Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004442

Physical Location & Seq

Genomic Coordinates Forward (+)

11059927 .. 11063649

Gene Structure 3723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g13450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAAATTCTATATATCTACGACGGGGATAAAGAGGCTGACGATATCCAGCGCCGGCGCCGGGAAGGGGACTCCCGGGTCTCCGGCGACGGTGGCGACTCGGATGATTTCCGGCCGGACGGTCATGCCGTTGTTGCTGGTTCTGGCACTAGTTTTGCCCTTCCTTTTCGTCAGAATTGCGGTCATTGTCCTTGATTCTGCCACTGCTTGCTCTTCCACTCTCGACTGCGTAGGTTGGAGGATTTTCAGCGGGGGTGACGAATCTACACTCAGAGAGGAGTTAGCAAGAGCACTGCTAGAAGCAAAGGATGGTAACCTAAATAATAATGAGCAAGGGATCGAGTCGTTTAACCAACTGGTGCAGGAGATGACGTTGAAGCAACACGATGTCAAAGCCTTCGCTTTCAAAACAAAGGCCATGCTATCAAGAATGGAACACAAGGTTCAGTCAGCCAGACAGCGGGAATCGGTTTACTGGCATTTAGCCTCACATGGTGTGCCCAAGAGCATACATTGCCTTTGCCTCAAATTAGCAGAAGAATATGCTGTAAATGCAATAGCTCGATCGATCGTTTACCTCCACCTGAATATGTTTCTCGACTTTCTGATCCCTCCTTTCACCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0047262

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

209

Amino Acids

22.94

Weight (kDa)

