Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010586

Physical Location & Seq

Genomic Coordinates Forward (+)

65744872 .. 65746308

Gene Structure 1437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51767

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCAGAAATCTCCTGTTCATCCAAAATATGAGATGGGGTTTGATGGCAGCAATCGATTTGATCCTCAGAATGACTTCTATGAGTTTTTGGAAGAAGCAAAACACTATGCATTAGAATCAGACTTTCAGACATCATCAACTTCCTATCCAGAAGAAACTGGAGAAAGAAGATCAGGGCAAGAGAAGAAGAAGAAGAAATCATGGAAGAAATTACTATTTCCATGGTTGAAAGGCGAGAAGGTAAACAAAACTAGCACAAAATCAGCAACCAAATCTCAAGTATCTGATGCAAGACGGACTAACGTTTCTGGTCCGGTATTTGGCACCGGCAAGGCTATGGATGGCAGGCTCCGGCACCCCTTATCCGGGCCTATTAACAGTCTGTTCAGACCAACAATAAGAGCAGATAGTGAGGTACCCTATAAGTGTCTAGACAAGTCCGGCAGCCCTCAAGTTGTTCAAACATATGGCCCTGTTTATCTAGTGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

18.5

Weight (kDa)

9.6

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010586)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35970
malus_domestica	MD09G1172200.v1.1 MD17G1154700.v1.1
prunus_persica	Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1
pyrus_communis	pycom09g08980 pycom17g14750
rosa_chinensis	RchiOBHm_Chr2g0148091
rosa_laevigata	RLG00000020312
rosa_multiflora	Rmu_sc0002002.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099160
rosa_rugosa	Rorug02G0403500 Rorug02G0403500
rosa_samantha	Rh2AG461200 Rh2BG475000 Rh2CG448300 Rh2DG483600
rosa_wichuraiana	Rw2G037650 Rw5G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	415
AccB1I	GGYRCC	3 cut(s)	323, 354, 415
AclI	AACGTT	1 cut(s)	303
AclWI	GGATC	1 cut(s)	56
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	3 cut(s)	320, 365, 366
AgsI	TTSAA	2 cut(s)	229, 461
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	2 cut(s)	368, 469
ApeKI	GCWGC	2 cut(s)	48, 444
Asp700I	GAANNNNTTC	1 cut(s)	74
Asp718I	GGTACC	1 cut(s)	415
AspS9I	GGNCC	3 cut(s)	311, 368, 470
AsuC2I	CCSGG	1 cut(s)	367
AvaII	GGWCC	1 cut(s)	311
BanI	GGYRCC	3 cut(s)	323, 354, 415
BbvI	GCAGC	2 cut(s)	60, 456
BccI	CCATC	3 cut(s)	28, 38, 335
BcnI	CCSGG	1 cut(s)	367
BfaI	CTAG	3 cut(s)	252, 431, 482
BisI	GCNGC	2 cut(s)	49, 445
BlsI	GCNGC	2 cut(s)	50, 446
Bme1390I	CCNGG	1 cut(s)	367
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	3 cut(s)	311, 368, 470
BmiI	GGNNCC	4 cut(s)	325, 350, 356, 417
BmrFI	CCNGG	1 cut(s)	367
BmsI	GCATC	1 cut(s)	277
BpmI	CTGGAG	1 cut(s)	180
BpuEI	CTTGAG	2 cut(s)	261, 435
BpuMI	CCSGG	1 cut(s)	367
Bsa29I	ATCGAT	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	3 cut(s)	320, 365, 366
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	163
BseCI	ATCGAT	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	2 cut(s)	19, 346
BseLI	CCNNNNNNNGG	3 cut(s)	320, 365, 366
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	60, 456
BshFI	GGCC	2 cut(s)	370, 471
BshNI	GGYRCC	3 cut(s)	323, 354, 415
BshVI	ATCGAT	1 cut(s)	55
BsiSI	CCGG	5 cut(s)	314, 327, 352, 366, 441
BslI	CCNNNNNNNGG	3 cut(s)	320, 365, 366
BsnI	GGCC	2 cut(s)	370, 471
Bsp143I	GATC	2 cut(s)	61, 170
Bsp19I	CCATGG	1 cut(s)	221
BspANI	GGCC	2 cut(s)	370, 471
BspCNI	CTCAG	1 cut(s)	79
BspDI	ATCGAT	1 cut(s)	55
BspLI	GGNNCC	4 cut(s)	325, 350, 356, 417
BspPI	GGATC	1 cut(s)	56
BspT107I	GGYRCC	3 cut(s)	323, 354, 415
BsrFI	RCCGGY	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	2 cut(s)	61, 170
BssT1I	CCWWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	380
