Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004442

Physical Location & Seq

Genomic Coordinates Forward (+)

5568406 .. 5569353

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAAGTTTTATATATCCACGACGGGGATAAAGAGGCTGACGATATCCAGCGCCGGCGCCGGGAAGGGATCTCCTTCGACGGCGGCGACTCGGAGGATTTCCGGCCGGACGGTCTTGCCGTTGTTGCTGGTGCTCGCGTTAGTTTTGCCCTTCCTTTTCGTTAGAATTGCGTTCATTGTCCTTGAATCTACCACTGCTTGCTCTTCCACGCTCGACTGCGTAGGTTGGAGGTTTTTCAGCGGGAGTGACGAATCATTATTTTTTAATAAGAATTTTCAAAAATATTTTCATCAAAAGCGTTTTCAGTTATTTATTTATTCTGAAAAAACGATTGTATCTACACTAAGGGGGTGTGGGAGTAAGCTAAGCCTTACAATGAATTTACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0047262

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

130

Amino Acids

14.32

Weight (kDa)

10.25

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58790 AT3G58790
fragaria_vesca	FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890
malus_domestica	MD09G1155100.v1.1 MD17G1141200.v1.1
prunus_persica	Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1
pyrus_communis	pycom09g07390 pycom17g13450 pycom17g13460
rosa_chinensis	RchiOBHm_Chr2g0151041
rosa_laevigata	RLG00000020526
rosa_multiflora	Rmu_sc0000185.1_g000041
rosa_roxburghii	Rroxscaffold_2G00096740
rosa_rugosa	Rorug02G0424000 Rorug02G0424100
rosa_samantha	Rh2AG484700 Rh2BG497100 Rh2CG470900 Rh2DG507900
rosa_wichuraiana	Rw2G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AccII	CGCG	1 cut(s)	137
AciI	CCGC	2 cut(s)	83, 240
AclWI	GGATC	1 cut(s)	76
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	2 cut(s)	271, 379
AcyI	GRCGYC	1 cut(s)	57
AfiI	CCNNNNNNNGG	2 cut(s)	24, 60
AgsI	TTSAA	2 cut(s)	185, 278
AluBI	AGCT	1 cut(s)	364
AluI	AGCT	1 cut(s)	364
Alw21I	GWGCWC	1 cut(s)	135
AlwI	GGATC	1 cut(s)	76
AoxI	GGCC	1 cut(s)	103
ApoI	RAATTY	2 cut(s)	271, 379
AspLEI	GCGC	2 cut(s)	53, 59
AsuC2I	CCSGG	1 cut(s)	61
BaeI	ACNNNNGTAYC	2 cut(s)	318, 351
BanI	GGYRCC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	135
BceAI	ACGGC	2 cut(s)	96, 103
BcnI	CCSGG	1 cut(s)	61
BfoI	RGCGCY	2 cut(s)	54, 60
BisI	GCNGC	1 cut(s)	84
BlpI	GCTNAGC	1 cut(s)	365
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	61
Bpu1102I	GCTNAGC	1 cut(s)	365
BpuMI	CCSGG	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 60
Bse118I	RCCGGY	1 cut(s)	53
BseLI	CCNNNNNNNGG	2 cut(s)	24, 60
BseX3I	CGGCCG	1 cut(s)	103
Bsh1236I	CGCG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	105
BshNI	GGYRCC	1 cut(s)	56
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	4 cut(s)	54, 60, 102, 106
BslI	CCNNNNNNNGG	2 cut(s)	24, 60
BsnI	GGCC	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	68
Bsp1720I	GCTNAGC	1 cut(s)	365
BspACI	CCGC	2 cut(s)	83, 240
BspANI	GGCC	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	1 cut(s)	76
BspQI	GCTCTTC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssMI	GATC	1 cut(s)	68
BssNI	GRCGYC	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	208
BstACI	GRCGYC	1 cut(s)	57
BstC8I	GCNNGC	3 cut(s)	55, 135, 199
BstDEI	CTNAG	2 cut(s)	344, 365
BstFNI	CGCG	1 cut(s)	137
BstH2I	RGCGCY	2 cut(s)	54, 60
BstHHI	GCGC	2 cut(s)	53, 59
BstKTI	GATC	1 cut(s)	71
BstMBI	GATC	1 cut(s)	68
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	59
