Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0010586

Physical Location & Seq

Genomic Coordinates Reverse (-)

30098359 .. 30098850

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G022010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCAGAAATCTCCTGTTCATCCAAAATATGAGATGGGGTTTGATGGCAGCAATCGATTTGATCCTCAGAATGACTTCTATGAAAGATCAGGGCAAGAGAAGAAGAAGAAGAAATCATGGAAGAAATTACTATTTCCATGGTTGAAAGGCGAGAAGGTTAACAAAACTAGCACAAAATCAGCAACCAAATCTCAAGTATCTGATGCAAGACGGACTAATGTTTCTGGTCCGGTATTTGGCACCGGCAAGGCTATGGATGGCAGGCTCCGGCGCCCCTTATCCGGGCCTATTAACAGTCTGTTCAGACCAACCATAAGAGCAGATAGTGAGGTACCCTATAAGTCTCTAGACAAGTCCGGCAACCCTCAAGTTGTTCAAACGTATGGCCCTGTTTATCTAGTGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.3

Weight (kDa)

10.23

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010586)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35970
malus_domestica	MD09G1172200.v1.1 MD17G1154700.v1.1
prunus_persica	Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1 Prupe.3G030600_v2.0.a1
pyrus_communis	pycom09g08980 pycom17g14750
rosa_chinensis	RchiOBHm_Chr2g0148091
rosa_laevigata	RLG00000020312
rosa_multiflora	Rmu_sc0002002.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099160
rosa_rugosa	Rorug02G0403500 Rorug02G0403500
rosa_samantha	Rh2AG461200 Rh2BG475000 Rh2CG448300 Rh2DG483600
rosa_wichuraiana	Rw2G037650 Rw5G022010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	331
AccB1I	GGYRCC	3 cut(s)	239, 270, 331
AclWI	GGATC	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	271
AfaI	GTAC	1 cut(s)	333
AfiI	CCNNNNNNNGG	3 cut(s)	236, 281, 282
AgsI	TTSAA	2 cut(s)	145, 377
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	2 cut(s)	284, 385
ApeKI	GCWGC	1 cut(s)	48
Asp700I	GAANNNNTTC	1 cut(s)	74
Asp718I	GGTACC	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	3 cut(s)	227, 284, 386
AsuC2I	CCSGG	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	227
BanI	GGYRCC	3 cut(s)	239, 270, 331
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	3 cut(s)	28, 38, 251
BcnI	CCSGG	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	348
BfaI	CTAG	3 cut(s)	168, 347, 398
BfoI	RGCGCY	1 cut(s)	274
BisI	GCNGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	50
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	3 cut(s)	227, 284, 386
BmiI	GGNNCC	4 cut(s)	241, 266, 272, 333
BmrFI	CCNGG	1 cut(s)	283
BmsI	GCATC	1 cut(s)	193
BpuEI	CTTGAG	2 cut(s)	177, 351
BpuMI	CCSGG	1 cut(s)	283
Bsa29I	ATCGAT	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	137
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 281, 282
Bse118I	RCCGGY	1 cut(s)	242
BseCI	ATCGAT	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	2 cut(s)	19, 262
BseLI	CCNNNNNNNGG	3 cut(s)	236, 281, 282
BseMII	CTCAG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	60
BshFI	GGCC	2 cut(s)	286, 387
BshNI	GGYRCC	3 cut(s)	239, 270, 331
BshVI	ATCGAT	1 cut(s)	55
BsiSI	CCGG	5 cut(s)	230, 243, 268, 282, 357
BslI	CCNNNNNNNGG	3 cut(s)	236, 281, 282
BsmAI	GTCTC	1 cut(s)	348
BsnI	GGCC	2 cut(s)	286, 387
Bsp143I	GATC	2 cut(s)	61, 86
Bsp19I	CCATGG	1 cut(s)	137
BspANI	GGCC	2 cut(s)	286, 387
BspCNI	CTCAG	1 cut(s)	79
BspDI	ATCGAT	1 cut(s)	55
BspLI	GGNNCC	4 cut(s)	241, 266, 272, 333
BspPI	GGATC	1 cut(s)	56
BspT107I	GGYRCC	3 cut(s)	239, 270, 331
BsrFI	RCCGGY	1 cut(s)	242
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	2 cut(s)	61, 86
BssNI	GRCGYC	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	296
BstACI	GRCGYC	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	1 cut(s)	66
BstDSI	CCRYGG	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	19, 262
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	2 cut(s)	64, 89
