Rh2DG507900

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004442
Physical Location & Seq
Reverse (-)
73197741 .. 73203085
5345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG507900.1

Sequence Viewer

Length: 1161 bp
ATGGAACACAAGGTTCAGTCAGCCAGGCAGCGGGAGTCGATTTATTGGCATTTAGCTTCACATGGTGTGCCCAAGGGCGTACATTGTCTTTGCCTCAAGTTAGCAGAAGAATATGCAGTAAATGCGAGGGCTCGATCTCGTTTACCATCACCTGAATATGTTTCTCAACTTTCTGATCCCTCCTTCCACCATCTCGTTCTCCTAACAGATAACGTCCTTGCAGCTTCTGTTGTTGTCTCTTCTACAGTCCAAAATTCAGCCAACCCTGAAAAATTGATTTTTCACATCGTCACTGACAAGAAGACTTACACTCCTATGCATGCATGGTTTGCAACTAATTCTATCAAATCAGCAGTGGTGGAAGTTAAAGGGTTACACCAATATGACTGGTCTCAAGAACTAAATTTTGCAGTCAAAGACATGTTAGAGATCCACCGCTCAATCTGGAAACATTATTACAATGATTTGAAACAGCATGACTTCGAATTTGATGAAGAACATAAAAGATACCTTGAAGCTTTAAGTCCCAGCAGCCTTTCCCTCATGAACCTTCTTCGAATTTATATCCCTGAGCTGTTTCCAGATCTCAACAAGATAGTGTTCTTGGAGGATGATGTTGTAGTACAACATGACATATCGGCTTTGTGGGAATTGGATCTCAGTGGAAATGTTGTTGGTGCAGTTGTCAATTCATGGTGCGGTGAAAACTGCTGCCCAGGAAGAAAATACAAGGATTACTTCAATTTTTCACACCCTATCATTTCATCCAACTTTGTTCATGATCGTTGTATGTGGCTGTATGGCGTAAATATTTTTGACCTTGAAGCTTGGAGGAGGACTACTATAACAGAGACTTACCATCAATGGTTAAAACTTAGCCAGCAATCTGGGTTGAATTTGTGGTCTCCAGGAGTAAAACCACCGGCCTTAATTGCATTTGAGGGTCATGTGCATCCTATCGATCCATTGTGGCATGTGGCCGAGCTAGGTCATCGCTTCCCAGAAGTTCCTCTAGAGATAGTGGAAGCTGCTGCAGTTATACATTTCAGTGGCCCAGCAAAGCCATGGCTTGAGATCGGGTCTCCAGAGGTACGAGGCTTGTGGAAGAGACATGTAAATTGTTCAAACAAGTTCATTAGGAGATGTAAAGTCATTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008194 GO:0016740 GO:0016757 GO:0016758 GO:0047262
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_8

Protein Analysis

386

Amino Acids

44.52

Weight (kDa)

