Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004442

Physical Location & Seq

Genomic Coordinates Reverse (-)

54505810 .. 54514210

Gene Structure 8401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0424000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGAGCCGCTACGACAGCCGCTCCGGCGACCCCACTTCCTACCGTGACCGGAGAAGTGATTCGGGCTTTGGTGGGGCGACCGGCTACGGTGGTTCAGCCCGGTCTTCATCAAGCAGGAAGGATTATGAAGGGGCTGAGTCGCCGAGGAAGTTGGATTTGGATGGCTTGACGCCTTTTGAGAAGAATTTCTATGTGGAGTCACCTGAAGTGGAGGGAATGACGGAGAGGGAGGTTGAGGAGTATAGGAAACGGAGGGAAATTACTGTTGAAGGCCGCGATGTTCCAAAGCCCATCAAGAGCTTCCGTGACATTGGGTTTCCCGAGTATGTCATGCAAGAAATCACAAAAGCTGGATTTGTTGAACCTACACCAATTCAAGCTCAAGGATGGCCAATGGCTTTGAAGGGACGTGATCTTATTGGTATTGCTGAAACAGGATCAGGAAAGACATTAGCTTACCTGCTGCCTGCAATTGTCCATGTCAATGCCCAGCCAATTCTATCCCCTGGAGACGGCCCGATAGTATTAGTTTTAGCTCCTACCCGTGAACTTGCCGTTCAAATCCAACAAGAGTCTACTAAATTTGGTGCATCTTCAAAAATTAAAAGCACATGCATCTATGGTGGAGTTCCGAAGGGACCTCAAGTTCGTGATCTGCAGAAAGGAGTTGAAATTGTAATTGCTACACCGGGAAGGTTGATTGATATGTTAGAGTCGCATAATACAAACTTGCGAAGGGTCACATATCTTGTGTTGGATGAGGCTGATCGGATGCTAGACATGGGGTTTGAGCCTCAGATACGAAAGATTGTTTCTCAGATTCGCCCAGACCGTCAAACATTATACTGGAGTGCTACATGGCCGAAGGAGGTTGAACAACTGGCGAGGCAGTTCCTTTACAATGCATACAAAGTAATAATAGGTTCTCCAGATCTGAAAGCCAACCACTCAATTCGCCAAATTGTTGACATCATTACTGAAAATCAGAAATATAACAAATTGGTAAAGTTGCTGGAGGATATTATGGATGGCAGCAGAATACTGATATTCATGGATACTAAGAAAGGTTGCGATCAGATCACTCGGCAGCTTCGCATGGATGGTTGGCCCGCCCTCTCCATTCATGGAGACAAAAGTCAAGCAGAAAGGGATTGGGTCCTCTCTGAGTTTAAAGCTGGCAAAAGCCCCATAATGACTGCAACAGATGTCGCTGCTCGTGGTCTAGGTAAGGTTTTGGCGGGCATCGGATTTGCCTTTGGCTTTGATAGGAAAAACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0047262

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

426

Amino Acids

47.55

Weight (kDa)

