspPI	GGATC	2 cut(s)	12, 23
BspT107I	GGYRCC	1 cut(s)	275
BsrDI	GCAATG	2 cut(s)	25, 372
BsrFI	RCCGGY	2 cut(s)	278, 303
BsrI	ACTGG	2 cut(s)	330, 425
BssAI	RCCGGY	2 cut(s)	278, 303
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	3 cut(s)	4, 10, 28
BssNI	GRCGYC	2 cut(s)	90, 307
BssT1I	CCWWGG	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	95
Bst6I	CTCTTC	1 cut(s)	239
BstACI	GRCGYC	2 cut(s)	90, 307
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	220, 299
BstDSI	CCRYGG	1 cut(s)	173
BstKTI	GATC	3 cut(s)	7, 13, 31
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	3 cut(s)	4, 10, 28
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	323
BsuRI	GGCC	2 cut(s)	321, 424
BtgI	CCRYGG	1 cut(s)	173
Cac8I	GCNNGC	2 cut(s)	220, 299
CciI	TCATGA	1 cut(s)	7
Cfr10I	RCCGGY	2 cut(s)	278, 303
Cfr13I	GGNCC	4 cut(s)	263, 319, 320, 422
CpoI	CGGWCCG	1 cut(s)	263
CseI	GACGC	1 cut(s)	296
CspI	CGGWCCG	1 cut(s)	263
CviAII	CATG	4 cut(s)	8, 153, 174, 230
CviJI	RGCY	5 cut(s)	65, 287, 321, 399, 424
CviKI_1	RGCY	5 cut(s)	65, 287, 321, 399, 424
DpnI	GATC	3 cut(s)	6, 12, 30
DpnII	GATC	3 cut(s)	4, 10, 28
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	263
EcoO109I	RGGNCCY	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	173
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	4 cut(s)	11, 156, 177, 233
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	4 cut(s)	7, 152, 173, 229
FbaI	TGATCA	1 cut(s)	10
FriOI	GRGCYC	1 cut(s)	323
HaeIII	GGCC	2 cut(s)	321, 424
HapII	CCGG	4 cut(s)	261, 266, 279, 304
HgaI	GACGC	1 cut(s)	296
Hin1I	GRCGYC	2 cut(s)	90, 307
Hin1II	CATG	4 cut(s)	11, 156, 177, 233
HpaII	CCGG	4 cut(s)	261, 266, 279, 304
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	2 cut(s)	365, 381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	2 cut(s)	90, 307
Hsp92II	CATG	4 cut(s)	11, 156, 177, 233
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	4, 10, 28
LpnPI	CCDG	9 cut(s)	80, 107, 228, 274, 279, 292, 317, 343, 438
LweI	GCATC	2 cut(s)	107, 390
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	162, 436
MalI	GATC	3 cut(s)	6, 12, 30
MboI	GATC	3 cut(s)	4, 10, 28
MboII	GAAGA	6 cut(s)	71, 119, 135, 154, 157, 256
MhlI	GDGCHC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	388
MnlI	CCTC	4 cut(s)	42, 76, 240, 411
MslI	CAYNNNNRTG	1 cut(s)	18
MspI	CCGG	4 cut(s)	261, 266, 279, 304
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	362
NcoI	CCATGG	1 cut(s)	173
NdeII	GATC	3 cut(s)	4, 10, 28
NlaIII	CATG	4 cut(s)	11, 156, 177, 233
NlaIV	GGNNCC	2 cut(s)	277, 321
NmuCI	GTSAC	1 cut(s)	436
PagI	TCATGA	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	277, 321
PspOMI	GGGCCC	1 cut(s)	319
PspPI	GGNCC	4 cut(s)	263, 319, 320, 422
RseI	CAYNNNNRTG	1 cut(s)	18
Rsr2I	CGGWCCG	1 cut(s)	263
RsrII	CGGWCCG	1 cut(s)	263
Sau3AI	GATC	3 cut(s)	4, 10, 28
Sau96I	GGNCC	4 cut(s)	263, 319, 320, 422
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	2 cut(s)	93, 115
SfaNI	GCATC	2 cut(s)	107, 390
SgrAI	CRCCGGYG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	173
TaiI	ACGT	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	436
Tsp45I	GTSAC	1 cut(s)	436
VpaK11BI	GGWCC	1 cut(s)	263
ZraI	GACGTC	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.