Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004442

Physical Location & Seq

Genomic Coordinates Forward (+)

11063769 .. 11064838

Gene Structure 1070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g13460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCATGCATGGTTTGCAATTAATTCTTTTCAATCAGCAGTGGTGGAAGTTAAAGGGCTACACCAGTACGACTGGTCTCAGGAGGTAAATGTTGGAGTCAAGGAGATGCTAGAGATCCTTCGCCAGATTTGGAGACGTTACTATAGAAATTTGAAAGAAGATGATTTTGAATCCGATGGAGAACATAAAAGATTGTTAGCAGCTCTGAGTCCCAGCTGCCTTTCCCTTATGAACCTTCTTCGAATCTATATCCCCGAGCTTTTTCCAGATCTCGACAAGATAGTGTTCTTGGACGATGATATTGTTGTACAACATGACTTATCATCTTTGTGGGAACTGGATCTCAATGGAAATGTTGTTGGTGCAGTTGTCAATTCATGGTGCGGTGACAACTGTTGCCCTGGAAGAACTTACAGTGACTACTTCAATTTTTCACACCCTATCATTTCATCCAACTTCGATCGTGATCGTTGTGCGTGGCTGTATGGCATGAATGTCATCGATCTTGAAGCTTGGCGGCAGACCAATATTACAGAAACGTACCATCAATGGTTAAAACTTAACCAGAAGTCTGGGCTGACATTGTGGCATCCAGGAATAGTTCCACCGGCGTTGATTGCATTTGAGGGTCATGTGCATCCTATTGACCCATTATGGCATGTGGCTGGGTTAGGTTCTCGATCTCCAGAGGTTCCCAAAGATATATTGGAAGCTGCTTCGGTCATCCATTTCAGTGGCCCATCAAAGCCATGGCTCGAGATTGGGTGTCCAGAGGTAAGAGGCTTGTGGAACAAGCATGTAAACAGTTCAAACAAGTTTGTTAGGCAATGTAGAATCATGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0047262

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

282

Amino Acids

32.3

Weight (kDa)

5.71

Isoelectric Point (pI)