8.7

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	123 - 293	2.7e-50	DEAD/DEAH box helicase
ResIII	PF04851	142 - 286	4.4e-06	Type III restriction enzyme, res subunit
Helicase_C	PF00271	330 - 408	1e-14	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58790 AT3G58790
fragaria_vesca	FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890
malus_domestica	MD09G1155100.v1.1 MD17G1141200.v1.1
prunus_persica	Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1
pyrus_communis	pycom09g07390 pycom17g13450 pycom17g13460
rosa_chinensis	RchiOBHm_Chr2g0151041
rosa_laevigata	RLG00000020526
rosa_multiflora	Rmu_sc0000185.1_g000041
rosa_roxburghii	Rroxscaffold_2G00096740
rosa_rugosa	Rorug02G0424000 Rorug02G0424100
rosa_samantha	Rh2AG484700 Rh2BG497100 Rh2CG470900 Rh2DG507900
rosa_wichuraiana	Rw2G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	468
AccBSI	CCGCTC	1 cut(s)	21
AccI	GTMKAC	1 cut(s)	575
AccII	CGCG	1 cut(s)	276
AciI	CCGC	5 cut(s)	7, 19, 274, 1110, 1238
AclWI	GGATC	1 cut(s)	445
AcoI	YGGCCR	2 cut(s)	389, 860
AcsI	RAATTY	2 cut(s)	184, 581
AcuI	CTGAAG	1 cut(s)	225
AcyI	GRCGYC	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	512
AgsI	TTSAA	8 cut(s)	269, 362, 377, 403, 560, 597, 671, 875
AjiI	CACGTC	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	505
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AloI	GAACNNNNNNTCC	2 cut(s)	630, 662
AluBI	AGCT	7 cut(s)	300, 350, 380, 455, 536, 1090, 1175
AluI	AGCT	7 cut(s)	300, 350, 380, 455, 536, 1090, 1175
Alw26I	GTCTC	2 cut(s)	504, 1122
AlwI	GGATC	1 cut(s)	445
Ama87I	CYCGRG	1 cut(s)	320
AoxI	GGCC	5 cut(s)	271, 389, 514, 860, 1106
ApeKI	GCWGC	4 cut(s)	463, 1032, 1087, 1211
ApoI	RAATTY	2 cut(s)	184, 581
ArsI	GACNNNNNNTTYG	4 cut(s)	630, 662, 770, 802
Asp700I	GAANNNNTTC	2 cut(s)	58, 185
AspS9I	GGNCC	4 cut(s)	515, 638, 1107, 1156
AsuC2I	CCSGG	2 cut(s)	100, 690
AsuHPI	GGTGA	1 cut(s)	192
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	2 cut(s)	638, 1156
BalI	TGGCCA	1 cut(s)	391
BauI	CACGAG	1 cut(s)	1215
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	4 cut(s)	450, 1044, 1099, 1198
BccI	CCATC	5 cut(s)	155, 299, 381, 1022, 1094
BceAI	ACGGC	2 cut(s)	529, 539
BciT130I	CCWGG	1 cut(s)	507
BciVI	GTATCC	1 cut(s)	1048
BcnI	CCSGG	2 cut(s)	100, 690
BcoDI	GTCTC	2 cut(s)	504, 1122
BfaI	CTAG	2 cut(s)	776, 1223
BfmI	CTRYAG	1 cut(s)	656
BfuAI	ACCTGC	1 cut(s)	468
BfuI	GTATCC	1 cut(s)	1048
BglI	GCCNNNNNGGC	1 cut(s)	24
BglII	AGATCT	1 cut(s)	931
BisI	GCNGC	7 cut(s)	7, 19, 274, 464, 1033, 1088, 1212
BlsI	GCNGC	7 cut(s)	8, 20, 275, 465, 1034, 1089, 1213
Bme1390I	CCNGG	3 cut(s)	100, 507, 690
Bme18I	GGWCC	2 cut(s)	638, 1156
BmeT110I	CYCGRG	1 cut(s)	320
BmgBI	CACGTC	1 cut(s)	410
BmgT120I	GGNCC	4 cut(s)	515, 638, 1107, 1156
