RLG00000020312

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010586
Physical Location & Seq
Forward (+)
63564773 .. 63566093
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020312

Sequence Viewer

Length: 606 bp
ATGAATGGAGGAAGACAGATTCACTACCTTTTCCCTCCTAAATCTTCACCAAAAGAAAGCTTCAAAGCCCCCTCCGCAACATGCGCCGCATTTGTCGCTCATTACAAAAGGCAAAGTATGAAGAAATCTCCTGTTCATCCAAAATATGAGATGGGATTTGATGGCAGCAATCGATTTGATCCCCAGAATGACTTTTATGAGTTTTTGGAAGAAGCAAAACAGTATGCATTAGAATCAGACTTTCAGACATCATCAACTTCCTATCTAGAAGAAACTGGAGAAAGAAGATCAGGGCAAGAGAAGAAGAAGAAATCATGGAAGAAATTACTATTTCCATGGTTGAAAGGCGAGAAGGTTAACAAAACTAGCACAAAATCAGCAACCAAATCTCAAGTATCTGATGCAAAACGGACTAATGTTTCTGGTCCGGTATTTGGCACCGGCAAGGCTATGGATGGCAGGCTCCAGCGCCCCTTATCCGGGCCTATTAACAGTCTGTTCAGACCAACAATAAGAGCAGATGGTGAGGTACCCTATAAGTGTCTAGACAAGTCCGGCAGCCCTCAAGTTGTTCAAAAATATGGCCCTGTTTATCTGGTGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.66

Weight (kDa)

9.77

Isoelectric Point (pI)