45.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	12 - 254	2.3e-62	Glycosyl transferase family 8
Glyco_transf_24	PF18404	83 - 183	4.2e-07	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58790 AT3G58790
fragaria_vesca	FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890
malus_domestica	MD09G1155100.v1.1 MD17G1141200.v1.1
prunus_persica	Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1
pyrus_communis	pycom09g07390 pycom17g13450 pycom17g13460
rosa_chinensis	RchiOBHm_Chr2g0151041
rosa_laevigata	RLG00000020526
rosa_multiflora	Rmu_sc0000185.1_g000041
rosa_roxburghii	Rroxscaffold_2G00096740
rosa_rugosa	Rorug02G0424000 Rorug02G0424100
rosa_samantha	Rh2AG484700 Rh2BG497100 Rh2CG470900 Rh2DG507900
rosa_wichuraiana	Rw2G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	384, 517
AclWI	GGATC	2 cut(s)	109, 348
AcsI	RAATTY	1 cut(s)	148
AfaI	GTAC	3 cut(s)	68, 309, 542
AgsI	TTSAA	6 cut(s)	32, 154, 170, 427, 509, 810
AjnI	CCWGG	2 cut(s)	400, 592
AluBI	AGCT	5 cut(s)	203, 216, 259, 512, 713
AluI	AGCT	5 cut(s)	203, 216, 259, 512, 713
Alw26I	GTCTC	2 cut(s)	81, 127
AlwI	GGATC	2 cut(s)	109, 348
Ama87I	CYCGRG	2 cut(s)	254, 755
AoxI	GGCC	1 cut(s)	736
ApeKI	GCWGC	3 cut(s)	200, 216, 713
ApoI	RAATTY	1 cut(s)	148
AseI	ATTAAT	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	737
AsuHPI	GGTGA	1 cut(s)	398
AsuII	TTCGAA	1 cut(s)	241
AvaI	CYCGRG	2 cut(s)	254, 755
BbvI	GCAGC	3 cut(s)	203, 212, 700
BccI	CCATC	3 cut(s)	170, 552, 748
BciT130I	CCWGG	2 cut(s)	402, 594
BcoDI	GTCTC	2 cut(s)	81, 127
BfaI	CTAG	1 cut(s)	110
BfmI	CTRYAG	1 cut(s)	142
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	4 cut(s)	201, 217, 518, 714
BlsI	GCNGC	4 cut(s)	202, 218, 519, 715
Bme1390I	CCNGG	2 cut(s)	402, 594
BmeT110I	CYCGRG	2 cut(s)	254, 755
BmgT120I	GGNCC	1 cut(s)	737
BmiI	GGNNCC	1 cut(s)	693
BmrFI	CCNGG	2 cut(s)	402, 594
BmsI	GCATC	3 cut(s)	96, 598, 646
BpmI	CTGGAG	1 cut(s)	669
Bpu14I	TTCGAA	1 cut(s)	241
Bsa29I	ATCGAT	1 cut(s)	501
BsaBI	GATNNNNATC	1 cut(s)	465
BsaI	GGTCTC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	400, 749
Bse118I	RCCGGY	1 cut(s)	607
Bse1I	ACTGG	3 cut(s)	64, 77, 342
Bse3DI	GCAATG	1 cut(s)	833
Bse8I	GATNNNNATC	1 cut(s)	465
BseBI	CCWGG	2 cut(s)	402, 594
BseCI	ATCGAT	1 cut(s)	501
BseDI	CCNNGG	2 cut(s)	400, 749
BseGI	GGATG	4 cut(s)	449, 589, 637, 723
BseJI	GATNNNNATC	1 cut(s)	465
BseMI	GCAATG	1 cut(s)	833
BseMII	CTCAG	2 cut(s)	92, 197
BseNI	ACTGG	3 cut(s)	64, 77, 342
BseXI	GCAGC	3 cut(s)	203, 212, 700
BseYI	CCCAGC	2 cut(s)	212, 665
BsgI	GTGCAG	1 cut(s)	384
Bsh1285I	CGRYCG	1 cut(s)	463
BshFI	GGCC	1 cut(s)	738
BshVI	ATCGAT	1 cut(s)	501
BsiEI	CGRYCG	1 cut(s)	463
BsiHKCI	CYCGRG	2 cut(s)	254, 755
BsiSI	CCGG	1 cut(s)	608
BslFI	GGGAC	1 cut(s)	195
BsmAI	GTCTC	2 cut(s)	81, 127
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	738
Bso31I	GGTCTC	1 cut(s)	81
BsoBI	CYCGRG	2 cut(s)	254, 755
Bsp119I	TTCGAA	1 cut(s)	241
Bsp1407I	TGTACA	1 cut(s)	307
Bsp143I	GATC	7 cut(s)	114, 268, 340, 460, 466, 502, 680
Bsp19I	CCATGG	1 cut(s)	749
BspACI	CCGC	2 cut(s)	384, 517