BmiI	GGNNCC	2 cut(s)	639, 1157
BmrFI	CCNGG	3 cut(s)	100, 507, 690
BmsI	GCATC	4 cut(s)	599, 624, 762, 1251
BoxI	GACNNNNGTC	1 cut(s)	1134
BpiI	GAAGAC	1 cut(s)	96
BpmI	CTGGAG	4 cut(s)	528, 868, 912, 1034
BpuEI	CTTGAG	2 cut(s)	366, 627
BpuMI	CCSGG	2 cut(s)	100, 690
BsaHI	GRCGYC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	143, 505
BsaWI	WCCGGW	1 cut(s)	48
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	1 cut(s)	512
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	2 cut(s)	851, 885
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	2 cut(s)	143, 505
BseGI	GGATG	6 cut(s)	166, 392, 763, 777, 1033, 1105
BseLI	CCNNNNNNNGG	1 cut(s)	512
BseMII	CTCAG	4 cut(s)	126, 809, 830, 1155
BseNI	ACTGG	2 cut(s)	851, 885
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	4 cut(s)	450, 1044, 1099, 1198
BseYI	CCCAGC	1 cut(s)	489
Bsh1236I	CGCG	1 cut(s)	276
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	5 cut(s)	273, 391, 516, 862, 1108
BsiEI	CGRYCG	1 cut(s)	81
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	5 cut(s)	24, 49, 81, 100, 689
BslFI	GGGAC	2 cut(s)	420, 651
BslI	CCNNNNNNNGG	1 cut(s)	512
BsmAI	GTCTC	2 cut(s)	504, 1122
BsmBI	CGTCTC	1 cut(s)	504
BsmFI	GGGAC	2 cut(s)	420, 651
BsnI	GGCC	5 cut(s)	273, 391, 516, 862, 1108
BsoBI	CYCGRG	1 cut(s)	320
Bsp143I	GATC	7 cut(s)	412, 437, 652, 766, 931, 1072, 1077
BspACI	CCGC	5 cut(s)	7, 19, 274, 1110, 1238
BspANI	GGCC	5 cut(s)	273, 391, 516, 862, 1108
BspCNI	CTCAG	4 cut(s)	127, 808, 829, 1156
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	639, 1157
BspMAI	CTGCAG	1 cut(s)	660
BspMI	ACCTGC	1 cut(s)	468
BspPI	GGATC	1 cut(s)	445
BsrBI	CCGCTC	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	851, 885
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	143, 505
BssMI	GATC	7 cut(s)	412, 437, 652, 766, 931, 1072, 1077
BssNI	GRCGYC	1 cut(s)	170
BssSI	CACGAG	1 cut(s)	1215
Bst2BI	CACGAG	1 cut(s)	1215
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	4 cut(s)	44, 89, 265, 833
BstACI	GRCGYC	1 cut(s)	170
BstC8I	GCNNGC	4 cut(s)	468, 1110, 1177, 1240
BstDEI	CTNAG	5 cut(s)	135, 795, 816, 1059, 1164
BstF5I	GGATG	6 cut(s)	166, 392, 763, 777, 1033, 1105
BstFNI	CGCG	1 cut(s)	276
BstKTI	GATC	7 cut(s)	415, 440, 655, 769, 934, 1075, 1080
BstMAI	GTCTC	2 cut(s)	504, 1122
BstMBI	GATC	7 cut(s)	412, 437, 652, 766, 931, 1072, 1077
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 24
BstNI	CCWGG	1 cut(s)	507
BstNSI	RCATGY	1 cut(s)	615
BstPAI	GACNNNNGTC	1 cut(s)	1134
BstSCI	CCNGG	3 cut(s)	98, 505, 688
BstSFI	CTRYAG	1 cut(s)	656
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	4 cut(s)	450, 1044, 1099, 1198
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	931
BstYI	RGATCY	1 cut(s)	931
BsuI	GTATCC	1 cut(s)	1048