9.12

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58790 AT3G58790
fragaria_vesca	FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890 FvH4_6g37890
malus_domestica	MD09G1155100.v1.1 MD17G1141200.v1.1
prunus_persica	Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1 Prupe.3G170700_v2.0.a1
pyrus_communis	pycom09g07390 pycom17g13450 pycom17g13460
rosa_chinensis	RchiOBHm_Chr2g0151041
rosa_laevigata	RLG00000020526
rosa_multiflora	Rmu_sc0000185.1_g000041
rosa_roxburghii	Rroxscaffold_2G00096740
rosa_rugosa	Rorug02G0424000 Rorug02G0424100
rosa_samantha	Rh2AG484700 Rh2BG497100 Rh2CG470900 Rh2DG507900
rosa_wichuraiana	Rw2G039730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	76
AccB1I	GGYRCC	1 cut(s)	56
AciI	CCGC	3 cut(s)	179, 249, 460
AclWI	GGATC	2 cut(s)	344, 601
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	57
AdeI	CACNNNGTG	1 cut(s)	494
AfiI	CCNNNNNNNGG	3 cut(s)	60, 66, 459
AgsI	TTSAA	2 cut(s)	376, 406
AhlI	ACTAGT	1 cut(s)	148
AluBI	AGCT	1 cut(s)	560
AluI	AGCT	1 cut(s)	560
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	84
AlwI	GGATC	2 cut(s)	344, 601
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	112, 414
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	2 cut(s)	53, 59
AsuC2I	CCSGG	3 cut(s)	61, 75, 76
AsuHPI	GGTGA	2 cut(s)	266, 610
AvaI	CYCGRG	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	501
BanI	GGYRCC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	292
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	1 cut(s)	112
BcnI	CCSGG	3 cut(s)	61, 75, 76
BcoDI	GTCTC	1 cut(s)	84
BcuI	ACTAGT	1 cut(s)	148
BfaI	CTAG	3 cut(s)	149, 296, 625
BfoI	RGCGCY	2 cut(s)	54, 60
Bme1390I	CCNGG	3 cut(s)	61, 75, 76
BmeT110I	CYCGRG	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	3 cut(s)	61, 75, 76
BpuMI	CCSGG	3 cut(s)	61, 75, 76
Bsa29I	ATCGAT	1 cut(s)	566
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 66, 459
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	2 cut(s)	360, 479
Bse3DI	GCAATG	1 cut(s)	511
BseCI	ATCGAT	1 cut(s)	566
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	2 cut(s)	108, 313
BseLI	CCNNNNNNNGG	3 cut(s)	60, 66, 459
BseMI	GCAATG	1 cut(s)	511
BseMII	CTCAG	1 cut(s)	283
BseNI	ACTGG	2 cut(s)	360, 479
BseRI	GAGGAG	1 cut(s)	290
BseSI	GKGCMC	1 cut(s)	501
BseX3I	CGGCCG	1 cut(s)	112
BsgI	GTGCAG	1 cut(s)	380
Bsh1285I	CGRYCG	3 cut(s)	115, 566, 570
BshFI	GGCC	2 cut(s)	114, 416
BshNI	GGYRCC	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	566
BsiEI	CGRYCG	3 cut(s)	115, 566, 570
BsiHKAI	GWGCWC	1 cut(s)	292
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	6 cut(s)	54, 60, 75, 83, 111, 115
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	3 cut(s)	60, 66, 459
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	2 cut(s)	114, 416
Bso31I	GGTCTC	1 cut(s)	84
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	292, 501
Bsp143I	GATC	4 cut(s)	336, 563, 567, 606
BspACI	CCGC	3 cut(s)	179, 249, 460
BspANI	GGCC	2 cut(s)	114, 416
BspCNI	CTCAG	1 cut(s)	282
BspDI	ATCGAT	1 cut(s)	566
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	2 cut(s)	344, 601
BspQI	GCTCTTC	1 cut(s)	217
BspT107I	GGYRCC	1 cut(s)	56
BspTNI	GGTCTC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	511
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	360, 479
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	4 cut(s)	336, 563, 567, 606
BssNI	GRCGYC	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	91, 121
Bst6I	CTCTTC	1 cut(s)	217
BstACI	GRCGYC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	513
BstC8I	GCNNGC	2 cut(s)	55, 208
BstDEI	CTNAG	1 cut(s)	269
BstEII	GGTNACC	1 cut(s)	311
BstF5I	GGATG	2 cut(s)	108, 313
BstH2I	RGCGCY	2 cut(s)	54, 60
BstHHI	GCGC	2 cut(s)	53, 59
BstKTI	GATC	4 cut(s)	339, 566, 570, 609
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	4 cut(s)	336, 563, 567, 606
BstMCI	CGRYCG	3 cut(s)	115, 566, 570
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 133, 513, 551
BstPI	GGTNACC	1 cut(s)	311
BstSCI	CCNGG	3 cut(s)	59, 73, 74
BstSLI	GKGCMC	1 cut(s)	501
BstZI	CGGCCG	1 cut(s)	112
Bsu15I	ATCGAT	1 cut(s)	566
BsuRI	GGCC	2 cut(s)	114, 416
BsuTUI	ATCGAT	1 cut(s)	566
BtsCI	GGATG	2 cut(s)	108, 313
BtsI	GCAGTG	2 cut(s)	201, 290
BtsIMutI	CAGTG	2 cut(s)	201, 290
Cac8I	GCNNGC	2 cut(s)	55, 208
CfoI	GCGC	2 cut(s)	53, 59
Cfr10I	RCCGGY	1 cut(s)	53
Cfr9I	CCCGGG	1 cut(s)	74
ClaI	ATCGAT	1 cut(s)	566