BspANI	GGCC	1 cut(s)	738
BspCNI	CTCAG	2 cut(s)	91, 198
BspDI	ATCGAT	1 cut(s)	501
BspLI	GGNNCC	1 cut(s)	693
BspPI	GGATC	2 cut(s)	109, 348
BspT104I	TTCGAA	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	833
BsrFI	RCCGGY	1 cut(s)	607
BsrGI	TGTACA	1 cut(s)	307
BsrI	ACTGG	3 cut(s)	64, 77, 342
BssAI	RCCGGY	1 cut(s)	607
BssECI	CCNNGG	2 cut(s)	400, 749
BssMI	GATC	7 cut(s)	114, 268, 340, 460, 466, 502, 680
BssT1I	CCWWGG	1 cut(s)	749
Bst2UI	CCWGG	2 cut(s)	402, 594
Bst4CI	ACNGT	3 cut(s)	395, 416, 806
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstAUI	TGTACA	1 cut(s)	307
BstBI	TTCGAA	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	78, 206
BstDSI	CCRYGG	1 cut(s)	749
BstF5I	GGATG	4 cut(s)	449, 589, 637, 723
BstKTI	GATC	7 cut(s)	117, 271, 343, 463, 469, 505, 683
BstMAI	GTCTC	2 cut(s)	81, 127
BstMBI	GATC	7 cut(s)	114, 268, 340, 460, 466, 502, 680
BstMCI	CGRYCG	1 cut(s)	463
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 617
BstNI	CCWGG	2 cut(s)	402, 594
BstNSI	RCATGY	3 cut(s)	8, 662, 800
BstSCI	CCNGG	2 cut(s)	400, 592
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	3 cut(s)	203, 212, 700
BstX2I	RGATCY	3 cut(s)	114, 268, 340
BstXI	CCANNNNNNTGG	2 cut(s)	572, 734
BstYI	RGATCY	3 cut(s)	114, 268, 340
Bsu15I	ATCGAT	1 cut(s)	501
BsuRI	GGCC	1 cut(s)	738
BsuTUI	ATCGAT	1 cut(s)	501
BtgI	CCRYGG	1 cut(s)	749
BtsCI	GGATG	4 cut(s)	449, 589, 637, 723
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	3 cut(s)	45, 421, 739
Cac8I	GCNNGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	607
Cfr13I	GGNCC	1 cut(s)	737
ClaI	ATCGAT	1 cut(s)	501
Csp6I	GTAC	3 cut(s)	67, 308, 541
CspCI	CAANNNNNGTGG	2 cut(s)	594, 629
CviQI	GTAC	3 cut(s)	67, 308, 541
DdeI	CTNAG	2 cut(s)	78, 206
DpnI	GATC	7 cut(s)	116, 270, 342, 462, 468, 504, 682
DpnII	GATC	7 cut(s)	114, 268, 340, 460, 466, 502, 680
Eco130I	CCWWGG	1 cut(s)	749
Eco31I	GGTCTC	1 cut(s)	81
Eco88I	CYCGRG	2 cut(s)	254, 755
EcoRII	CCWGG	2 cut(s)	400, 592
EcoT14I	CCWWGG	1 cut(s)	749
EcoT22I	ATGCAT	2 cut(s)	6, 10
ErhI	CCWWGG	1 cut(s)	749
Esp3I	CGTCTC	1 cut(s)	127
FaqI	GGGAC	1 cut(s)	195
Fnu4HI	GCNGC	4 cut(s)	201, 217, 518, 714
FokI	GGATG	4 cut(s)	436, 576, 624, 710
Fsp4HI	GCNGC	4 cut(s)	201, 217, 518, 714
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	4 cut(s)	201, 217, 518, 714
GsaI	CCCAGC	2 cut(s)	216, 669
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	1 cut(s)	738
HapII	CCGG	1 cut(s)	608
HindIII	AAGCTT	1 cut(s)	510
HinfI	GANTC	5 cut(s)	96, 170, 208, 243, 834
HpaII	CCGG	1 cut(s)	608
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	802
Hpy188I	TCNGA	2 cut(s)	175, 207
Hpy188III	TCNNGA	9 cut(s)	80, 266, 272, 464, 506, 678, 686, 757, 770
Hpy8I	GTNNAC	1 cut(s)	802
HpyAV	CCTTC	2 cut(s)	128, 245
HpyCH4III	ACNGT	3 cut(s)	395, 416, 806
HpyCH4IV	ACGT	2 cut(s)	136, 539
HpyCH4V	TGCA	6 cut(s)	4, 8, 17, 365, 620, 637
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 617
HpyF3I	CTNAG	2 cut(s)	78, 206
HpySE526I	ACGT	2 cut(s)	136, 539
Kzo9I	GATC	7 cut(s)	114, 268, 340, 460, 466, 502, 680
Lsp1109I	GCAGC	3 cut(s)	203, 212, 700