BsuRI	GGCC	5 cut(s)	273, 391, 516, 862, 1108
BtgZI	GCGATG	1 cut(s)	291
BtrI	CACGTC	1 cut(s)	410
BtsCI	GGATG	6 cut(s)	166, 392, 763, 777, 1033, 1105
BveI	ACCTGC	1 cut(s)	468
Cac8I	GCNNGC	4 cut(s)	468, 1110, 1177, 1240
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	4 cut(s)	515, 638, 1107, 1156
CseI	GACGC	1 cut(s)	178
CviAII	CATG	8 cut(s)	331, 479, 612, 781, 858, 1051, 1096, 1124
DdeI	CTNAG	5 cut(s)	135, 795, 816, 1059, 1164
DpnI	GATC	7 cut(s)	414, 439, 654, 768, 933, 1074, 1079
DpnII	GATC	7 cut(s)	412, 437, 652, 766, 931, 1072, 1077
DraI	TTTAAA	1 cut(s)	1171
EaeI	YGGCCR	2 cut(s)	389, 860
Eco47I	GGWCC	2 cut(s)	638, 1156
Eco57I	CTGAAG	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	320
EcoO109I	RGGNCCY	2 cut(s)	638, 1156
EcoRII	CCWGG	1 cut(s)	505
EcoT22I	ATGCAT	2 cut(s)	617, 907
Esp3I	CGTCTC	1 cut(s)	504
FaeI	CATG	8 cut(s)	334, 482, 615, 784, 861, 1054, 1099, 1127
FaqI	GGGAC	2 cut(s)	420, 651
FatI	CATG	8 cut(s)	330, 478, 611, 780, 857, 1050, 1095, 1123
FauI	CCCGC	2 cut(s)	1117, 1231
FblI	GTMKAC	1 cut(s)	575
Fnu4HI	GCNGC	7 cut(s)	7, 19, 274, 464, 1033, 1088, 1212
FokI	GGATG	6 cut(s)	173, 399, 770, 784, 1040, 1112
Fsp4HI	GCNGC	7 cut(s)	7, 19, 274, 464, 1033, 1088, 1212
FspBI	CTAG	2 cut(s)	776, 1223
GluI	GCNGC	7 cut(s)	7, 19, 274, 464, 1033, 1088, 1212
GsaI	CCCAGC	1 cut(s)	493
GsuI	CTGGAG	4 cut(s)	528, 868, 912, 1034
HaeIII	GGCC	5 cut(s)	273, 391, 516, 862, 1108
HapII	CCGG	5 cut(s)	24, 49, 81, 100, 689
HgaI	GACGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	8 cut(s)	334, 482, 615, 784, 861, 1054, 1099, 1127
HincII	GTYRAC	1 cut(s)	967
HindII	GTYRAC	1 cut(s)	967
HinfI	GANTC	6 cut(s)	59, 137, 197, 572, 713, 820
HpaII	CCGG	5 cut(s)	24, 49, 81, 100, 689
HphI	GGTGA	1 cut(s)	192
Hpy166II	GTNNAC	3 cut(s)	548, 576, 967
Hpy188I	TCNGA	9 cut(s)	633, 771, 798, 819, 936, 987, 1077, 1165, 1247
Hpy188III	TCNNGA	5 cut(s)	295, 320, 441, 650, 929
Hpy8I	GTNNAC	3 cut(s)	548, 576, 967
HpyAV	CCTTC	8 cut(s)	112, 122, 263, 397, 628, 687, 729, 859
HpyCH4III	ACNGT	4 cut(s)	44, 89, 265, 833
HpyCH4IV	ACGT	1 cut(s)	409
HpyCH4V	TGCA	7 cut(s)	334, 470, 590, 615, 658, 905, 1199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 24
HpyF3I	CTNAG	5 cut(s)	135, 795, 816, 1059, 1164
HpySE526I	ACGT	1 cut(s)	409
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	8 cut(s)	334, 482, 615, 784, 861, 1054, 1099, 1127
Kzo9I	GATC	7 cut(s)	412, 437, 652, 766, 931, 1072, 1077
LmnI	GCTCC	2 cut(s)	26, 541
Lsp1109I	GCAGC	4 cut(s)	450, 1044, 1099, 1198
LweI	GCATC	4 cut(s)	599, 624, 762, 1251
MaeI	CTAG	2 cut(s)	776, 1223
MaeII	ACGT	1 cut(s)	409
MaeIII	GTNAC	4 cut(s)	44, 198, 305, 739
MalI	GATC	7 cut(s)	414, 439, 654, 768, 933, 1074, 1079
MbiI	CCGCTC	1 cut(s)	21
MboI	GATC	7 cut(s)	412, 437, 652, 766, 931, 1072, 1077