6.53

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 29 - 359 2.9e-61 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 438
AciI CCGC 3 cut(s) 31, 436, 699
AclWI GGATC 4 cut(s) 170, 424, 663, 956
AcoI YGGCCR 1 cut(s) 978
AcsI RAATTY 5 cut(s) 253, 403, 485, 558, 895
AdeI CACNNNGTG 1 cut(s) 65
AfaI GTAC 3 cut(s) 81, 624, 1092
AfiI CCNNNNNNNGG 1 cut(s) 30
AflIII ACRYGT 2 cut(s) 420, 1111
AgsI TTSAA 6 cut(s) 469, 515, 742, 824, 895, 1125
AjnI CCWGG 3 cut(s) 23, 715, 907
AluBI AGCT 7 cut(s) 56, 224, 518, 574, 827, 985, 1028
AluI AGCT 7 cut(s) 56, 224, 518, 574, 827, 985, 1028
Alw26I GTCTC 6 cut(s) 241, 396, 845, 909, 1086, 1102
AlwI GGATC 4 cut(s) 170, 424, 663, 956
AlwNI CAGNNNCTG 1 cut(s) 227
AoxI GGCC 3 cut(s) 924, 978, 1051
ApeKI GCWGC 6 cut(s) 28, 221, 531, 711, 1028, 1031
ApoI RAATTY 5 cut(s) 253, 403, 485, 558, 895
ArsI GACNNNNNNTTYG 2 cut(s) 470, 502
AspS9I GGNCC 1 cut(s) 1052
AsuHPI GGTGA 2 cut(s) 141, 713
AsuII TTCGAA 2 cut(s) 483, 556
BaeGI GKGCMC 1 cut(s) 72
BanII GRGCYC 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 308
BbvI GCAGC 6 cut(s) 40, 233, 543, 698, 1015, 1018
BccI CCATC 3 cut(s) 154, 198, 867
BciT130I CCWGG 3 cut(s) 25, 717, 909
BcoDI GTCTC 6 cut(s) 241, 396, 845, 909, 1086, 1102
BfaI CTAG 2 cut(s) 986, 1013
BfmI CTRYAG 2 cut(s) 243, 1032
BglII AGATCT 1 cut(s) 583
BisI GCNGC 6 cut(s) 29, 222, 532, 712, 1029, 1032
BlsI GCNGC 6 cut(s) 30, 223, 533, 713, 1030, 1033
Bme1390I CCNGG 3 cut(s) 25, 717, 909
BmgT120I GGNCC 1 cut(s) 1052
BmrFI CCNGG 3 cut(s) 25, 717, 909
BmsI GCATC 1 cut(s) 961
BpiI GAAGAC 1 cut(s) 308
BpmI CTGGAG 2 cut(s) 891, 1068
Bpu10I CCTNAGC 1 cut(s) 570
Bpu14I TTCGAA 2 cut(s) 483, 556
BpuEI CTTGAG 3 cut(s) 80, 378, 1091
Bsa29I ATCGAT 1 cut(s) 960
BsaI GGTCTC 3 cut(s) 396, 909, 1086
BsaJI CCNNGG 3 cut(s) 72, 715, 1064
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse118I RCCGGY 1 cut(s) 922
Bse1I ACTGG 1 cut(s) 392
BseBI CCWGG 3 cut(s) 25, 717, 909
BseCI ATCGAT 1 cut(s) 960
BseDI CCNNGG 3 cut(s) 72, 715, 1064
BseGI GGATG 3 cut(s) 616, 764, 952
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMII CTCAG 2 cut(s) 561, 673
BseNI ACTGG 1 cut(s) 392
BseRI GAGGAG 1 cut(s) 847
BseSI GKGCMC 1 cut(s) 72
BseXI GCAGC 6 cut(s) 40, 233, 543, 698, 1015, 1018
BseYI CCCAGC 2 cut(s) 527, 1054
BsgI GTGCAG 1 cut(s) 699
BshFI GGCC 3 cut(s) 926, 980, 1053
BshVI ATCGAT 1 cut(s) 960
BsiSI CCGG 1 cut(s) 923
BslFI GGGAC 1 cut(s) 510
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 6 cut(s) 241, 396, 845, 909, 1086, 1102
BsmFI GGGAC 1 cut(s) 510
BsnI GGCC 3 cut(s) 926, 980, 1053
Bso31I GGTCTC 3 cut(s) 396, 909, 1086
Bsp119I TTCGAA 2 cut(s) 483, 556
Bsp1286I GDGCHC 2 cut(s) 72, 133
Bsp143I GATC 8 cut(s) 134, 175, 429, 583, 655, 781, 961, 1074
Bsp19I CCATGG 1 cut(s) 1064
BspACI CCGC 3 cut(s) 31, 436, 699
BspANI GGCC 3 cut(s) 926, 980, 1053
BspCNI CTCAG 2 cut(s) 562, 672
BspDI ATCGAT 1 cut(s) 960
BspHI TCATGA 2 cut(s) 543, 778
BspMAI CTGCAG 1 cut(s) 1036
BspPI GGATC 4 cut(s) 170, 424, 663, 956
BspT104I TTCGAA 2 cut(s) 483, 556
BspTNI GGTCTC 3 cut(s) 396, 909, 1086
