FvH4_6g37890

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004442
Physical Location & Seq
Reverse (-)
29845156 .. 29850438
5283 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37890.t3

Sequence Viewer

Length: 1011 bp
ATGAGGTTCTACATATCCACAACGGGGATAAAGAGGTTAACGATATCCGGCGCCGGCAACGGTAAGGGATCTCCGGCGCCGGCGTCCACCAGGAGATTCTCCGGCAGGACGCTGTTGCCGCTCGTCCTCGTCCTCGCTCTCGTTTTGCCGTTTCTCTTCGTCAGGATCGCTTTCATTGTTCTCGAATCCGCGTCCGCCTGTTCTTCCTCGCCTGATTGTATAGGATGGAGGTTTTTCAGCGGGAGTGACGCGTCTGTTCTCAGGGAGGAATTGACAAGAGCGCTACTAGAAGCAAAGGATGGTAACATTGATGATAATGAGGGTGGTGGGATAGAGTCATTCAACCAGCTTGTCCAGGAAATGACATTAAAACAGCAAGACGTCAAGGCATTCGCATTCAGAACAAAAGCTATGCTATCAAAGATGGAACACAAGGTTCAGTCAGCCAGGCAGCGGGAGTCAATTTATTGGCATTTAGCTTCACATGGTGTGCCCAAGGGTGTTCATTGTCTTTGCCTCAAGTTAGCCGAAGAATATGCAGTAAATGCGCTGGCTCGATCTCGTTTACCATCACCTGAATATGTCTCTCAACTTTCTGATCCCTCATTTCACCATCTTGTTCTCCTATCAGATAACGTCCTCGCAGCTTCTGTTGTTGTCTCGTCTACAGTCCAAAATTCAGCCAACCCTGAAAAATTGATTTTTCATATAGTCACTGACAAGAAAACTTACACTCCAATGCATGCTTGGTTTGCAACTAATTCTATTAAATCAGCAGTGGTGGAAGTTAAAGGGTTACACCAATACGACTGGTCTCAGGAAGTAAATCTTGCAGTCAAAGATATGTTAGAGATCCACCGCTCAATCTGGAGACATTATTACAAAAATTTGAAAGAGCATGACTTTGAATTTGATGAAGAACATAAAAGATACCTTGAAGCTTTGAGTCCCAGCGGACTTTCCCTCATGAACCTTCTTCGAATTTATATCCCTGAGATCTCAACAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0047262
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_8

Protein Analysis

337

Amino Acids

37.75

Weight (kDa)