MboII	GAAGA	3 cut(s)	96, 193, 585
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	931
MlsI	TGGCCA	1 cut(s)	391
MluNI	TGGCCA	1 cut(s)	391
MlyI	GAGTC	4 cut(s)	146, 206, 581, 722
MmeI	TCCRAC	3 cut(s)	132, 589, 735
Mox20I	TGGCCA	1 cut(s)	391
Mph1103I	ATGCAT	2 cut(s)	617, 907
MroXI	GAANNNNTTC	2 cut(s)	58, 185
MscI	TGGCCA	1 cut(s)	391
MseI	TTAA	2 cut(s)	603, 1170
MslI	CAYNNNNRTG	1 cut(s)	483
Msp20I	TGGCCA	1 cut(s)	391
MspI	CCGG	5 cut(s)	24, 49, 81, 100, 689
MspR9I	CCNGG	3 cut(s)	100, 507, 690
MunI	CAATTG	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	507
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	15, 24
NciI	CCSGG	2 cut(s)	100, 690
NdeII	GATC	7 cut(s)	412, 437, 652, 766, 931, 1072, 1077
NlaIII	CATG	8 cut(s)	334, 482, 615, 784, 861, 1054, 1099, 1127
NlaIV	GGNNCC	2 cut(s)	639, 1157
NmeAIII	GCCGAG	2 cut(s)	168, 1063
NmuCI	GTSAC	4 cut(s)	44, 198, 305, 739
NsiI	ATGCAT	2 cut(s)	617, 907
NspI	RCATGY	1 cut(s)	615
PcsI	WCGNNNNNNNCGW	1 cut(s)	829
PdmI	GAANNNNTTC	2 cut(s)	58, 185
PfeI	GAWTC	2 cut(s)	59, 820
PkrI	GCNGC	7 cut(s)	8, 20, 275, 465, 1034, 1089, 1213
PleI	GAGTC	4 cut(s)	145, 205, 580, 721
PpsI	GAGTC	4 cut(s)	145, 205, 580, 721
PpuMI	RGGWCCY	2 cut(s)	638, 1156
PshAI	GACNNNNGTC	1 cut(s)	1134
Psp5II	RGGWCCY	2 cut(s)	638, 1156
Psp6I	CCWGG	1 cut(s)	505
PspFI	CCCAGC	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	2 cut(s)	639, 1157
PspPI	GGNCC	4 cut(s)	515, 638, 1107, 1156
PspPPI	RGGWCCY	2 cut(s)	638, 1156
PstI	CTGCAG	1 cut(s)	660
PsuI	RGATCY	1 cut(s)	931
RseI	CAYNNNNRTG	1 cut(s)	483
SaqAI	TTAA	2 cut(s)	603, 1170
SatI	GCNGC	7 cut(s)	7, 19, 274, 464, 1033, 1088, 1212
Sau3AI	GATC	7 cut(s)	412, 437, 652, 766, 931, 1072, 1077
Sau96I	GGNCC	4 cut(s)	515, 638, 1107, 1156
SchI	GAGTC	4 cut(s)	146, 206, 581, 722
ScrFI	CCNGG	3 cut(s)	100, 507, 690
SfaNI	GCATC	4 cut(s)	599, 624, 762, 1251
SfcI	CTRYAG	1 cut(s)	656
SinI	GGWCC	2 cut(s)	638, 1156
SmiMI	CAYNNNNRTG	1 cut(s)	483
SmlI	CTYRAG	2 cut(s)	381, 642
SmoI	CTYRAG	2 cut(s)	381, 642
SsiI	CCGC	5 cut(s)	7, 19, 274, 1110, 1238
SspMI	CTAG	2 cut(s)	776, 1223
StyD4I	CCNGG	3 cut(s)	98, 505, 688
TaaI	ACNGT	4 cut(s)	44, 89, 265, 833
TaiI	ACGT	1 cut(s)	412
TauI	GCSGC	3 cut(s)	9, 21, 276
TfiI	GAWTC	2 cut(s)	59, 820
Tru1I	TTAA	2 cut(s)	603, 1170
Tru9I	TTAA	2 cut(s)	603, 1170
TseFI	GTSAC	4 cut(s)	44, 198, 305, 739
TseI	GCWGC	4 cut(s)	463, 1032, 1087, 1211
Tsp45I	GTSAC	4 cut(s)	44, 198, 305, 739
TspDTI	ATGAA	4 cut(s)	96, 141, 1039, 1112
TspGWI	ACGGA	3 cut(s)	236, 265, 293
VpaK11BI	GGWCC	2 cut(s)	638, 1156
XapI	RAATTY	2 cut(s)	184, 581
XceI	RCATGY	1 cut(s)	615
XmiI	GTMKAC	1 cut(s)	575
XmnI	GAANNNNTTC	2 cut(s)	58, 185
XspI	CTAG	2 cut(s)	776, 1223
Zsp2I	ATGCAT	2 cut(s)	617, 907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.