BsrBI CCGCTC 1 cut(s) 438
BsrFI RCCGGY 1 cut(s) 922
BsrI ACTGG 1 cut(s) 392
BssAI RCCGGY 1 cut(s) 922
BssECI CCNNGG 3 cut(s) 72, 715, 1064
BssMI GATC 8 cut(s) 134, 175, 429, 583, 655, 781, 961, 1074
BssT1I CCWWGG 2 cut(s) 72, 1064
Bst2UI CCWGG 3 cut(s) 25, 717, 909
Bst4CI ACNGT 1 cut(s) 247
Bst6I CTCTTC 2 cut(s) 244, 1100
BstAPI GCANNNNNTGC 2 cut(s) 122, 329
BstBI TTCGAA 2 cut(s) 483, 556
BstC8I GCNNGC 2 cut(s) 321, 881
BstDEI CTNAG 3 cut(s) 570, 659, 875
BstDSI CCRYGG 1 cut(s) 1064
BstF5I GGATG 3 cut(s) 616, 764, 952
BstKTI GATC 8 cut(s) 137, 178, 432, 586, 658, 784, 964, 1077
BstMAI GTCTC 6 cut(s) 241, 396, 845, 909, 1086, 1102
BstMBI GATC 8 cut(s) 134, 175, 429, 583, 655, 781, 961, 1074
BstMWI GCNNNNNNNGC 3 cut(s) 122, 329, 932
BstNI CCWGG 3 cut(s) 25, 717, 909
BstNSI RCATGY 4 cut(s) 323, 424, 977, 1115
BstSCI CCNGG 3 cut(s) 23, 715, 907
BstSFI CTRYAG 2 cut(s) 243, 1032
BstSLI GKGCMC 1 cut(s) 72
BstV1I GCAGC 6 cut(s) 40, 233, 543, 698, 1015, 1018
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 3 cut(s) 429, 583, 655
BstXI CCANNNNNNTGG 1 cut(s) 887
BstYI RGATCY 3 cut(s) 429, 583, 655
Bsu15I ATCGAT 1 cut(s) 960
BsuRI GGCC 3 cut(s) 926, 980, 1053
BsuTUI ATCGAT 1 cut(s) 960
BtgI CCRYGG 1 cut(s) 1064
BtgZI GCGATG 1 cut(s) 977
BtsCI GGATG 3 cut(s) 616, 764, 952
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 4 cut(s) 291, 360, 667, 1054
Cac8I GCNNGC 2 cut(s) 321, 881
CaiI CAGNNNCTG 1 cut(s) 227
CciI TCATGA 2 cut(s) 543, 778
Cfr10I RCCGGY 1 cut(s) 922
Cfr13I GGNCC 1 cut(s) 1052
ClaI ATCGAT 1 cut(s) 960
Csp6I GTAC 3 cut(s) 80, 623, 1091
CviQI GTAC 3 cut(s) 80, 623, 1091
DdeI CTNAG 3 cut(s) 570, 659, 875
DpnI GATC 8 cut(s) 136, 177, 431, 585, 657, 783, 963, 1076
DpnII GATC 8 cut(s) 134, 175, 429, 583, 655, 781, 961, 1074
DraIII CACNNNGTG 1 cut(s) 65
EaeI YGGCCR 1 cut(s) 978
Eam1104I CTCTTC 2 cut(s) 244, 1100
EarI CTCTTC 2 cut(s) 244, 1100
Eco130I CCWWGG 2 cut(s) 72, 1064
Eco24I GRGCYC 1 cut(s) 133
Eco31I GGTCTC 3 cut(s) 396, 909, 1086
EcoRII CCWGG 3 cut(s) 23, 715, 907
EcoT14I CCWWGG 2 cut(s) 72, 1064
EcoT22I ATGCAT 2 cut(s) 321, 325
EcoT38I GRGCYC 1 cut(s) 133
ErhI CCWWGG 2 cut(s) 72, 1064
FalI AAGNNNNNCTT 2 cut(s) 722, 754
FaqI GGGAC 1 cut(s) 510
FauI CCCGC 1 cut(s) 24
Fnu4HI GCNGC 6 cut(s) 29, 222, 532, 712, 1029, 1032
FokI GGATG 3 cut(s) 623, 751, 939
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 6 cut(s) 29, 222, 532, 712, 1029, 1032
FspBI CTAG 2 cut(s) 986, 1013
GluI GCNGC 6 cut(s) 29, 222, 532, 712, 1029, 1032
GsaI CCCAGC 2 cut(s) 531, 1058
GsuI CTGGAG 2 cut(s) 891, 1068
HaeIII GGCC 3 cut(s) 926, 980, 1053
HapII CCGG 1 cut(s) 923
HindIII AAGCTT 2 cut(s) 516, 825
HinfI GANTC 1 cut(s) 35
HpaII CCGG 1 cut(s) 923
HphI GGTGA 2 cut(s) 141, 713
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 7 cut(s) 395, 445, 544, 581, 779, 1013, 1085
Hpy8I GTNNAC 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 193, 560
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4IV ACGT 1 cut(s) 213
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 329, 932
HpyF3I CTNAG 3 cut(s) 570, 659, 875