8.55

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 173 - 503 2.6e-61 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 384
AccB1I GGYRCC 2 cut(s) 50, 76
AccBSI CCGCTC 2 cut(s) 121, 861
AccI GTMKAC 1 cut(s) 665
AccII CGCG 2 cut(s) 191, 251
AciI CCGC 7 cut(s) 119, 189, 195, 240, 454, 859, 954
AclWI GGATC 4 cut(s) 76, 173, 593, 847
AcsI RAATTY 4 cut(s) 676, 886, 908, 981
AcyI GRCGYC 4 cut(s) 51, 77, 83, 381
AdeI CACNNNGTG 1 cut(s) 488
AfeI AGCGCT 1 cut(s) 282
AfiI CCNNNNNNNGG 2 cut(s) 24, 453
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 4 cut(s) 343, 892, 908, 938
AjnI CCWGG 3 cut(s) 89, 354, 446
AluBI AGCT 5 cut(s) 349, 410, 479, 647, 941
AluI AGCT 5 cut(s) 349, 410, 479, 647, 941
Alw26I GTCTC 4 cut(s) 589, 664, 819, 865
AlwI GGATC 4 cut(s) 76, 173, 593, 847
AlwNI CAGNNNCTG 1 cut(s) 650
Aor51HI AGCGCT 1 cut(s) 282
ApeKI GCWGC 2 cut(s) 451, 644
ApoI RAATTY 4 cut(s) 676, 886, 908, 981
ArsI GACNNNNNNTTYG 2 cut(s) 893, 925
AspLEI GCGC 4 cut(s) 53, 79, 283, 550
AsuHPI GGTGA 2 cut(s) 564, 602
AsuII TTCGAA 1 cut(s) 979
BaeGI GKGCMC 1 cut(s) 495
BanI GGYRCC 2 cut(s) 50, 76
BbvI GCAGC 2 cut(s) 463, 656
BccI CCATC 5 cut(s) 219, 293, 418, 577, 621
BceAI ACGGC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 518, 552
BciT130I CCWGG 3 cut(s) 91, 356, 448
BcoDI GTCTC 4 cut(s) 589, 664, 819, 865
BfaI CTAG 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 666
BfoI RGCGCY 3 cut(s) 54, 80, 284
BglII AGATCT 1 cut(s) 996
BisI GCNGC 3 cut(s) 119, 452, 645
BlsI GCNGC 3 cut(s) 120, 453, 646
Bme1390I CCNGG 3 cut(s) 91, 356, 448
BmiI GGNNCC 2 cut(s) 52, 78
BmrFI CCNGG 3 cut(s) 91, 356, 448
BpmI CTGGAG 1 cut(s) 889
Bpu14I TTCGAA 1 cut(s) 979
BpuEI CTTGAG 1 cut(s) 503
BsaHI GRCGYC 4 cut(s) 51, 77, 83, 381
BsaI GGTCTC 1 cut(s) 819
BsaJI CCNNGG 1 cut(s) 495
BsaXI ACNNNNNCTCC 2 cut(s) 718, 748
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 453
Bse118I RCCGGY 2 cut(s) 53, 79
Bse1I ACTGG 1 cut(s) 815
BseBI CCWGG 3 cut(s) 91, 356, 448
BseDI CCNNGG 1 cut(s) 495
BseGI GGATG 2 cut(s) 230, 304
BseLI CCNNNNNNNGG 2 cut(s) 24, 453
BseMII CTCAG 3 cut(s) 274, 830, 984
BseNI ACTGG 1 cut(s) 815
BseSI GKGCMC 1 cut(s) 495
BseXI GCAGC 2 cut(s) 463, 656
BseYI CCCAGC 1 cut(s) 950
Bsh1236I CGCG 2 cut(s) 191, 251
BshNI GGYRCC 2 cut(s) 50, 76
BsiSI CCGG 5 cut(s) 48, 54, 74, 80, 102
BslFI GGGAC 1 cut(s) 933
BslI CCNNNNNNNGG 2 cut(s) 24, 453
BsmAI GTCTC 4 cut(s) 589, 664, 819, 865
BsmFI GGGAC 1 cut(s) 933
BsmI GAATGC 2 cut(s) 389, 395
