Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004442

Physical Location & Seq

Genomic Coordinates Reverse (-)

54526776 .. 54527189

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0424100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGAACCAAACGCCCTAGTTGCCAGTCAGGATATAAGCCACAGTGATAGTTGGGAGGTTGCAAATGTCAACAACATCGCGAAACCGAAGACCCCAGTTGCCAATCAGCTAATAAAACACTATGACAGATGGGAGGTTGCAAATGTCAACAGCCCTTGGGAAACGTTGAGTGCCTGCAGTACTGGTGTCAAGCAATCTCTTGTTCAAGATTATCTTAGCTTCTTAAACACCGCTAGCAAAGAACATTTGAAAAGATTAAAGGGAATTGTAGAGAAAAGAGCAACATGTATGCTTGATTGCCGTGAAGAAACTCCTGAGCCCTTCAAGAGTCTTGATGGTTTACAAGACATTGGACTTTCAGTGAAGCAGATTAAGAACTTGATGAAGAAAGCAGGAGGAGGGTTATTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0047262

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

137

Amino Acids

15.23

Weight (kDa)

6.83

Isoelectric Point (pI)

54.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58790 AT3G58790
fragaria_vesca	FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890
malus_domestica	MD09G1155100.v1.1 MD17G1141200.v1.1
prunus_persica	Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1
pyrus_communis	pycom09g07390 pycom17g13450 pycom17g13460
rosa_chinensis	RchiOBHm_Chr2g0151041
rosa_laevigata	RLG00000020526
rosa_multiflora	Rmu_sc0000185.1_g000041
rosa_roxburghii	Rroxscaffold_2G00096740
rosa_rugosa	Rorug02G0424000 Rorug02G0424100
rosa_samantha	Rh2AG484700 Rh2BG497100 Rh2CG470900 Rh2DG507900
rosa_wichuraiana	Rw2G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	80
AciI	CCGC	1 cut(s)	231
AclI	AACGTT	1 cut(s)	164
AfaI	GTAC	1 cut(s)	181
AflIII	ACRYGT	1 cut(s)	284
AgsI	TTSAA	3 cut(s)	206, 250, 325
AluBI	AGCT	2 cut(s)	109, 219
AluI	AGCT	2 cut(s)	109, 219
AsuNHI	GCTAGC	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	95
BccI	CCATC	2 cut(s)	123, 329
BceAI	ACGGC	1 cut(s)	285
BfaI	CTAG	2 cut(s)	17, 234
BfmI	CTRYAG	1 cut(s)	175
BmcAI	AGTACT	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	6
BmrI	ACTGGG	1 cut(s)	89
BmtI	GCTAGC	1 cut(s)	237
BmuI	ACTGGG	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	95
Bpu10I	CCTNAGC	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	155
Bse1I	ACTGG	3 cut(s)	24, 95, 187
BseDI	CCNNGG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	3 cut(s)	24, 95, 187
BseRI	GAGGAG	1 cut(s)	411
Bsh1236I	CGCG	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp68I	TCGCGA	1 cut(s)	80
BspACI	CCGC	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	179
BspOI	GCTAGC	1 cut(s)	237
BsrI	ACTGG	3 cut(s)	24, 95, 187
BssECI	CCNNGG	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	175, 235
BstDEI	CTNAG	2 cut(s)	215, 315
BstFNI	CGCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNSI	RCATGY	1 cut(s)	288
BstSFI	CTRYAG	1 cut(s)	175
BstUI	CGCG	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	95
BtgZI	GCGATG	1 cut(s)	61
BtsIMutI	CAGTG	2 cut(s)	49, 366
BtuMI	TCGCGA	1 cut(s)	80
Cac8I	GCNNGC	2 cut(s)	175, 235
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	1 cut(s)	285
CviJI	RGCY	5 cut(s)	39, 109, 153, 219, 319
CviKI_1	RGCY	5 cut(s)	39, 109, 153, 219, 319
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	2 cut(s)	215, 315
Eco130I	CCWWGG	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	155
EcoT38I	GRGCYC	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	1 cut(s)	288
FaiI	YATR	4 cut(s)	35, 123, 286, 290
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FatI	CATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	321
FspBI	CTAG	2 cut(s)	17, 234
Hin1II	CATG	1 cut(s)	288
HincII	GTYRAC	2 cut(s)	70, 148
HindII	GTYRAC	2 cut(s)	70, 148
HinfI	GANTC	1 cut(s)	328
Hpy166II	GTNNAC	3 cut(s)	70, 148, 341
Hpy188III	TCNNGA	6 cut(s)	29, 79, 206, 314, 325, 332
Hpy8I	GTNNAC	3 cut(s)	70, 148, 341
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	3 cut(s)	62, 140, 177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	2 cut(s)	215, 315
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	288
LpnPI	CCDG	7 cut(s)	14, 37, 108, 168, 187, 327, 378
MaeI	CTAG	2 cut(s)	17, 234
MaeII	ACGT	1 cut(s)	164
MboII	GAAGA	3 cut(s)	100, 317, 397
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	337
MnlI	CCTC	4 cut(s)	49, 127, 389, 392
MseI	TTAA	3 cut(s)	224, 257, 372
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	20
NheI	GCTAGC	1 cut(s)	233
NlaIII	CATG	1 cut(s)	288
NlaIV	GGNNCC	1 cut(s)	6
NruI	TCGCGA	1 cut(s)	80
NspI	RCATGY	1 cut(s)	288
PciI	ACATGT	1 cut(s)	284
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
PscI	ACATGT	1 cut(s)	284
Psp1406I	AACGTT	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	179
RruI	TCGCGA	1 cut(s)	80
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	224, 257, 372
ScaI	AGTACT	1 cut(s)	181
SchI	GAGTC	1 cut(s)	337
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	5 cut(s)	60, 111, 138, 167, 221
SfcI	CTRYAG	1 cut(s)	175
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	1 cut(s)	231
SspMI	CTAG	2 cut(s)	17, 234
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	1 cut(s)	408
TasI	AATT	1 cut(s)	264
TatI	WGTACW	1 cut(s)	179
Tru1I	TTAA	3 cut(s)	224, 257, 372
Tru9I	TTAA	3 cut(s)	224, 257, 372
TscAI	CASTG	2 cut(s)	49, 366
TspDTI	ATGAA	1 cut(s)	398
TspRI	CASTG	2 cut(s)	49, 366
XceI	RCATGY	1 cut(s)	288
XspI	CTAG	2 cut(s)	17, 234
ZrmI	AGTACT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.