HpySE526I ACGT 1 cut(s) 213
Kzo9I GATC 8 cut(s) 134, 175, 429, 583, 655, 781, 961, 1074
Lsp1109I GCAGC 6 cut(s) 40, 233, 543, 698, 1015, 1018
LweI GCATC 1 cut(s) 961
MaeI CTAG 2 cut(s) 986, 1013
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 2 cut(s) 289, 372
MalI GATC 8 cut(s) 136, 177, 431, 585, 657, 783, 963, 1076
MbiI CCGCTC 1 cut(s) 438
MboI GATC 8 cut(s) 134, 175, 429, 583, 655, 781, 961, 1074
MboII GAAGA 7 cut(s) 119, 231, 313, 506, 545, 732, 1117
MflI RGATCY 3 cut(s) 429, 583, 655
MhlI GDGCHC 2 cut(s) 72, 133
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 792
Mph1103I ATGCAT 2 cut(s) 321, 325
MseI TTAA 4 cut(s) 366, 521, 869, 929
MslI CAYNNNNRTG 3 cut(s) 314, 381, 1047
MspA1I CMGCKG 1 cut(s) 31
MspI CCGG 1 cut(s) 923
MspR9I CCNGG 3 cut(s) 25, 717, 909
MvaI CCWGG 3 cut(s) 25, 717, 909
MwoI GCNNNNNNNGC 3 cut(s) 122, 329, 932
NcoI CCATGG 1 cut(s) 1064
NdeII GATC 8 cut(s) 134, 175, 429, 583, 655, 781, 961, 1074
NmeAIII GCCGAG 1 cut(s) 1006
NmuCI GTSAC 1 cut(s) 289
NsiI ATGCAT 2 cut(s) 321, 325
NspI RCATGY 4 cut(s) 323, 424, 977, 1115
NspV TTCGAA 2 cut(s) 483, 556
PaeI GCATGC 1 cut(s) 323
PagI TCATGA 2 cut(s) 543, 778
PciI ACATGT 2 cut(s) 420, 1111
PfoI TCCNGGA 1 cut(s) 907
PkrI GCNGC 6 cut(s) 30, 223, 533, 713, 1030, 1033
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
PscI ACATGT 2 cut(s) 420, 1111
Psp6I CCWGG 3 cut(s) 23, 715, 907
PspFI CCCAGC 2 cut(s) 527, 1054
PspGI CCWGG 3 cut(s) 23, 715, 907
PspPI GGNCC 1 cut(s) 1052
PstI CTGCAG 1 cut(s) 1036
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 3 cut(s) 429, 583, 655
RsaI GTAC 3 cut(s) 81, 624, 1092
RsaNI GTAC 3 cut(s) 80, 623, 1091
RseI CAYNNNNRTG 3 cut(s) 314, 381, 1047
SaqAI TTAA 4 cut(s) 366, 521, 869, 929
SatI GCNGC 6 cut(s) 29, 222, 532, 712, 1029, 1032
Sau3AI GATC 8 cut(s) 134, 175, 429, 583, 655, 781, 961, 1074
Sau96I GGNCC 1 cut(s) 1052
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 3 cut(s) 25, 717, 909
SduI GDGCHC 2 cut(s) 72, 133
SfaNI GCATC 1 cut(s) 961
SfcI CTRYAG 2 cut(s) 243, 1032
SfuI TTCGAA 2 cut(s) 483, 556
SmiMI CAYNNNNRTG 3 cut(s) 314, 381, 1047
SmlI CTYRAG 3 cut(s) 95, 393, 1070
SmoI CTYRAG 3 cut(s) 95, 393, 1070
SphI GCATGC 1 cut(s) 323
SsiI CCGC 3 cut(s) 31, 436, 699
SspI AATATT 1 cut(s) 811
SspMI CTAG 2 cut(s) 986, 1013
StyD4I CCNGG 3 cut(s) 23, 715, 907
StyI CCWWGG 2 cut(s) 72, 1064
TaaI ACNGT 1 cut(s) 247
TaiI ACGT 1 cut(s) 216
TaqI TCGA 5 cut(s) 38, 133, 483, 556, 960
TatI WGTACW 1 cut(s) 622
Tru1I TTAA 4 cut(s) 366, 521, 869, 929
Tru9I TTAA 4 cut(s) 366, 521, 869, 929
TscAI CASTG 4 cut(s) 298, 360, 667, 1054
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 6 cut(s) 28, 221, 531, 711, 1028, 1031
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 6 cut(s) 507, 560, 681, 753, 767, 1123
TspRI CASTG 4 cut(s) 298, 360, 667, 1054
XapI RAATTY 5 cut(s) 253, 403, 485, 558, 895
XbaI TCTAGA 1 cut(s) 1012
XceI RCATGY 4 cut(s) 323, 424, 977, 1115
XcmI CCANNNNNNNNNTGG 1 cut(s) 1062
XspI CTAG 2 cut(s) 986, 1013
Zsp2I ATGCAT 2 cut(s) 321, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.