LweI	GCATC	3 cut(s)	96, 598, 646
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	2 cut(s)	136, 539
MaeIII	GTNAC	3 cut(s)	137, 386, 416
MalI	GATC	7 cut(s)	116, 270, 342, 462, 468, 504, 682
MboI	GATC	7 cut(s)	114, 268, 340, 460, 466, 502, 680
MboII	GAAGA	3 cut(s)	170, 230, 417
MflI	RGATCY	3 cut(s)	114, 268, 340
MluCI	AATT	5 cut(s)	18, 22, 148, 373, 427
MlyI	GAGTC	2 cut(s)	105, 217
MmeI	TCCRAC	2 cut(s)	73, 477
MnlI	CCTC	5 cut(s)	76, 619, 682, 766, 773
Mph1103I	ATGCAT	2 cut(s)	6, 10
MseI	TTAA	4 cut(s)	21, 51, 554, 561
MslI	CAYNNNNRTG	2 cut(s)	328, 732
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	1 cut(s)	608
MspR9I	CCNGG	2 cut(s)	402, 594
MvaI	CCWGG	2 cut(s)	402, 594
MwoI	GCNNNNNNNGC	2 cut(s)	14, 617
NcoI	CCATGG	1 cut(s)	749
NdeII	GATC	7 cut(s)	114, 268, 340, 460, 466, 502, 680
NlaIV	GGNNCC	1 cut(s)	693
NmuCI	GTSAC	2 cut(s)	386, 416
NsiI	ATGCAT	2 cut(s)	6, 10
NspI	RCATGY	3 cut(s)	8, 662, 800
NspV	TTCGAA	1 cut(s)	241
PaeI	GCATGC	1 cut(s)	8
PaeR7I	CTCGAG	1 cut(s)	755
PfeI	GAWTC	3 cut(s)	170, 243, 834
PfoI	TCCNGGA	1 cut(s)	592
PkrI	GCNGC	4 cut(s)	202, 218, 519, 715
Ple19I	CGATCG	1 cut(s)	463
PleI	GAGTC	2 cut(s)	104, 216
PpsI	GAGTC	2 cut(s)	104, 216
PshBI	ATTAAT	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	400, 592
PspFI	CCCAGC	2 cut(s)	212, 665
PspGI	CCWGG	2 cut(s)	400, 592
PspN4I	GGNNCC	1 cut(s)	693
PspPI	GGNCC	1 cut(s)	737
PsuI	RGATCY	3 cut(s)	114, 268, 340
PvuI	CGATCG	1 cut(s)	463
PvuII	CAGCTG	1 cut(s)	216
RsaI	GTAC	3 cut(s)	68, 309, 542
RsaNI	GTAC	3 cut(s)	67, 308, 541
RseI	CAYNNNNRTG	2 cut(s)	328, 732
SaqAI	TTAA	4 cut(s)	21, 51, 554, 561
SatI	GCNGC	4 cut(s)	201, 217, 518, 714
Sau3AI	GATC	7 cut(s)	114, 268, 340, 460, 466, 502, 680
Sau96I	GGNCC	1 cut(s)	737
SchI	GAGTC	2 cut(s)	105, 217
ScrFI	CCNGG	2 cut(s)	402, 594
SfaNI	GCATC	3 cut(s)	96, 598, 646
SfcI	CTRYAG	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	755
SfuI	TTCGAA	1 cut(s)	241
SgrAI	CRCCGGYG	1 cut(s)	607
SlaI	CTCGAG	1 cut(s)	755
SmiMI	CAYNNNNRTG	2 cut(s)	328, 732
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	5 cut(s)	18, 22, 148, 373, 427
SsiI	CCGC	2 cut(s)	384, 517
SspI	AATATT	1 cut(s)	529
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	2 cut(s)	400, 592
StyI	CCWWGG	1 cut(s)	749
TaaI	ACNGT	3 cut(s)	395, 416, 806
TaiI	ACGT	2 cut(s)	139, 542
TaqI	TCGA	6 cut(s)	241, 273, 459, 501, 679, 756
TaqII	GACCGA	1 cut(s)	709
TasI	AATT	5 cut(s)	18, 22, 148, 373, 427
TatI	WGTACW	1 cut(s)	307
TauI	GCSGC	1 cut(s)	520
TfiI	GAWTC	3 cut(s)	170, 243, 834
Tru1I	TTAA	4 cut(s)	21, 51, 554, 561
Tru9I	TTAA	4 cut(s)	21, 51, 554, 561
TscAI	CASTG	3 cut(s)	45, 421, 739
TseFI	GTSAC	2 cut(s)	386, 416
TseI	GCWGC	3 cut(s)	200, 216, 713
Tsp45I	GTSAC	2 cut(s)	386, 416
TspDTI	ATGAA	4 cut(s)	245, 366, 438, 506
TspRI	CASTG	3 cut(s)	45, 421, 739
VspI	ATTAAT	1 cut(s)	21
XapI	RAATTY	1 cut(s)	148
XceI	RCATGY	3 cut(s)	8, 662, 800
XcmI	CCANNNNNNNNNTGG	2 cut(s)	703, 747
XhoI	CTCGAG	1 cut(s)	755
XspI	CTAG	1 cut(s)	110
Zsp2I	ATGCAT	2 cut(s)	6, 10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.