53.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 529
AccB1I GGYRCC 2 cut(s) 437, 529
AciI CCGC 2 cut(s) 75, 87
AclWI GGATC 1 cut(s) 173
AfaI GTAC 1 cut(s) 531
AfiI CCNNNNNNNGG 3 cut(s) 434, 479, 480
AgsI TTSAA 3 cut(s) 64, 343, 575
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
AlwI GGATC 1 cut(s) 173
AoxI GGCC 2 cut(s) 482, 583
ApeKI GCWGC 2 cut(s) 165, 558
Asp718I GGTACC 1 cut(s) 529
AspLEI GCGC 2 cut(s) 86, 471
AspS9I GGNCC 3 cut(s) 425, 482, 584
AsuC2I CCSGG 1 cut(s) 481
AsuHPI GGTGA 2 cut(s) 39, 536
AvaII GGWCC 1 cut(s) 425
BanI GGYRCC 2 cut(s) 437, 529
BbsI GAAGAC 1 cut(s) 19
BbvI GCAGC 2 cut(s) 177, 570
BccI CCATC 4 cut(s) 145, 155, 449, 515
BcnI CCSGG 1 cut(s) 481
BfaI CTAG 3 cut(s) 266, 366, 545
BfoI RGCGCY 1 cut(s) 472
BisI GCNGC 3 cut(s) 87, 166, 559
BlsI GCNGC 3 cut(s) 88, 167, 560
Bme1390I CCNGG 1 cut(s) 481
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 3 cut(s) 425, 482, 584
BmiI GGNNCC 3 cut(s) 439, 464, 531
BmrFI CCNGG 1 cut(s) 481
BmsI GCATC 1 cut(s) 391
BpiI GAAGAC 1 cut(s) 19
BpmI CTGGAG 2 cut(s) 297, 449
BpuEI CTTGAG 2 cut(s) 375, 549
BpuMI CCSGG 1 cut(s) 481
Bsa29I ATCGAT 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 335
BsaWI WCCGGW 1 cut(s) 427
Bsc4I CCNNNNNNNGG 3 cut(s) 434, 479, 480
Bse118I RCCGGY 1 cut(s) 440
Bse1I ACTGG 1 cut(s) 280
BseCI ATCGAT 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 335
BseGI GGATG 2 cut(s) 136, 460
BseLI CCNNNNNNNGG 3 cut(s) 434, 479, 480
BseNI ACTGG 1 cut(s) 280
BseXI GCAGC 2 cut(s) 177, 570
BshFI GGCC 2 cut(s) 484, 585
BshNI GGYRCC 2 cut(s) 437, 529
BshVI ATCGAT 1 cut(s) 172
BsiSI CCGG 4 cut(s) 428, 441, 480, 555
BslI CCNNNNNNNGG 3 cut(s) 434, 479, 480
BsnI GGCC 2 cut(s) 484, 585
Bsp143I GATC 2 cut(s) 178, 287
Bsp19I CCATGG 1 cut(s) 335
BspACI CCGC 2 cut(s) 75, 87
BspANI GGCC 2 cut(s) 484, 585
BspDI ATCGAT 1 cut(s) 172
BspLI GGNNCC 3 cut(s) 439, 464, 531
BspPI GGATC 1 cut(s) 173
BspT107I GGYRCC 2 cut(s) 437, 529
BsrFI RCCGGY 1 cut(s) 440
BsrI ACTGG 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 440
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 2 cut(s) 178, 287
BssT1I CCWWGG 1 cut(s) 335
Bst4CI ACNGT 2 cut(s) 222, 494
BstC8I GCNNGC 1 cut(s) 461
BstDSI CCRYGG 1 cut(s) 335
BstF5I GGATG 2 cut(s) 136, 460
BstH2I RGCGCY 1 cut(s) 472
BstHHI GCGC 2 cut(s) 86, 471
BstKTI GATC 2 cut(s) 181, 290
BstMBI GATC 2 cut(s) 178, 287
BstMWI GCNNNNNNNGC 3 cut(s) 74, 83, 95
BstNSI RCATGY 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 479
BstV1I GCAGC 2 cut(s) 177, 570
BstV2I GAAGAC 1 cut(s) 19
Bsu15I ATCGAT 1 cut(s) 172
BsuRI GGCC 2 cut(s) 484, 585
BsuTUI ATCGAT 1 cut(s) 172
BtgI CCRYGG 1 cut(s) 335
BtsCI GGATG 2 cut(s) 136, 460
Cac8I GCNNGC 1 cut(s) 461
CfoI GCGC 2 cut(s) 86, 471
Cfr10I RCCGGY 1 cut(s) 440
Cfr13I GGNCC 3 cut(s) 425, 482, 584
ClaI ATCGAT 1 cut(s) 172
Csp6I GTAC 1 cut(s) 530
CviAII CATG 3 cut(s) 81, 315, 336
CviJI RGCY 7 cut(s) 60, 68, 449, 463, 484, 561, 585
CviKI_1 RGCY 7 cut(s) 60, 68, 449, 463, 484, 561, 585
CviQI GTAC 1 cut(s) 530