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	66
BstDSI	CCRYGG	1 cut(s)	221
BstF5I	GGATG	2 cut(s)	19, 346
BstKTI	GATC	2 cut(s)	64, 173
BstMBI	GATC	2 cut(s)	61, 170
BstSCI	CCNGG	1 cut(s)	365
BstV1I	GCAGC	2 cut(s)	60, 456
Bsu15I	ATCGAT	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	370, 471
BsuTUI	ATCGAT	1 cut(s)	55
BtgI	CCRYGG	1 cut(s)	221
BtsCI	GGATG	2 cut(s)	19, 346
Cac8I	GCNNGC	1 cut(s)	347
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	3 cut(s)	311, 368, 470
ClaI	ATCGAT	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	2 cut(s)	201, 222
CviJI	RGCY	5 cut(s)	335, 349, 370, 447, 471
CviKI_1	RGCY	5 cut(s)	335, 349, 370, 447, 471
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	2 cut(s)	63, 172
DpnII	GATC	2 cut(s)	61, 170
Eco130I	CCWWGG	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	221
EcoT22I	ATGCAT	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	221
FaeI	CATG	2 cut(s)	204, 225
FaiI	YATR	9 cut(s)	30, 81, 108, 202, 223, 338, 423, 466, 468
FatI	CATG	2 cut(s)	200, 221
FauNDI	CATATG	1 cut(s)	466
Fnu4HI	GCNGC	2 cut(s)	49, 445
FokI	GGATG	2 cut(s)	6, 353
Fsp4HI	GCNGC	2 cut(s)	49, 445
FspBI	CTAG	3 cut(s)	252, 431, 482
GluI	GCNGC	2 cut(s)	49, 445
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	370, 471
HapII	CCGG	5 cut(s)	314, 327, 352, 366, 441
Hin1II	CATG	2 cut(s)	204, 225
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	5 cut(s)	314, 327, 352, 366, 441
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	5 cut(s)	69, 121, 129, 286, 389
Hpy188III	TCNNGA	2 cut(s)	149, 431
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	3 cut(s)	4, 110, 290
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	204, 225
KpnI	GGTACC	1 cut(s)	419
Kzo9I	GATC	2 cut(s)	61, 170
LmnI	GCTCC	1 cut(s)	354
Lsp1109I	GCAGC	2 cut(s)	60, 456
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	3 cut(s)	252, 431, 482
MaeII	ACGT	1 cut(s)	303
MalI	GATC	2 cut(s)	63, 172
MboI	GATC	2 cut(s)	61, 170
MboII	GAAGA	8 cut(s)	104, 164, 180, 196, 199, 202, 205, 217
MluCI	AATT	1 cut(s)	209
MnlI	CCTC	3 cut(s)	75, 406, 459
Mph1103I	ATGCAT	1 cut(s)	112
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	1 cut(s)	375
MspI	CCGG	5 cut(s)	314, 327, 352, 366, 441
MspR9I	CCNGG	1 cut(s)	367
NciI	CCSGG	1 cut(s)	367
NcoI	CCATGG	1 cut(s)	221
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	2 cut(s)	61, 170
NlaIII	CATG	2 cut(s)	204, 225
NlaIV	GGNNCC	4 cut(s)	325, 350, 356, 417
NsiI	ATGCAT	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	50, 446
Psp1406I	AACGTT	1 cut(s)	303
PspN4I	GGNNCC	4 cut(s)	325, 350, 356, 417
PspPI	GGNCC	3 cut(s)	311, 368, 470
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	2 cut(s)	49, 445
Sau3AI	GATC	2 cut(s)	61, 170
Sau96I	GGNCC	3 cut(s)	311, 368, 470
ScrFI	CCNGG	1 cut(s)	367
SetI	ASST	3 cut(s)	243, 306, 417
SfaNI	GCATC	1 cut(s)	277
SinI	GGWCC	1 cut(s)	311
SmlI	CTYRAG	2 cut(s)	276, 450
SmoI	CTYRAG	2 cut(s)	276, 450
Sse9I	AATT	1 cut(s)	209
SspMI	CTAG	3 cut(s)	252, 431, 482
StyD4I	CCNGG	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	1 cut(s)	55
TasI	AATT	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TseI	GCWGC	2 cut(s)	48, 444
TspDTI	ATGAA	1 cut(s)	8
TspGWI	ACGGA	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	311
XbaI	TCTAGA	1 cut(s)	430
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	3 cut(s)	252, 431, 482
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.