Bso31I GGTCTC 1 cut(s) 819
Bsp119I TTCGAA 1 cut(s) 979
Bsp1286I GDGCHC 1 cut(s) 495
Bsp143I GATC 6 cut(s) 68, 165, 557, 598, 852, 996
BspACI CCGC 7 cut(s) 119, 189, 195, 240, 454, 859, 954
BspCNI CTCAG 3 cut(s) 273, 829, 985
BspFNI CGCG 2 cut(s) 191, 251
BspHI TCATGA 1 cut(s) 966
BspLI GGNNCC 2 cut(s) 52, 78
BspPI GGATC 4 cut(s) 76, 173, 593, 847
BspT104I TTCGAA 1 cut(s) 979
BspT107I GGYRCC 2 cut(s) 50, 76
BspTNI GGTCTC 1 cut(s) 819
BsrBI CCGCTC 2 cut(s) 121, 861
BsrFI RCCGGY 2 cut(s) 53, 79
BsrI ACTGG 1 cut(s) 815
BssAI RCCGGY 2 cut(s) 53, 79
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 6 cut(s) 68, 165, 557, 598, 852, 996
BssNI GRCGYC 4 cut(s) 51, 77, 83, 381
BssT1I CCWWGG 1 cut(s) 495
Bst2UI CCWGG 3 cut(s) 91, 356, 448
Bst4CI ACNGT 2 cut(s) 62, 670
Bst6I CTCTTC 1 cut(s) 161
BstACI GRCGYC 4 cut(s) 51, 77, 83, 381
BstAPI GCANNNNNTGC 1 cut(s) 545
BstBI TTCGAA 1 cut(s) 979
BstC8I GCNNGC 4 cut(s) 55, 81, 552, 744
BstDEI CTNAG 3 cut(s) 260, 816, 993
BstF5I GGATG 2 cut(s) 230, 304
BstFNI CGCG 2 cut(s) 191, 251
BstH2I RGCGCY 3 cut(s) 54, 80, 284
BstHHI GCGC 4 cut(s) 53, 79, 283, 550
BstKTI GATC 6 cut(s) 71, 168, 560, 601, 855, 999
BstMAI GTCTC 4 cut(s) 589, 664, 819, 865
BstMBI GATC 6 cut(s) 68, 165, 557, 598, 852, 996
BstMWI GCNNNNNNNGC 3 cut(s) 118, 545, 752
BstNI CCWGG 3 cut(s) 91, 356, 448
BstNSI RCATGY 1 cut(s) 746
BstSCI CCNGG 3 cut(s) 89, 354, 446
BstSFI CTRYAG 1 cut(s) 666
BstSLI GKGCMC 1 cut(s) 495
BstUI CGCG 2 cut(s) 191, 251
BstV1I GCAGC 2 cut(s) 463, 656
BstX2I RGATCY 3 cut(s) 68, 852, 996
BstYI RGATCY 3 cut(s) 68, 852, 996
BtsCI GGATG 2 cut(s) 230, 304
BtsI GCAGTG 1 cut(s) 783
BtsIMutI CAGTG 2 cut(s) 714, 783
Cac8I GCNNGC 4 cut(s) 55, 81, 552, 744
CaiI CAGNNNCTG 1 cut(s) 650
CciI TCATGA 1 cut(s) 966
CfoI GCGC 4 cut(s) 53, 79, 283, 550
Cfr10I RCCGGY 2 cut(s) 53, 79
CseI GACGC 5 cut(s) 72, 118, 180, 240, 257
CviAII CATG 4 cut(s) 485, 743, 899, 967
CviJI RGCY 9 cut(s) 349, 410, 446, 479, 527, 554, 647, 683, 941
CviKI_1 RGCY 9 cut(s) 349, 410, 446, 479, 527, 554, 647, 683, 941
DdeI CTNAG 3 cut(s) 260, 816, 993
DinI GGCGCC 2 cut(s) 52, 78
DpnI GATC 6 cut(s) 70, 167, 559, 600, 854, 998
DpnII GATC 6 cut(s) 68, 165, 557, 598, 852, 996
DraIII CACNNNGTG 1 cut(s) 488
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
EciI GGCGGA 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 495
Eco31I GGTCTC 1 cut(s) 819
Eco32I GATATC 1 cut(s) 45
Eco47III AGCGCT 1 cut(s) 282
EcoRII CCWGG 3 cut(s) 89, 354, 446