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	2 cut(s)	61, 86
BstSCI	CCNGG	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	60
Bsu15I	ATCGAT	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	286, 387
BsuTUI	ATCGAT	1 cut(s)	55
BtgI	CCRYGG	1 cut(s)	137
BtsCI	GGATG	2 cut(s)	19, 262
Cac8I	GCNNGC	1 cut(s)	263
CfoI	GCGC	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	3 cut(s)	227, 284, 386
ClaI	ATCGAT	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	2 cut(s)	117, 138
CviJI	RGCY	4 cut(s)	251, 265, 286, 387
CviKI_1	RGCY	4 cut(s)	251, 265, 286, 387
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	1 cut(s)	66
DinI	GGCGCC	1 cut(s)	272
DpnI	GATC	2 cut(s)	63, 88
DpnII	GATC	2 cut(s)	61, 86
Eco130I	CCWWGG	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	137
EgeI	GGCGCC	1 cut(s)	272
EheI	GGCGCC	1 cut(s)	272
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	2 cut(s)	120, 141
FaiI	YATR	8 cut(s)	30, 81, 118, 139, 254, 314, 339, 384
FatI	CATG	2 cut(s)	116, 137
Fnu4HI	GCNGC	1 cut(s)	49
FokI	GGATG	2 cut(s)	6, 269
Fsp4HI	GCNGC	1 cut(s)	49
FspBI	CTAG	3 cut(s)	168, 347, 398
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	1 cut(s)	49
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	2 cut(s)	286, 387
HapII	CCGG	5 cut(s)	230, 243, 268, 282, 357
HhaI	GCGC	1 cut(s)	273
Hin1I	GRCGYC	1 cut(s)	271
Hin1II	CATG	2 cut(s)	120, 141
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HpaI	GTTAAC	1 cut(s)	160
HpaII	CCGG	5 cut(s)	230, 243, 268, 282, 357
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	3 cut(s)	69, 202, 305
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	2 cut(s)	4, 206
HpyF3I	CTNAG	1 cut(s)	66
HpySE526I	ACGT	1 cut(s)	380
Hsp92I	GRCGYC	1 cut(s)	271
Hsp92II	CATG	2 cut(s)	120, 141
HspAI	GCGC	1 cut(s)	271
KasI	GGCGCC	1 cut(s)	270
KpnI	GGTACC	1 cut(s)	335
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	61, 86
LmnI	GCTCC	1 cut(s)	270
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	3 cut(s)	168, 347, 398
MaeII	ACGT	1 cut(s)	380
MalI	GATC	2 cut(s)	63, 88
MboI	GATC	2 cut(s)	61, 86
MboII	GAAGA	5 cut(s)	112, 115, 118, 121, 133
MluCI	AATT	1 cut(s)	125
Mly113I	GGCGCC	1 cut(s)	271
MnlI	CCTC	3 cut(s)	75, 322, 375
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	2 cut(s)	159, 291
MspI	CCGG	5 cut(s)	230, 243, 268, 282, 357
MspR9I	CCNGG	1 cut(s)	283
NarI	GGCGCC	1 cut(s)	271
NciI	CCSGG	1 cut(s)	283
NcoI	CCATGG	1 cut(s)	137
NdeII	GATC	2 cut(s)	61, 86
NlaIII	CATG	2 cut(s)	120, 141
NlaIV	GGNNCC	4 cut(s)	241, 266, 272, 333
PdmI	GAANNNNTTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	50
PluTI	GGCGCC	1 cut(s)	274
PspN4I	GGNNCC	4 cut(s)	241, 266, 272, 333
PspPI	GGNCC	3 cut(s)	227, 284, 386
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	159, 291
SatI	GCNGC	1 cut(s)	49
Sau3AI	GATC	2 cut(s)	61, 86
Sau96I	GGNCC	3 cut(s)	227, 284, 386
ScrFI	CCNGG	1 cut(s)	283
SetI	ASST	3 cut(s)	159, 333, 383
SfaNI	GCATC	1 cut(s)	193
SfoI	GGCGCC	1 cut(s)	272
SinI	GGWCC	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	192, 366
SmoI	CTYRAG	2 cut(s)	192, 366
Sse9I	AATT	1 cut(s)	125
SspDI	GGCGCC	1 cut(s)	270
SspMI	CTAG	3 cut(s)	168, 347, 398
StyD4I	CCNGG	1 cut(s)	281
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	1 cut(s)	55
TasI	AATT	1 cut(s)	125
Tru1I	TTAA	2 cut(s)	159, 291
Tru9I	TTAA	2 cut(s)	159, 291
TseI	GCWGC	1 cut(s)	48
TspDTI	ATGAA	2 cut(s)	8, 96
TspGWI	ACGGA	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	227
XbaI	TCTAGA	1 cut(s)	346
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	3 cut(s)	168, 347, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.