DpnI GATC 2 cut(s) 180, 289
DpnII GATC 2 cut(s) 178, 287
Eco130I CCWWGG 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 425
EcoT14I CCWWGG 1 cut(s) 335
EcoT22I ATGCAT 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 335
FaeI CATG 3 cut(s) 84, 318, 339
FatI CATG 3 cut(s) 80, 314, 335
Fnu4HI GCNGC 3 cut(s) 87, 166, 559
FokI GGATG 2 cut(s) 123, 467
Fsp4HI GCNGC 3 cut(s) 87, 166, 559
FspBI CTAG 3 cut(s) 266, 366, 545
GlaI GCGC 2 cut(s) 85, 470
GluI GCNGC 3 cut(s) 87, 166, 559
GsuI CTGGAG 2 cut(s) 297, 449
HaeII RGCGCY 1 cut(s) 472
HaeIII GGCC 2 cut(s) 484, 585
HapII CCGG 4 cut(s) 428, 441, 480, 555
HhaI GCGC 2 cut(s) 86, 471
Hin1II CATG 3 cut(s) 84, 318, 339
Hin6I GCGC 2 cut(s) 84, 469
HinP1I GCGC 2 cut(s) 84, 469
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 2 cut(s) 19, 233
HpaI GTTAAC 1 cut(s) 358
HpaII CCGG 4 cut(s) 428, 441, 480, 555
HphI GGTGA 2 cut(s) 39, 536
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 4 cut(s) 238, 246, 400, 503
Hpy188III TCNNGA 2 cut(s) 266, 545
Hpy8I GTNNAC 1 cut(s) 358
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 2 cut(s) 222, 494
HpyCH4V TGCA 2 cut(s) 227, 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 83, 95
Hsp92II CATG 3 cut(s) 84, 318, 339
HspAI GCGC 2 cut(s) 84, 469
KpnI GGTACC 1 cut(s) 533
KspAI GTTAAC 1 cut(s) 358
Kzo9I GATC 2 cut(s) 178, 287
LmnI GCTCC 1 cut(s) 468
Lsp1109I GCAGC 2 cut(s) 177, 570
LweI GCATC 1 cut(s) 391
MaeI CTAG 3 cut(s) 266, 366, 545
MalI GATC 2 cut(s) 180, 289
MboI GATC 2 cut(s) 178, 287
MluCI AATT 1 cut(s) 323
MnlI CCTC 4 cut(s) 45, 82, 520, 573
Mph1103I ATGCAT 1 cut(s) 229
MseI TTAA 2 cut(s) 357, 489
MspI CCGG 4 cut(s) 428, 441, 480, 555
MspR9I CCNGG 1 cut(s) 481
MwoI GCNNNNNNNGC 3 cut(s) 74, 83, 95
NciI CCSGG 1 cut(s) 481
NcoI CCATGG 1 cut(s) 335
NdeII GATC 2 cut(s) 178, 287
NlaIII CATG 3 cut(s) 84, 318, 339
NlaIV GGNNCC 3 cut(s) 439, 464, 531
NsiI ATGCAT 1 cut(s) 229
NspI RCATGY 1 cut(s) 84
PfeI GAWTC 2 cut(s) 19, 233
PkrI GCNGC 3 cut(s) 88, 167, 560
PspN4I GGNNCC 3 cut(s) 439, 464, 531
PspPI GGNCC 3 cut(s) 425, 482, 584
RsaI GTAC 1 cut(s) 531
RsaNI GTAC 1 cut(s) 530
SaqAI TTAA 2 cut(s) 357, 489
SatI GCNGC 3 cut(s) 87, 166, 559
Sau3AI GATC 2 cut(s) 178, 287
Sau96I GGNCC 3 cut(s) 425, 482, 584
ScrFI CCNGG 1 cut(s) 481
SetI ASST 4 cut(s) 30, 62, 357, 531
SfaNI GCATC 1 cut(s) 391
SinI GGWCC 1 cut(s) 425
SmlI CTYRAG 2 cut(s) 390, 564
SmoI CTYRAG 2 cut(s) 390, 564
Sse9I AATT 1 cut(s) 323
SsiI CCGC 2 cut(s) 75, 87
SspMI CTAG 3 cut(s) 266, 366, 545
StyD4I CCNGG 1 cut(s) 479
StyI CCWWGG 1 cut(s) 335
TaaI ACNGT 2 cut(s) 222, 494
TaqI TCGA 1 cut(s) 172
TasI AATT 1 cut(s) 323
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 2 cut(s) 19, 233
Tru1I TTAA 2 cut(s) 357, 489
Tru9I TTAA 2 cut(s) 357, 489
TseI GCWGC 2 cut(s) 165, 558
TspDTI ATGAA 3 cut(s) 17, 125, 134
TspGWI ACGGA 1 cut(s) 424
VpaK11BI GGWCC 1 cut(s) 425
XbaI TCTAGA 2 cut(s) 265, 544
XceI RCATGY 1 cut(s) 84
XspI CTAG 3 cut(s) 266, 366, 545
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.