EcoRV GATATC 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 495
EcoT22I ATGCAT 1 cut(s) 744
EgeI GGCGCC 2 cut(s) 52, 78
EheI GGCGCC 2 cut(s) 52, 78
ErhI CCWWGG 1 cut(s) 495
FaeI CATG 4 cut(s) 488, 746, 902, 970
FalI AAGNNNNNCTT 2 cut(s) 813, 845
FaqI GGGAC 1 cut(s) 933
FatI CATG 4 cut(s) 484, 742, 898, 966
FauI CCCGC 2 cut(s) 233, 447
FblI GTMKAC 1 cut(s) 665
Fnu4HI GCNGC 3 cut(s) 119, 452, 645
FokI GGATG 2 cut(s) 237, 311
Fsp4HI GCNGC 3 cut(s) 119, 452, 645
FspBI CTAG 1 cut(s) 287
GlaI GCGC 4 cut(s) 52, 78, 282, 549
GluI GCNGC 3 cut(s) 119, 452, 645
GsaI CCCAGC 1 cut(s) 954
GsuI CTGGAG 1 cut(s) 889
HaeII RGCGCY 3 cut(s) 54, 80, 284
HapII CCGG 5 cut(s) 48, 54, 74, 80, 102
HgaI GACGC 5 cut(s) 72, 118, 180, 240, 257
HhaI GCGC 4 cut(s) 53, 79, 283, 550
Hin1I GRCGYC 4 cut(s) 51, 77, 83, 381
Hin1II CATG 4 cut(s) 488, 746, 902, 970
Hin6I GCGC 4 cut(s) 51, 77, 281, 548
HinP1I GCGC 4 cut(s) 51, 77, 281, 548
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HindIII AAGCTT 1 cut(s) 939
HinfI GANTC 5 cut(s) 96, 185, 335, 458, 946
HpaI GTTAAC 1 cut(s) 39
HpaII CCGG 5 cut(s) 48, 54, 74, 80, 102
HphI GGTGA 2 cut(s) 564, 602
Hpy166II GTNNAC 4 cut(s) 39, 87, 566, 666
Hpy188I TCNGA 3 cut(s) 401, 598, 631
Hpy188III TCNNGA 5 cut(s) 163, 182, 818, 868, 967
Hpy8I GTNNAC 4 cut(s) 39, 87, 566, 666
HpyAV CCTTC 1 cut(s) 983
HpyCH4III ACNGT 2 cut(s) 62, 670
HpyCH4IV ACGT 2 cut(s) 381, 636
HpyCH4V TGCA 4 cut(s) 539, 742, 755, 833
HpyF10VI GCNNNNNNNGC 3 cut(s) 118, 545, 752
HpyF3I CTNAG 3 cut(s) 260, 816, 993
HpySE526I ACGT 2 cut(s) 381, 636
Hsp92I GRCGYC 4 cut(s) 51, 77, 83, 381
Hsp92II CATG 4 cut(s) 488, 746, 902, 970
HspAI GCGC 4 cut(s) 51, 77, 281, 548
KasI GGCGCC 2 cut(s) 50, 76
KroI GCCGGC 2 cut(s) 53, 79
KroNI GCCGGC 2 cut(s) 55, 81
KspAI GTTAAC 1 cut(s) 39
Kzo9I GATC 6 cut(s) 68, 165, 557, 598, 852, 996
Lsp1109I GCAGC 2 cut(s) 463, 656
MaeI CTAG 1 cut(s) 287
MaeII ACGT 2 cut(s) 381, 636
MaeIII GTNAC 4 cut(s) 245, 302, 712, 795
MalI GATC 6 cut(s) 70, 167, 559, 600, 854, 998
MbiI CCGCTC 2 cut(s) 121, 861
MboI GATC 6 cut(s) 68, 165, 557, 598, 852, 996
MboII GAAGA 5 cut(s) 148, 195, 542, 929, 968
MflI RGATCY 3 cut(s) 68, 852, 996
MhlI GDGCHC 1 cut(s) 495
MluCI AATT 8 cut(s) 269, 462, 676, 695, 760, 886, 908, 981
MluI ACGCGT 1 cut(s) 249
Mly113I GGCGCC 2 cut(s) 51, 77
MlyI GAGTC 3 cut(s) 344, 467, 955
Mph1103I ATGCAT 1 cut(s) 744
MreI CGCCGGCG 1 cut(s) 79
MroNI GCCGGC 2 cut(s) 53, 79
MseI TTAA 4 cut(s) 38, 368, 768, 789
MslI CAYNNNNRTG 1 cut(s) 737