BstUI	CGCG	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BstZI	CGGCCG	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	105
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	3 cut(s)	55, 135, 199
CfoI	GCGC	2 cut(s)	53, 59
Cfr10I	RCCGGY	1 cut(s)	53
CviJI	RGCY	4 cut(s)	37, 105, 364, 369
CviKI_1	RGCY	4 cut(s)	37, 105, 364, 369
DdeI	CTNAG	2 cut(s)	344, 365
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
EaeI	YGGCCR	1 cut(s)	103
EagI	CGGCCG	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
EclXI	CGGCCG	1 cut(s)	103
Eco32I	GATATC	1 cut(s)	45
Eco52I	CGGCCG	1 cut(s)	103
EcoRV	GATATC	1 cut(s)	45
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
FaiI	YATR	3 cut(s)	12, 14, 388
FauI	CCCGC	1 cut(s)	233
Fnu4HI	GCNGC	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	84
GlaI	GCGC	2 cut(s)	52, 58
GluI	GCNGC	1 cut(s)	84
HaeII	RGCGCY	2 cut(s)	54, 60
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	4 cut(s)	54, 60, 102, 106
HhaI	GCGC	2 cut(s)	53, 59
Hin1I	GRCGYC	1 cut(s)	57
Hin6I	GCGC	2 cut(s)	51, 57
HinP1I	GCGC	2 cut(s)	51, 57
HinfI	GANTC	3 cut(s)	88, 185, 251
HpaII	CCGG	4 cut(s)	54, 60, 102, 106
Hpy188I	TCNGA	2 cut(s)	93, 322
Hpy99I	CGWCG	2 cut(s)	25, 82
HpyAV	CCTTC	3 cut(s)	58, 84, 160
HpyCH4III	ACNGT	1 cut(s)	112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	2 cut(s)	344, 365
Hsp92I	GRCGYC	1 cut(s)	57
HspAI	GCGC	2 cut(s)	51, 57
KasI	GGCGCC	1 cut(s)	56
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	68
LguI	GCTCTTC	1 cut(s)	208
LpnPI	CCDG	6 cut(s)	61, 67, 73, 113, 115, 119
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	1 cut(s)	70
MboI	GATC	1 cut(s)	68
MboII	GAAGA	1 cut(s)	195
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	3 cut(s)	165, 271, 379
Mly113I	GGCGCC	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	3 cut(s)	27, 87, 222
MreI	CGCCGGCG	1 cut(s)	53
MroNI	GCCGGC	1 cut(s)	53
MseI	TTAA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	240
MspI	CCGG	4 cut(s)	54, 60, 102, 106
MspR9I	CCNGG	1 cut(s)	61
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	124
NaeI	GCCGGC	1 cut(s)	55
NarI	GGCGCC	1 cut(s)	57
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	1 cut(s)	68
NgoMIV	GCCGGC	1 cut(s)	53
NlaIV	GGNNCC	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	245
PciSI	GCTCTTC	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	2 cut(s)	83, 116
PdiI	GCCGGC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	185, 251
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	82
PluTI	GGCGCC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	68
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	3 cut(s)	226, 233, 366
SfoI	GGCGCC	1 cut(s)	58
SgrAI	CRCCGGYG	1 cut(s)	53
Sse9I	AATT	3 cut(s)	165, 271, 379
SsiI	CCGC	2 cut(s)	83, 240
SspDI	GGCGCC	1 cut(s)	56
SspI	AATATT	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	2 cut(s)	77, 213
TasI	AATT	3 cut(s)	165, 271, 379
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	2 cut(s)	185, 251
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	3 cut(s)	17, 163, 278
TspRI	CASTG	1 cut(s)	199
XapI	RAATTY	2 cut(s)	271, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.