CviAII	CATG	3 cut(s)	124, 418, 491
CviJI	RGCY	7 cut(s)	37, 114, 395, 416, 452, 485, 560
CviKI_1	RGCY	7 cut(s)	37, 114, 395, 416, 452, 485, 560
DdeI	CTNAG	1 cut(s)	269
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	4 cut(s)	338, 565, 569, 608
DpnII	GATC	4 cut(s)	336, 563, 567, 606
DraIII	CACNNNGTG	1 cut(s)	494
DrdI	GACNNNNNNGTC	1 cut(s)	76
DseDI	GACNNNNNNGTC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	112
EagI	CGGCCG	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
EclXI	CGGCCG	1 cut(s)	112
Eco31I	GGTCTC	1 cut(s)	84
Eco32I	GATATC	1 cut(s)	45
Eco52I	CGGCCG	1 cut(s)	112
Eco88I	CYCGRG	1 cut(s)	74
Eco91I	GGTNACC	1 cut(s)	311
EcoO65I	GGTNACC	1 cut(s)	311
EcoRV	GATATC	1 cut(s)	45
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
FaeI	CATG	3 cut(s)	127, 421, 494
FaiI	YATR	8 cut(s)	12, 14, 125, 419, 492, 509, 543, 590
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	3 cut(s)	123, 417, 490
FauI	CCCGC	2 cut(s)	242, 453
FokI	GGATG	2 cut(s)	115, 320
FspBI	CTAG	3 cut(s)	149, 296, 625
GlaI	GCGC	2 cut(s)	52, 58
HaeII	RGCGCY	2 cut(s)	54, 60
HaeIII	GGCC	2 cut(s)	114, 416
HapII	CCGG	6 cut(s)	54, 60, 75, 83, 111, 115
HhaI	GCGC	2 cut(s)	53, 59
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	3 cut(s)	127, 421, 494
Hin6I	GCGC	2 cut(s)	51, 57
HinP1I	GCGC	2 cut(s)	51, 57
HinfI	GANTC	6 cut(s)	70, 97, 194, 260, 341, 464
HpaII	CCGG	6 cut(s)	54, 60, 75, 83, 111, 115
HphI	GGTGA	2 cut(s)	266, 610
Hpy166II	GTNNAC	2 cut(s)	472, 574
Hpy188I	TCNGA	4 cut(s)	102, 173, 272, 606
Hpy188III	TCNNGA	3 cut(s)	221, 426, 596
Hpy8I	GTNNAC	2 cut(s)	472, 574
Hpy99I	CGWCG	2 cut(s)	25, 91
HpyAV	CCTTC	3 cut(s)	58, 169, 406
HpyCH4III	ACNGT	2 cut(s)	91, 121
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	2 cut(s)	361, 554
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 133, 513, 551
HpyF3I	CTNAG	1 cut(s)	269
HpySE526I	ACGT	1 cut(s)	371
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	3 cut(s)	127, 421, 494
HspAI	GCGC	2 cut(s)	51, 57
KasI	GGCGCC	1 cut(s)	56
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	336, 563, 567, 606
LguI	GCTCTTC	1 cut(s)	217
MaeI	CTAG	3 cut(s)	149, 296, 625
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	2 cut(s)	254, 311
MalI	GATC	4 cut(s)	338, 565, 569, 608
MboI	GATC	4 cut(s)	336, 563, 567, 606
MboII	GAAGA	2 cut(s)	204, 548
MhlI	GDGCHC	2 cut(s)	292, 501
MluCI	AATT	3 cut(s)	5, 174, 527
Mly113I	GGCGCC	1 cut(s)	57
MlyI	GAGTC	3 cut(s)	64, 91, 350
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	7 cut(s)	27, 231, 268, 496, 533, 587, 621
MreI	CGCCGGCG	1 cut(s)	53
MroNI	GCCGGC	1 cut(s)	53
MseI	TTAA	1 cut(s)	348
MspA1I	CMGCKG	2 cut(s)	249, 460
MspI	CCGG	6 cut(s)	54, 60, 75, 83, 111, 115
MspR9I	CCNGG	3 cut(s)	61, 75, 76
MwoI	GCNNNNNNNGC	4 cut(s)	92, 133, 513, 551
NaeI	GCCGGC	1 cut(s)	55
NarI	GGCGCC	1 cut(s)	57
NciI	CCSGG	3 cut(s)	61, 75, 76
NdeII	GATC	4 cut(s)	336, 563, 567, 606
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	3 cut(s)	127, 421, 494
NlaIV	GGNNCC	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	254
PciSI	GCTCTTC	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PdiI	GCCGGC	1 cut(s)	55
PfeI	GAWTC	3 cut(s)	194, 260, 464
Ple19I	CGATCG	2 cut(s)	566, 570
PleI	GAGTC	3 cut(s)	64, 91, 349
PluTI	GGCGCC	1 cut(s)	60
PpsI	GAGTC	3 cut(s)	64, 91, 349
PspEI	GGTNACC	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	58
PvuI	CGATCG	2 cut(s)	566, 570
SapI	GCTCTTC	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	348
Sau3AI	GATC	4 cut(s)	336, 563, 567, 606
SchI	GAGTC	3 cut(s)	64, 91, 350
ScrFI	CCNGG	3 cut(s)	61, 75, 76
SduI	GDGCHC	2 cut(s)	292, 501
SetI	ASST	8 cut(s)	235, 318, 374, 444, 562, 579, 585, 626
SfoI	GGCGCC	1 cut(s)	58
SgrAI	CRCCGGYG	1 cut(s)	53
SmaI	CCCGGG	1 cut(s)	76
SpeI	ACTAGT	1 cut(s)	148
Sse9I	AATT	3 cut(s)	5, 174, 527
SsiI	CCGC	3 cut(s)	179, 249, 460
SspDI	GGCGCC	1 cut(s)	56
SspMI	CTAG	3 cut(s)	149, 296, 625
StyD4I	CCNGG	3 cut(s)	59, 73, 74
TaaI	ACNGT	2 cut(s)	91, 121
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	5 cut(s)	222, 339, 562, 566, 597
TasI	AATT	3 cut(s)	5, 174, 527
TfiI	GAWTC	3 cut(s)	194, 260, 464
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	2 cut(s)	208, 297
TseFI	GTSAC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	74
TspRI	CASTG	2 cut(s)	208, 297
XapI	RAATTY	1 cut(s)	5
XmaI	CCCGGG	1 cut(s)	74
XspI	CTAG	3 cut(s)	149, 296, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.