MspA1I CMGCKG 3 cut(s) 240, 454, 954
MspI CCGG 5 cut(s) 48, 54, 74, 80, 102
MspR9I CCNGG 3 cut(s) 91, 356, 448
Mva1269I GAATGC 2 cut(s) 389, 395
MvaI CCWGG 3 cut(s) 91, 356, 448
MvnI CGCG 2 cut(s) 191, 251
MwoI GCNNNNNNNGC 3 cut(s) 118, 545, 752
NaeI GCCGGC 2 cut(s) 55, 81
NarI GGCGCC 2 cut(s) 51, 77
NdeII GATC 6 cut(s) 68, 165, 557, 598, 852, 996
NgoMIV GCCGGC 2 cut(s) 53, 79
NlaIII CATG 4 cut(s) 488, 746, 902, 970
NlaIV GGNNCC 2 cut(s) 52, 78
NmuCI GTSAC 2 cut(s) 245, 712
NsiI ATGCAT 1 cut(s) 744
NspI RCATGY 1 cut(s) 746
NspV TTCGAA 1 cut(s) 979
PaeI GCATGC 1 cut(s) 746
PagI TCATGA 1 cut(s) 966
PctI GAATGC 2 cut(s) 389, 395
PdiI GCCGGC 2 cut(s) 55, 81
PfeI GAWTC 2 cut(s) 96, 185
PfoI TCCNGGA 1 cut(s) 354
PkrI GCNGC 3 cut(s) 120, 453, 646
PleI GAGTC 3 cut(s) 343, 466, 954
PluTI GGCGCC 2 cut(s) 54, 80
PpsI GAGTC 3 cut(s) 343, 466, 954
Psp6I CCWGG 3 cut(s) 89, 354, 446
PspFI CCCAGC 1 cut(s) 950
PspGI CCWGG 3 cut(s) 89, 354, 446
PspN4I GGNNCC 2 cut(s) 52, 78
PstNI CAGNNNCTG 1 cut(s) 650
PsuI RGATCY 3 cut(s) 68, 852, 996
RseI CAYNNNNRTG 1 cut(s) 737
SaqAI TTAA 4 cut(s) 38, 368, 768, 789
SatI GCNGC 3 cut(s) 119, 452, 645
Sau3AI GATC 6 cut(s) 68, 165, 557, 598, 852, 996
SchI GAGTC 3 cut(s) 344, 467, 955
ScrFI CCNGG 3 cut(s) 91, 356, 448
SduI GDGCHC 1 cut(s) 495
SfcI CTRYAG 1 cut(s) 666
SfoI GGCGCC 2 cut(s) 52, 78
SfuI TTCGAA 1 cut(s) 979
SgrAI CRCCGGYG 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 737
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
SphI GCATGC 1 cut(s) 746
Sse9I AATT 8 cut(s) 269, 462, 676, 695, 760, 886, 908, 981
SsiI CCGC 7 cut(s) 119, 189, 195, 240, 454, 859, 954
SspDI GGCGCC 2 cut(s) 50, 76
SspMI CTAG 1 cut(s) 287
StyD4I CCNGG 3 cut(s) 89, 354, 446
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 2 cut(s) 62, 670
TaiI ACGT 2 cut(s) 384, 639
TaqI TCGA 3 cut(s) 183, 556, 979
TasI AATT 8 cut(s) 269, 462, 676, 695, 760, 886, 908, 981
TauI GCSGC 1 cut(s) 121
TfiI GAWTC 2 cut(s) 96, 185
Tru1I TTAA 4 cut(s) 38, 368, 768, 789
Tru9I TTAA 4 cut(s) 38, 368, 768, 789
TscAI CASTG 2 cut(s) 721, 783
TseFI GTSAC 2 cut(s) 245, 712
TseI GCWGC 2 cut(s) 451, 644
Tsp45I GTSAC 2 cut(s) 245, 712
TspDTI ATGAA 5 cut(s) 163, 494, 695, 930, 983
TspRI CASTG 2 cut(s) 721, 783
XapI RAATTY 4 cut(s) 676, 886, 908, 981
XceI RCATGY 1 cut(s) 746
XcmI CCANNNNNNNNNTGG 1 cut(s) 744
XmiI GTMKAC 1 cut(s) 665
XspI CTAG 1 cut(s) 287
ZraI GACGTC 1 cut(s) 382
Zsp2I ATGCAT 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.